BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44950.1
Length=3370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483624 jgi|Araly1|483624|fgenesh2_kg.4__2684__AT2G44950.1 5345 0.0
> Ahg483624 jgi|Araly1|483624|fgenesh2_kg.4__2684__AT2G44950.1
Length=3337
Score = 5345 bits (2894), Expect = 0.0
Identities = 3233/3386 (95%), Gaps = 65/3386 (2%)
Strand=Plus/Plus
Query 1 TCACTCTTGTTTTTGTTTCTGTGAGTGCTGTGTGTGTTCTCG-GTTTGTAATATC-TAAG 58
||||||||||||||||||||||||||||| | |||||| || |||||||||||| | ||
Sbjct 1 TCACTCTTGTTTTTGTTTCTGTGAGTGCT-T-TGTGTTGGCGTGTTTGTAATATCTTTAG 58
Query 59 TCGCACAAAGATCAGACAAAGTCTGTTTGCGTTTGATAGCATTAGAGTCTGATCGAATTT 118
||||||||||||||| | | | || |||||||| || ||||||||
Sbjct 59 TCGCACAAAGATCAG----A---------C-----A-AG-ATTAGAGTTTGGTCGAATTT 98
Query 119 GGAAGACC--TGTGAGATTAGGGTTTCtttttgtttgtttttttttATTCCGAAGGAGAG 176
|||||||| || |||||||||| | ||||| ||| ||| |||| |||||| ||| |||
Sbjct 99 GGAAGACCGGTGAGAGATTAGGG--T-TTTTT-TTT-TTTGTTTTAATTCCG-AGGGGAG 152
Query 177 CTGCGGAGCAATTGGAATTACCTCGGTTAAAGCAATCACGTAGCTTTGGATCGTTTAGGG 236
||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 153 CTGCGGAGCAATT-GAATTACCTCGGTTGAAGCAATCACGTAGC-TTGGATCGTTTAGGG 210
Query 237 TTTTCTCATTGGGTTT-GGGGGATTTGTATTCGAGCTTCCTCAAACTCAATCTGATGGTG 295
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 211 TTTTCTCATTGGGTTTGGGGGGATTTGTATTCGAGCTTCCTCAAACTCAATCTGATGATG 270
Query 296 ATGTGAGACAAGGCTTAATCCTGTTAATTGG-CGATTCTAGGGTTTTTCAATGGCGAGCA 354
|||||| |||| ||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 271 ATGTGACACAA-GCTTAATCCTGTT-ATTGGCCGATTCTAGGGTTTTTGAATGGCGAGCA 328
Query 355 CAGGCGAGCCTGACCGTAAAAGGCGTCACTTTAGCTCCATATCACCTTCTGAAGCTGCAG 414
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 329 CAGGCGAGCCTGACCGTAAAAGGCGTCACTTTAGCTCCATATCACCCTCTGAAGCTGCAG 388
Query 415 CCGCCGTAAAGAAACAGCCTTTCTTTTGGCCCTCCTCCGAGGACAAGCTTGATACTGCAG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 CCGCCGTAAAGAAACAGCCTTTCTTTTGGCCCTCCTCCGAGGACAAGCTTGATACTGCAG 448
Query 475 TTCTTCAGTTCCAAAATCTTAAGCTATCACAAAAGCTAGAGGCTCAGCAGGTTGAGTGTT 534
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 449 TTCTTCAGTTCCAAAATCTGCAGCTATCACAAAAGCTAGAGGCTCAGCATGTTGAGTGTT 508
Query 535 CTATTCTTGAGGATAAACTCTCTCAGATCAAGGAAAAACAATTACCATACAACTCCAGTT 594
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 509 CTATTCTTGAGGATAAACTTTCTCAGATCAAGGAAAAACAATTACCATACAGCTCCAGTT 568
Query 595 TGAAGACTGTCCATAAGTCTTGGGAAAAGCTTACAGCTTCAGTGGAATCATGCTCTGTTC 654
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 569 TGAAGACTGTCCATAAGTCTTGGGAAAAGCTTACAGCTACAGTGGAATCATGCTCTGTTC 628
Query 655 GTGTGAGTGATTCAAGCAGCGGAGCTCATAGGTTTGTAAACAAGGAGGATGGGTCTTCTC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 629 GTGTGAGTGATTCAAGCAGCGGAGCTCATAGGTTTGTAAACAAGGAGGATGGGTCGTCTC 688
Query 715 CAGCCGTGAAAAACGATTTCATCAACCGGCTACTTGAAACTGGTGCTACTGAGAGCTCCT 774
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 689 CAGCCGTGAAAAACGATTTCATCAACCGGCTACTCGAAACTGGTGCCACTGAGAGCTCCT 748
Query 775 CATCCAATATCTGCTCGAATCAGATGGAAGAAAATGGAGTGAATACGTCAAGCCAGATGA 834
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 749 CATCCAATATCTGCTCGAATCGGATGGAAGAAAATGGAGTGAATACGTCAAGCCAGATGA 808
Query 835 CGCAAACCTTGTATAATCTAGTAGCCGCGACAGAGGATTTGAGGTGTCTGAAGGATGA-A 893
|||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct 809 CGCAAACCTTGTCTAACCTAGTAGCCGCGACAGATGATTTGAGGTGTCTGAACGATGACC 868
Query 894 TTATATCCCACAGTTCTCAGAACCAATCTTGGTAAAGATTTGTGCGGTCAGCTAGCTCTG 953
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 869 TT-TATCCCACAGTTCTCAGAACCAGTCTTGGTAAAGATTTGTGCGGTCAGCTAGCTCTG 927
Query 954 AGTGAGTTGGAATCAGAAATTAAAAGTTTCAGAGGGGATCTAGATGATGTACTTGTGAAG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 AGTGAGTTGGAATCAGAAATTAAAAGTTTCAGAGGGGATCTAGATGATGTACTTGTGAAG 987
Query 1014 TTCAAATCACTTTCTAGAGAATTGCAGAGTCATCGCGATGCTGATGCTAAAGTTAGAGTA 1073
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 988 TTCAAATCTCTTTCTAGAGAATTGCAGAGTCATCGCGATGCTGATGCTAAAGTTAGAGCA 1047
Query 1074 GACCTCAAACGAATAAGAGGGGAGCTAGAGGATGAGGTTGTGGAGCTTCAGCAGTGTAAT 1133
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1048 GACCTCAAACGAATAAGAGGGGAGCTAGAGGATGAGGTCGTGGAGCTTCAGCAGTGTAAT 1107
Query 1134 GGTGACTTGTCAGCATTGAGAGCAGAAAGGGATGCAACAGCTGGGGCGTTTTTCCCAGTG 1193
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1108 GGTGACTTGTCAGCATTGAGAGCAGAAAGAGATGCAACAGCAGGGGCGTTTTTCCCAGTG 1167
Query 1194 TTGAGTCTTGGAAATAAGCTTGCTACCAGTGATCGGGAGAGGGATAAACAAAGGGATCTG 1253
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1168 TTGAGCCTTGGAAATAAGCTTGCTACCAGTGATAGGGAAAGGGATAAACAAAGGGATCTG 1227
Query 1254 CAAGACATGGAAACAGTTCTGAAAGAGTTAACGGTCCTGGCTTCAGGCAGGCTACAACAG 1313
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1228 CATGACATGGAAACAGTTCTGAAAGAGTTAACGGTCCTGGCTTCAGGCAGGCTACAAGAG 1287
Query 1314 CTAAAAAATCTTCATGAGGAGAGGACAAAGATGCTTGGAAAAATGAGTAATTTACAGAAC 1373
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1288 CTAAAAGATCTTCATGAGGAGAGGACAAAGATGCTTGAAAAAATGAGTAATTTACAGAAC 1347
Query 1374 AAGTCAAAGTCTGTGAGGTGCATCTCATCTTCTCAAGCCTGCCTTTCTTTGAAAGACCAG 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 AAGTCAAAGTCTGTGAGGTGCATCTCATCTTCTCAAGCCTGCCTTTCTTTGAAAGACCAG 1407
Query 1434 CTAGAAAAATCCAAAGAAGCAGTTTTCCAGTATATGGCTTTACTTGAGAAACTGCAGGTT 1493
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 CTAAAAAAATCCAAAGAAGCAGTTTTCCAGTATATGGCTTTACTTGAGAAACTGCAGGTT 1467
Query 1494 GAAAAAGATAGTATAGTCTGGAAGGAAAGGGAGATAAATATAAAAAATGAACTAGGTGAT 1553
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1468 GAAAAAGATAGTATAGTCTGGAAGGAAAGGGAGATGAATATAAAAAATGAACTAGTTGAT 1527
Query 1554 GTTTCTCGAAAGACGTCTGCTGTTACTGATTCTAGAATGGCTTCTTTGGATTCGGAGATA 1613
|||||||||| ||| ||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 1528 GTTTCTCGAAGGACTTCTGCTGTTGCTGATTCCAGAATGGCTTCTTTAGATTCGGAGATA 1587
Query 1614 CAGAAACAACTGGATGAAAAAATGCGAATCAAGACTAGGCTGGGAAATATATCAAGAGAG 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 CAGAAACAACTGGATGAAAAAATGCGAATCAAGACTAGGCTGGGAAATATATCAAGAGAG 1647
Query 1674 CGAGGTAGAAAAGAAATCTTTGCAGATATGAAGGCATTAATTTCTTCGTTCCCCGAGGAA 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 CGAGGTAGAAAAGAAATCTTTGCAGATATGAAGGCATTAATTTCTTCGTTCCCCGAGGAA 1707
Query 1734 ATGAGTTCCATGCGTAGTCAATTAAACAATTATAAAGAGACTGCTGGAGGTATTCATTCT 1793
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1708 ATGAGTTCCATGCGTAATCAATTGGACAATTATAAAGAGACTGCTGGAGGTATTCATTCT 1767
Query 1794 CTGCGGGCTGATGTCCAGTCCCTCTCTGGGGTTCTATGTAGGAAGACAAAAGAGTATGAA 1853
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1768 CTACGGGCTGATGTCCAGTCCCTCTCTGGGGTTCTATGTAGGAAGACAAAAGAGTGTGAA 1827
Query 1854 GCATTGCAATTGAGATCAGCTGATTATGCTTCTCAGTTAGGTGACCTGAATGCTACGGTT 1913
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 GCATTGCATTTGACATCAGCTGATTATGCTTCTCAGTTAGGTGACCTGAATGCTACGGTT 1887
Query 1914 TGTGATTTGAAGAACAGTCATGAGGAGTTAAAGTTGTTTCTGGACATGTATAAACGTGAG 1973
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1888 TGTGATTTGAAGAATAGTCATGAGGAGTTAAAGTTGTTTCTGGACATGTATAAACGTGAG 1947
Query 1974 TCCACTGATGCGAGGGACATAGCTGAAGCCAAGGAACAGGAGTACAGGGCTTGGGCTCAT 2033
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1948 TCCACTGATCCGAGGGACATAGCTGAAGCCAAGGAACAGGAGTACAGGGCTTGGGCTCAT 2007
Query 2034 GTTCAGAGTTTGAAATCATCCCTTGATGAGCAAAATCTGGAGTTGCGCGTTAAGGCAGCA 2093
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 GTTCATAGTTTGAAATCATCCCTTGATGAGCAAAATCTGGAGTTGCGCGTTAAGGCAGCA 2067
Query 2094 AATGAAGCTGAAGCCGTTTCCCAACAAATGTTGGCTGCTGCGGAAGCAGAGATTGCTGAT 2153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2068 AATGAAGCTGAAGCCGTTTCCCAACAAATGTTGGCTGCTGCGGAAGCAGAGATTGCTGAT 2127
Query 2154 TTAAGGCAGAAAATGGATGATTGTAAAAGGGATGTCGCCAAGCATTCTGATATCTTGAAA 2213
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2128 TTAAGGCAGAAAATGGATGATTGTAAACGGGATGTCGCCAAGCATTCTGATATCTTGAAA 2187
Query 2214 TCTAAACATGAAGAACATGGAACATATCTTTCTGAAATACAGACAATTGGAAGTGCCTAT 2273
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 TCTAAACATGAAGAACATGGAACATATCTTTCTGAAATACAGACAATTGGAAGTGCCTAC 2247
Query 2274 GAGGACATTGTACCGCAAAACCAACAGCTTTTGCTTCAAGTTACAGAGAGGGATGACTAT 2333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2248 GAGGACATTGTACCGCAAAACCAACAGCTTTTGCTTCAAGTTACAGAGAGGGATGACTAT 2307
Query 2334 AACATCAAGCTTTTCTTGGAAGGCATAACTTCTAGGCAGATGCAAGATACTCTGCTTATC 2393
|||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 2308 AACATCAAGCTTTTCTTGGAAGGCATAAATTCAAGGCAGATGCAAGATACCCTGCTTATC 2367
Query 2394 GATAAATACATCATGGATAAGGATATACAGCAAGGCAGTGCATATGCCAGTTTCCTATCC 2453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2368 GATAAATACATCATGGATAAGGATATACAGCAAGGCAGTGCATATGCCAGTTTCCTATCC 2427
Query 2454 AAGAAATCATCAAGAATTGAAGATCAGTTGAGGTTCTGCACAGATCAGTTTCAGAAACTA 2513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2428 AAGAAATCATCAAGAATTGAAGATCAGTTGAGGTTCTGCACAGATCAGTTTCAGAAACTA 2487
Query 2514 GCGGAAGATAAATATCAAAAGTCTGTTTCTCTTGAAAATCTGCAAAAGAAACGTGCAGAC 2573
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2488 GCCGAAGATAAATATCAAAAGTCTGTTTCTCTTGAAAATCTGCAAAAGAAACGTGCAGAC 2547
Query 2574 ATCGGGAATGGCTTGGAACAAGCTAGGTCAAGGCTGGAGGAGTCCCATTCTAAAGTTGAG 2633
|| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 2548 ATTGGGAATGGCTTGGAACAAGCTAGGTCGAGGATGGAGGAGTCCCATTCTAAAGTTGAG 2607
Query 2634 CAAAGTCGGCTGGATTATGGGGCATTAGAACTGGAACTGGAGATTGAAAGGTTCAATAGG 2693
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2608 CAAAGTCGGGTGGATTATGGGGCATTAGAACTGGAACTGGAGATTGAAAGGTTCAACAGG 2667
Query 2694 AGAAGGATAGAGGAGGAAATGGAAATAGCCAAAAAGAAAGTTTCTCGTCTTCGGTCTCTC 2753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2668 AGAAGGATAGAGGAGGAAATGGAAATAGCCAAAAAGAAAGTTTCTCGTCTTCGGTCTCTC 2727
Query 2754 ATAGAAGGATCATCGGCCATTCAAAAGCTCCGACAAGAACTCAGTGAATTTAAAGAAATT 2813
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2728 ATAGAAGGATCATCGGCCATTCAAAAGCTCCGACAAGAACTCAGTGAATTCAAAGAAATT 2787
Query 2814 CTGAAGTGTAAGGCCTGCAACGATCGCCCAAAAGAGGTGGTGATTACGAAGTGCTACCAT 2873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2788 CTGAAGTGTAAGGCCTGCAACGATCGCCCAAAAGAGGTGGTGATTACGAAGTGCTACCAT 2847
Query 2874 TTGTTCTGCAACCCATGTGTGCAAAAGCTCACAGGAACTCGACAAAAGAAGTGTCCAACA 2933
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2848 TTGTTCTGTAACCCATGTGTGCAAAAGCTCACAGGAACTCGGCAAAAAAAGTGTCCAACA 2907
Query 2934 TGCTCAGCAAGTTTTGGACCAAATGATATTAAACCTATCTACATATGACCGCACCAAAAC 2993
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 2908 TGCTCAGCAAGTTTTGGGCCTAATGATATTAAACCTATCTACATATGACCACACCAAAAC 2967
Query 2994 ACTCTGAGCATGATGATGTATGATGAAACTGTGAAACACACACAGGTACTTTTTCTCATA 3053
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2968 TCTCTGAGCATGATGATGTATGATGAAACTGTGAACCACACACAGGTACTTTTTCTCATA 3027
Query 3054 TAGGATAAACATTAGATCTCTCTGTAATTATTACTCTCTTTTATTGGGAAAGGTCATGAA 3113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3028 TAGGATAAACATTAGATCTCTCTGTAATTATTACTCTCTTTTATTGGGAAAGGTCATGAA 3087
Query 3114 GAATAATTGG-ATATGGCAAATCAGA-GTTTTTGAGGAACCATTTTGGGATTTT-GATAA 3170
||||||| || ||||||||||||||| ||||| ||||||||||| ||||||||| ||| |
Sbjct 3088 GAATAAT-GGTATATGGCAAATCAGAAGTTTT-GAGGAACCATTGTGGGATTTTTGATCA 3145
Query 3171 TGTGATAGAGAATAGGTAACACTGTTAGGGTTTATGTCTTTGGTGATACTTCCTTTTTGT 3230
||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||
Sbjct 3146 TGTGATAGAGAATAGGTAACACTTTTAGGGTTTATGTCTTTGGCGATCCTTCCTCTTTGT 3205
Query 3231 TTGTAATTTGGAACATGGTTTCCGCAATTGATTTTTCAATTAAATCTTCTTTTTTGTTCT 3290
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 3206 TTGTAATTTGGAACATGGTTTCCGCAATTGATTTTTCAGTTAA-TCTTCTTTTTTGT--- 3261
Query 3291 ACATTTGTGTATGATCCAAACGTTTGTG--AT-G-T--AGTGTTCTAAGATTCTCAATTT 3344
| | | || |||||||| |||| || | | ||||||||||||||||||||||
Sbjct 3262 A--T--G---AT---CCAAACGTGTGTGTTATTGCTCTAGTGTTCTAAGATTCTCAATTT 3311
Query 3345 AGAAAACACGAGGCAAGATTTTGGAT 3370
||||||||||||||||||||||||||
Sbjct 3312 AGAAAACACGAGGCAAGATTTTGGAT 3337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127226466539
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5