BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44940.1
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483623 jgi|Araly1|483623|fgenesh2_kg.4__2683__AT2G44940.1 1338 0.0
Ahg486521 jgi|Araly1|486521|fgenesh2_kg.5__2513__AT3G60490.1 235 5e-61
Ahg481434 jgi|Araly1|481434|fgenesh2_kg.4__494__AT2G25820.1 115 7e-25
> Ahg483623 jgi|Araly1|483623|fgenesh2_kg.4__2683__AT2G44940.1
Length=996
Score = 1338 bits (724), Expect = 0.0
Identities = 922/1011 (91%), Gaps = 39/1011 (4%)
Strand=Plus/Plus
Query 1 GTGCAACCATCTCTCTAAAGCTTCTTCTCTCATAACAATGGCAAGACAAATCAACATAGA 60
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1 GTGCAACCATCTCTCTAAAG---CTTCTCTCATAACAATGGAAAGACAAATCAACATAGA 57
Query 61 GAGTAGTGTTTCTCAAGTTACCTTTATCTCCTCCGCCATCCCCGCCGTATCTTCCTCCTC 120
|||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 58 GAGTAGTGTTTCTCAAGTAACCTTTATCTCCTCCGCCATCTTCGCCGTA---TCCTCCTC 114
Query 121 CTCCATCACCGCTTCCGCCTCATTGTCCTCTTCACCTACTACATCTTC--C-TCTTCTTC 177
|||| || | || | ||||||||||||||||||||||| |||||||| | ||||| ||
Sbjct 115 CTCCGTCTCTGCAGCGGCCTCATTGTCCTCTTCACCTACGACATCTTCTTCTTCTTCATC 174
Query 178 GTCATCAACAAATTCTAACTTCATTGAGGAAGACAACTCTAAAAGAAAAGCATCTCGAAG 237
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GTCATCAACAAGTTCTAACTTCATTGAGGAAGACAACTCTAAAAGAAAAGCATCTCGAAG 234
Query 238 ATCATTGTCATCGTTAGTCTCCGTTGAAGACGATGATGATCAAAACGGTGGAGGTGGGAA 297
| ||| |||| ||||||||||||| ||||||| ||||| |||||| || ||
Sbjct 235 ---A---TCA---TTAGCCTCCGTTGAAGAC---GATGATCGAAACGATGGAGGAGGAAA 282
Query 298 ACGGCGAAAGACCAACGGTGGAGATAAACATCCGACGTATAGAGGAGTGA-GGATGAGGA 356
|||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 283 ACGGCGAAAGACCAGCGGTGGAGATAAACATCCGACGTATAGAGGAGT-ACGGATGAGAA 341
Query 357 GTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCG-AGAAAGAAATCAAGAATCTGGCTC 415
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 342 GTTGGGGAAAATGGGTATCGGAGATTAGAGAGCCGAAG-AAGAAATCAAGAATCTGGCTC 400
Query 416 GGGACTTATCCAACGGCTGAGATGGCAGCTCGAGCTCATGACGTAGCGGCTTTAGCCATT 475
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 401 GGGACGTATCCAACGGCTGAGATGGCAGCTCGAGCTCATGACGTGGCGGCTTTAGCCATT 460
Query 476 AAAGGTACAACGGCTTACCTCAATTTTCC-CAAGTTAGCCGGCGAGCTTCCTCGTCCAGT 534
||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 461 AAAGGTACAACGGCTTACCTCAATTTTCCTGAA-TTATCCGGCGAGCTTCCTCGTCCAGT 519
Query 535 CACAAATTCTCCTAAAGACATTCAAGCCGCCGCCTCTTTAGCGGCCGTTAACTGGCAAGA 594
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 520 CACAAATTCTCCTAAAGACATTCAAGCCGCCGCCTCTTTAGCCGCCGTTAATTGGCAAGA 579
Query 595 TTCGGTCAACGATGTGAGTAATTCTGAAGTGGCTGAAATAGTTGAAGCCGAGCCGAGTCG 654
| |||||| ||||||||||||||||||| | |||||| ||| ||||||||||||||||||
Sbjct 580 TCCGGTCAGCGATGTGAGTAATTCTGAAATAGCTGAATTAGCTGAAGCCGAGCCGAGTCG 639
Query 655 AGCCGTGGTGGCTCAGTTGTTTTCTTCGGACACAAGCACGACGACGACGACTCAGAGTCA 714
|||||||||||||||| ||||||||||||||||||||||| | |||||||||| |||||
Sbjct 640 AGCCGTGGTGGCTCAGCTGTTTTCTTCGGACACAAGCACG--G-CGACGACTCAAAGTCA 696
Query 715 AGAGTATTCGGAAGCTTCGTGTGCTTCGACTTCGGCGTGTACGGACAAAGACAGTGAGGA 774
||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 697 AGAGTCTTCGGAAGCTTCGTGTGCTTCGACGTCG---TGTACGGACAAAGACAGTGAGGA 753
Query 775 AGAGAAGCTGTTTGATTTGCCGGATTTGTTTACCGATGAGAATGAGATGATGATACGAAA 834
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 754 AGAGAAGCTGTTTGATTTGCCGGACTTGTTTACCGATGAGAATGAGATGATGATACGAAA 813
Query 835 CGATGCGTTTTGCTACTACTCGTCCACGTGGCAGCTTTGTGGAGCCGATGCTGGGTTTCG 894
||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 814 CGATGCGTTTTGCTATTACTCGTCCACGTGGCAGATTTGTGGAGCTGATGCTGGGTTTCG 873
Query 895 GCTTGAAGAGCCGTTTTTTCTATCTGAATGACTAAAGTACCCCTCT-CGAGAGAGCTCTC 953
|||||||||||||||||| || |||||||||||||| ||||| | | |||||||||||
Sbjct 874 GCTTGAAGAGCCGTTTTT-CTGTCTGAATGACTAAATTACCCTT-TACGAGAGAGCTC-- 929
Query 954 ACTAACACTTTATTAGTTTGCCATTTACTTCTTCTTCATTTTCTCTA-TTT 1003
|||||||||| |||| |||||| ||| |||||||||| |||||| || |||
Sbjct 930 ACTAACACTTGATTAATTTGCCCTTTTCTTCTTCTTCTTTTTCTTTAATTT 980
> Ahg486521 jgi|Araly1|486521|fgenesh2_kg.5__2513__AT3G60490.1
Length=816
Score = 235 bits (127), Expect = 5e-61
Identities = 177/201 (88%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 333 CGTATAGAGGAGTGAGGATGAGGAGTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCGA 392
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 224 CGTATAGAGGAGTGAGGATGAGGAGTTGGGGGAAATGGGTGTCGGAGATTAGAGAGCCGA 283
Query 393 GAAAGAAATCAAGAATCTGGCTCGGGACTTATCCAACGGCTGAGATGGCAGCTCGAGCTC 452
| ||||| |||||||| ||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 284 GGAAGAAGTCAAGAATATGGCTTGGCACTTATCCAACGGCTGAGATGGCAGCTCGTGCTC 343
Query 453 ATGACGTAGCGGCTTTAGCCATTAAAGGTA-CAACGGCTTACCTCAATTTTCCCA-AGTT 510
|||| || ||||||||||| |||||||| | | ||| ||| |||||||| ||| | ||
Sbjct 344 ATGATGTGGCGGCTTTAGCTATTAAAGGCAACTCCGG-TTATCTCAATTT-CCCTGACTT 401
Query 511 AGCCGGCGAGCTTCCTCGTCC 531
| |||| ||||||||||||
Sbjct 402 ATCCGGTTTGCTTCCTCGTCC 422
> Ahg481434 jgi|Araly1|481434|fgenesh2_kg.4__494__AT2G25820.1
Length=732
Score = 115 bits (62), Expect = 7e-25
Identities = 99/117 (85%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 350 ATGAGGAGTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCGAGAAAGAAATCAAGAATC 409
|||||||| ||||| |||||||| ||||||||| | ||||| | |||||||||||||||
Sbjct 94 ATGAGGAGCTGGGGGAAATGGGTCTCGGAGATTCGGGAGCCTCGTAAGAAATCAAGAATC 153
Query 410 TGGCTCGGGACTTATCCA-ACGGCTGAGATGGCAGCTCGAGCTCATGACGTAGCGGC 465
||||||||||||| ||| ||||| ||||||||||| || || || || || |||||
Sbjct 154 TGGCTCGGGACTT-TCCCCACGGCGGAGATGGCAGCCCGTGCCCACGATGTTGCGGC 209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5