BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44970.1
Length=1838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902529 jgi|Araly1|902529|Al_scaffold_0004_3179 2446 0.0
> Ahg902529 jgi|Araly1|902529|Al_scaffold_0004_3179
Length=1521
Score = 2446 bits (1324), Expect = 0.0
Identities = 1460/1524 (96%), Gaps = 15/1524 (1%)
Strand=Plus/Plus
Query 141 ATGTTTCGTTTTGATCCCACATTCCTAAAGCTCCAGAAATTGATCAAAATGGGAGAAGCT 200
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGTTTCGTTTTGATCCCACATTCCTAAAGCTCCAGAAATTGATCAGAATGGGAGAAGCT 60
Query 201 GGTCAATCCAGAGACGGAGAATCTGTCACGCCTCTTGTTGGCGGTGGTAA-TGGGGACAA 259
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 GGTCAATCCAGAGACGGAGAATCTGTCACGCCTCTTGTTGGCGGTGG-AACTGGGGACAA 119
Query 260 TGCGGTTGCACCACAAGTGTTTAATTCTTTACCAGCTCTTAATGAAGCTGCTTCTTATAT 319
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 120 TGCGGTTGCACCACAAGTGTTTAATTCTTTACCAGCTCTCAATGAAGCTGCTTCTTATAT 179
Query 320 AACTCAAGCAACGTCTTACTTAGGG-AGCTGTTTTTCTGACTATTCAGTAGAATATGGTG 378
||| ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||
Sbjct 180 AACCCAAGCAACGTCTTACTT-GGGCAGCTGTTTTTCTGACTATTCAGTTGAATATGGTG 238
Query 379 GCAAGGA------T-A--CTATTTCCCACCCCCATGAGTTGTTACGATCAACTTCCGGAG 429
||||||| | | ||||||| ||||||||||||||| || ||||||| || ||||
Sbjct 239 GCAAGGATTCCTGTAATTCTATTTCACACCCCCATGAGTTGATAAGATCAACATCAGGAG 298
Query 430 TTGACGGGAATTCCCCAGTGAGTGTATGCATTTCGCCTGGTGAAAGGTTTTCAACTTCTT 489
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTGATGGGAATTCCCCAGTGAGTGTATGCATTTCGCCTGGTGAAAGGTTTTCAACTTCTT 358
Query 490 CAGAGGCATCTACATCTGATGCCAACAGCCCGTCGAGGGAATCTACAGAGATTCTGCCAC 549
||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
Sbjct 359 CAGAGGCATCTACGTCTGCTGCCAACAGCCCGTCGAGGGAATCTACAGAGACTCTGCCTC 418
Query 550 AGGCAACAAATGCAATAGTGACTTCGAATCGGTTAAATTTAAATGGAATTTCAATGTTCC 609
||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 419 AGGCAACAAATGCAATAGTGACTTCGAATCGGTTAGGTTTTAATGGAATTTCGATGTTCC 478
Query 610 AAGGGCTCATTGAGCGGGCACGGAGGACTGTTCGTGGCTCGGCAGATGACATAGGATGGT 669
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 AAGGGCTCATTGAGCGGGCACGGAGGACTGTCCGTGGCTCGGCAGATGACATAGGATGGT 538
Query 670 TACAGCGTGCCCCGGAGATGCCTCCTGTTGAAGATGGAACTGATAGGTTCAATAAAATTC 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TACAGCGTGCCCCGGAGATGCCTCCTGTTGAAGATGGAACTGATAGGTTCAATAAAATTC 598
Query 730 TGGAAGACATCGGGCATGGTGTACACAGGCTTCCAAATACAGTGGTGTACTTATTGGTTC 789
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 TGGAGGACATCGGGCATGGTGTACACAGGCTTCCAAATACAGTGGTGTACTTGTTGGTTC 658
Query 790 CAGGTCTTTTCAGCAATCATGGACCTCTATATTTTGTGGATACGAAAACGAAATTCTCAA 849
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTGGTCTTTTCAGCAATCATGGACCTCTATATTTTGTGGATACGAAAACGAAATTCTCAA 718
Query 850 AGATGGGTTTGGCGTGTCATATTGCGAAGATTCACAGCGAGTCCTCGGTTGAGAAAAATG 909
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 719 AGATGGGTTTGGCCTGTCATATTGCGAAGATTCACAGTGAGTCTTCGGTTGAGAAAAATG 778
Query 910 CGAGAGAGATAAAGGAATACATAGAGGAACTCTGTTGGGGATCTAATAAGCGGGTTCTAC 969
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAAGAGAGATAAAGGAATACATAGAGGAACTCTGTTGGGGATCTAATAAGCGGGTTCTAC 838
Query 970 TTCTTGGGCATAGCAAAGGAGGCATAGATGCAGCTGCTGCTTTATCACTATACTGGCCTG 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTCTTGGGCATAGCAAAGGAGGCATAGATGCAGCTGCTGCTTTATCACTATACTGGCCTG 898
Query 1030 AACTAAAGGATAAGGTCGCTGGGTTGGTACTGGCGCAGAGTCCATATGGTGGAAGCCCAA 1089
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 899 AACTAAAGGATAAGGTCGCTGGTTTGGTATTGGCGCAGAGTCCATATGGTGGAAGCCCAA 958
Query 1090 TAGCTACAGATATCCTCCGTGAAGGACAACTAGGTGATTACGTCAATTTGAGAAAGATGA 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TAGCTACAGATATCCTCCGTGAAGGACAACTAGGTGATTACGTCAATTTGAGAAAGATGA 1018
Query 1150 TGGAGATTCTAATCTCCAAAGTCATAAAGGGTGACATTCAAGCATTGGAAGATTTAACAT 1209
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1019 TGGAGATTCTGATCTCCAAAGTCATAAAGGGTGACATTCAAGCTTTGGAAGATTTAACCT 1078
Query 1210 ACGAGAGAAGAAAAGAATTCTTGAAGAATCATCCGCTTCCCCGAGAACTCCCCACGGTTT 1269
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATGAGAGAAGAAAAGAGTTCTTGAAGAATCATCCGCTTCCCCGAGAACTCCCCACGGTTT 1138
Query 1270 CATTCCGCACAGAAGCTAGCATTAGCCCAGCGGTTCTATCCACTTTATCACACGTAGCAC 1329
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1139 CATTCCGCACAGAAGCTAGCATTAGCCCAGCGGTTCTAGCCACTTTGTCACACGTAGCAC 1198
Query 1330 ACGCTGAACTTCCTCTGACAAACCAAGCCGCAAAACTGCCAGTGGTAATGCCACTTGGTG 1389
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1199 ACGCTGAACTCCCTCTGACAAACCAAGCCGCAAAACTGCCAGTGGTAATGCCACTAGGTG 1258
Query 1390 CTGCAATGGCTGCTTGCGCTCAGCTACTTCAAGTCAGATACGGTGAAAAGAGTGACGGGC 1449
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1259 CTGCAATGGCTGCTTGCGCTCAGCTGCTTCAAGTCAGATACGGTGAAAAGAGTGACGGGC 1318
Query 1450 TAGTGACTTGCTGTGACGCAGAGGTTCCTGGTTCTGTGGTTGTTAGACCCAAACGTAAAC 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TAGTGACTTGCTGTGACGCAGAGGTTCCTGGTTCTGTGGTTGTTAGACCCAAACGTAAAC 1378
Query 1510 TAGACCATGCCTGGATGGTGTACTCTTCCTTGAACGAGGTTCCTTTAGAAGCTGATGCTG 1569
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1379 TAGACCATGCCTGGATGGTTTACTCTTCCTTAAACGAGGTTGCTTTAGAAGCTGATGCTG 1438
Query 1570 CTCAAGTTTGTGAAGCGCTCTTAACTTTGCTTGTCCAAGTTGAGCAAGAGAGGCAACAAA 1629
||||||||||||| || ||||| || |||||||||||||||||| |||||| ||||||||
Sbjct 1439 CTCAAGTTTGTGAGGCTCTCTTGACATTGCTTGTCCAAGTTGAGGAAGAGAAGCAACAAA 1498
Query 1630 AACTCGCAAC-AAAAATCGATTGA 1652
|||| || || ||||| |||||||
Sbjct 1499 AACTTGCGACCAAAAA-CGATTGA 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69019523940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5