BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G44990.1
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902531 jgi|Araly1|902531|Al_scaffold_0004_3181 2760 0.0
> Ahg902531 jgi|Araly1|902531|Al_scaffold_0004_3181
Length=1854
Score = 2760 bits (1494), Expect = 0.0
Identities = 1698/1797 (94%), Gaps = 11/1797 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCTCCCTATCCCGCCGAAATTTCTTCCACCGCTAAAATCTCCACCGATTCATCAT 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCTCCCTATCCCGCCGAAATTTCTTCTACCGCTAAAATCTCCACCGATTCATCAT 60
Query 61 CACCAAACTCCGCCACCGCTTGCACCTCCACGAGCCGCAATATCAATATCTATACCAGAC 120
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CACCAAGCTCCGCCACCGCTTGCACCGCCACGAGCCGCAATATCAATATCTATACCAGAA 120
Query 121 ACCGGTTTAGGACGTACCGGTACCATCCTCGACGAGTCCACGTCTTCAGCTTTCCGTGAT 180
||||||||||||||||| || |||||| |||||||||||||||| ||||||||||||||
Sbjct 121 ACCGGTTTAGGACGTACGGGAACCATCATCGACGAGTCCACGTCATCAGCTTTCCGTGAC 180
Query 181 TACCAATCTTTATTCGTGTCACAACGTTCCGAGACTA-TCGAACCGGTCGTAATTAAACC 239
||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||||||
Sbjct 181 TACCAATCTTTATTCGTATCACAACGCTCCGAGAC-AGTCGAACCGGTCGTAATTAAACC 239
Query 240 AATCGAAGGTTCAATACCGGTTAACTTCCCTTCCGGTACATACTACTTAGCCGGTCCAGG 299
|||||| || |||||||||||| | |||||||||||||| || |||||||||||||||||
Sbjct 240 AATCGATGGCTCAATACCGGTTGATTTCCCTTCCGGTACGTATTACTTAGCCGGTCCAGG 299
Query 300 ACTATTTACTGACGACCATGGCTCAACGGTTCATCCTTTAGACGGTCACGGTTATCTCCG 359
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 ACTATTCACTGACGACCATGGCTCAACGGTCCATCCTTTAGACGGTCACGGTTATCTCCG 359
Query 360 TGCGTTTCACATCGACGGTAACAAACGGAAAGCCACTTTCACGGCGAAGTACGTTAAAAC 419
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 360 TGCGTTTCACATCGACGGTAATAAACGAAAAGCCACTTTCACGGCGAAGTATGTTAAAAC 419
Query 420 GGAAGCTAAAAAAGAAGAGCACGATCCTGTAACTGACACGTGGCGGTTCACTCATAGAGG 479
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAAGCTAAAGAAGAAGAGCACGATCCTGTAACTGACACGTGGCGGTTCACTCATAGAGG 479
Query 480 TCCTTTCTCGGTGTTGAAAGGAGGGAAGAGATTTGGAAACACGAAAGTGATGAAAAACGT 539
||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 480 TCCTTTCTCTGTGTTAAAAGGCGGGAAAAGATTTGGAAACACGAAAGTGATGAAAAACGT 539
Query 540 GGCTAATACTAGCGTTTTGAAATGGGCTGGGCGATTGCTTTGTTTATGGGAAGGTGGTGA 599
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 GGCCAATACTAGCGTTTTGAAATGGGCTGGGCGGTTGCTTTGTTTATGGGAAGGTGGTGA 599
Query 600 ACCGTACGAGATTGAATCTGGATCGTTGGATACCGTCGGAAGATTTAACGTCGAGAACAA 659
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||
Sbjct 600 ACCGTACGAGATTGAATCGGGATCGTTGGATACCGTCGGGAGATTTAACGTCGAGATCAA 659
Query 660 CGGTTGTGAATCTTG-TGATGATGATGATTCTTCCGACAGAGATTTATCTGGTCATGATA 718
|||||||| || || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 CGGTTGTG-ATGATGATGATGATGGTGATTCTTCCGACAGAGATTTATCTGGTCATGATA 718
Query 719 TATGGGACACAGCCGCAGATTTGTTGAAACCCATACTTCAAGGTGTATTTAAGATGCCAC 778
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 TATGGGACACAGCCGCAGATTTGTTGAAACCCATACTTCAAGGAGTATTTAAGATGCCAC 778
Query 779 CGAAACGGTTCTTGTCACATTACAAAGTCGACGGTCGAAGAAAAAGACTTTTAACGGTCA 838
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 CGAAACGGTTCTTGTCACATTACAAAGTCGACGGTCGAAGAAATAGACTTTTAACGGTCA 838
Query 839 CTTGCAACGCTGAAGATATGCTTTTACCTCGAAGCAACTTCACATTTTGTGAGTATGATT 898
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 839 CTTGCAACGCTGAAGATATGCTTTTACCTCGAAGCAACTTCTCATTTTGTGAGTATGATT 898
Query 899 CGGAATTCAAGTTGATACAAACGAAAGAATTCAAGATCGATGATCATATGATGATTCATG 958
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 899 CGGAATTCAAGTTGATACAAACGAGAGAATTCAAGATCGATGATCACATGATGATTCATG 958
Query 959 ATTGGGCATTCACGGATACTCACTACATACTCTTTGCCAACCGAGTCAAGCTTAATCCAA 1018
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct 959 ATTGGGCATTCACGGACACTCACTACATACTATTTGCCAACCGAGTCAAGCTTGATCCAC 1018
Query 1019 TAGGTTCCATAGCGGCTATGTGCGGAATGTCACCAATGGTATCAGCGTTATCGTTAAACC 1078
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1019 TTGGTTCCATAGCGGCTATGTGCGGCATGTCACCGATGGTATCAGCGTTATCGTTGAACC 1078
Query 1079 CAAGCAACGAGAGTTCTCCGATTTATATTCTCCCTAGGTTTTCTGATAAATATTCTAGGG 1138
| |||||||||||||| ||||||||||||||||||||||||||||| |||| | | |||
Sbjct 1079 CTAGCAACGAGAGTTCCCCGATTTATATTCTCCCTAGGTTTTCTGAGAAATCTA-TGGGG 1137
Query 1139 GAGGTCGAGACTGGAGAGTTCCTGTCGAAGTGTCTTCTCAATTATGGCTAATACACTCCG 1198
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 GA--TCGAGACTGGAGAGTTCCTGTCGAAGTGTCTTCTCAATTGTGGCTAATACACTCCG 1195
Query 1199 GAAACGCTTATGAGACTAGAGAGGATAACGGCGATTTAAAGATTCAGATACAAGCTTCCG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1196 GAAACGCTTATGAGACTAGAGAGGATAACGGCGATTTAAAGATTCAGATACAAGCGTCTG 1255
Query 1259 CTTGTTCTTACC-GATGGTTCGATTTCCAGAAAATGTTTGGCTATGATTGGCAAAGCAAC 1317
||||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1256 CTTGTTCCTACCAG-TGGTTCGATTTCCAGAAAATGTTTGGCTATGATTGGCAAAGGAAC 1314
Query 1318 AAGCTGGATCCTTCTGTTATGAATCTAAACCGTGGCGACGACAAACTACTCCCTCATCTA 1377
|| ||||||||||||||||||||||| || || || || |||||||||||||||||||||
Sbjct 1315 AATCTGGATCCTTCTGTTATGAATCTGAATCGCGGGGATGACAAACTACTCCCTCATCTA 1374
Query 1378 GTTAAGGTGTCTATGACTTTGGACTCTACCGGAAACTGCAATAGTTGTGATGTAGAGCCT 1437
||||||||||||||||| ||||||||| || | ||||| ||||||||||||||||||
Sbjct 1375 GTTAAGGTGTCTATGACATTGGACTCTTTTGGCGATTGCAAGAGTTGTGATGTAGAGCCT 1434
Query 1438 CTAAACGGGTGGAACAAGCCGTCAGATTTTCCGGTTATAAACTCATCCTGGTCCGGAAAA 1497
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CTAAACGGCTGGAACAAGCCATCAGATTTTCCGGTTATAAACTCATCCTGGTCCGGAAAA 1494
Query 1498 AAGAACAAGTACATGTACTCTGCTGCCTCGTCGGGAACTCGAAGTGAACTTCCCCATTTT 1557
||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1495 AAGAACAAGTACATGTACTCTGCAGCCTCTTCGGGAACTCGAGGTGAACTTCCCCATTTC 1554
Query 1558 CCATTCGACATGGTCGTGAAATTTGACTTAGACTCAAACCTCGTCCGTACTTGGTCTACC 1617
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCATTCGACATGGTCGTGAAGTTTGACTTAGACTCAAACCTCGTCCGTACTTGGTCTACC 1614
Query 1618 GGAGCTAGAAGATTCGTTGGTGAGCCCATGTTTGTCCCAA-AAAACTCTGTTGAAGAAGG 1676
|| ||||||||||||||||||||||||||||||||||||| |||| || | |||||||||
Sbjct 1615 GGGGCTAGAAGATTCGTTGGTGAGCCCATGTTTGTCCCAAGAAAA-TCCGATGAAGAAGG 1673
Query 1677 AGAAGAAGAGGACGATGGTTACATTGTCGTGGTCGAGTATGCGGTTTCGGTGGAGAGATG 1736
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1674 AGAAGAAGAGGACGATGGTTACATTCTCGTGGTTGAGTATGCGGTTTCGGTGGAGAGATG 1733
Query 1737 TTACCTAGTGATTTTGGATGCTAAGAAGATCGGTGAATCCGATGCGGTCGTGTCGAG 1793
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1734 TTACCTTGTGATTTTGGATGCCAAGAAGATCGGTGAATCCGATGCGGTCGTGTCGAG 1790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71000216680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5