BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45000.1
Length=2368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483630 jgi|Araly1|483630|fgenesh2_kg.4__2690__AT2G45000.1 3494 0.0
> Ahg483630 jgi|Araly1|483630|fgenesh2_kg.4__2690__AT2G45000.1
Length=2274
Score = 3494 bits (1892), Expect = 0.0
Identities = 2157/2285 (94%), Gaps = 18/2285 (1%)
Strand=Plus/Plus
Query 41 CCGCAATGTCGGGGTTTCCATTTGGTCAATCCAATTCCGTTGGAGGATTCTCATTCGGAT 100
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 CCGCAATGTCGGGGCTTCCATTTGGTCAATCCAATTCCGTTGGAGGTTTCTCATTCGGAT 60
Query 101 CTTCTTCTGCAACTAATTCCTCTTCTGCTTCATCTACCACTTCTCCGTTATCTTTCTCCT 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTTCTGCAACTAATTCCTCTTCTGCTTCATCTACCACTTCTCCGTTATCTTTCTCCT 120
Query 161 TTAACCAATCTTCAAACCCTAGCTCCACCGGATTCGGTTTCGGATCCTCCGTATCATCAA 220
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 121 TTAACCAATCTTCAAACCCTAGCTCCACCGGATTCGGTTTCGGATCCACCGTCTCATCAA 180
Query 221 CTCCTGCTTCCTCCACTACTCCATCGTTTGGATTCGGAGCTTCCTCTACTCCTTCCTTCG 280
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 181 CTCCTGCTTCCTCCACTACTCCATCGTTTGGATTCGGAGCTTCCTCAACTCCTTCGTTCG 240
Query 281 GATTCGGTTCTTCTGCTTCTTCATCGACTCCATCGTTCGGATTCGGATCTTCTGCCTCCG 340
|||||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 241 GATTCGGTTCCTCTGCTTC---ATCGACTCCATCGTTCGGATTCGGATCCTCTTCCTCCG 297
Query 341 TGACTCCTGCTTCCACAACTCCATCGTTTGGATTTGGAACCGCCGCTTCTTCATCTGCTC 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CGACTCCTGCTTCCACAACTCCATCGTTTGGATTTGGAACCGCCGCTTCTTCATCTGCTT 357
Query 401 CTGCTCCGTCGCTGTTTGGTTCATCTACCACCAATGCTTCTTCAGCTGCTCCTGGTTCTT 460
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 CTGCTCCGTCACTGTTTGGTTCATCTACCACCAATGCTTCTTCTGCTGCTCCTGGTTCTT 417
Query 461 CTCCTTTCGGATTTGTAACTTCCTCGGCCTCTTCCACCG-CAACTCCATCGTCATCTCTA 519
||||||||||||| |||||||| ||||||||||| | || | | || | |||||||
Sbjct 418 CTCCTTTCGGATTCGTAACTTCTTCGGCCTCTTC-AGCGACTGTTTCAGCTTCATCTCCG 476
Query 520 TTTGGAGCTCCCGCTTCTTCCGCCGCAACTCCATCGTCATCTCCATTCGGAGCTGCTCCA 579
||||||||||||||||||||| | ||||||||||| |||||| |||||||| |||||
Sbjct 477 TTTGGAGCTCCCGCTTCTTCCTCTGCAACTCCATCTTCATCTATTTTCGGAGCGGCTCCG 536
Query 580 GCCAGTGGTTCAACACCTCTCTTTGGATCTTCCCCTTCCTTATTCTCTGCTCCTTCATCT 639
|||||||||||| || ||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 537 GCCAGTGGTTCATCATCTCTCTTTGGATCTTCCTCATCCTTATTCTCCGCTCCTTCATCT 596
Query 640 GCCTCCGCCTCTAATTCTTCTCTCTTCGGAGCATCCTCATCCGCCGCTACTTCAACATCT 699
|| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 597 GCTTCCGCCTCGAATTCTTCTCTATTCGGAGCATCCTCATCCGCCGCTGCTTCAACATCC 656
Query 700 CCTCTTTTCGGCGCGCCATCATCAGCCACCGGCGCAACACCGTCCTTTAGCGTGGCCTCA 759
||||||||||| |||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 657 CCTCTTTTCGGTGCGCCAGCATCAGCCACCGGCTCGACACCGTCCTTTAGCGTGGCCTCA 716
Query 760 TCAGCACCTGGCTCCTCATCATCCATCTTTGGAGCTACCGGCTCGTCACCTTCCTTCAGT 819
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 717 ---GCACCTGGCTCATCATCATCCATCTTTGGAGCCACTAGCTCGTCACCTTCCTTCAGT 773
Query 820 GTTGCCTCATCAGCCTCTGGCTCCTCACCGTCAATCTTTGGAGCTACCGGTTCTTCACCG 879
||||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||||||
Sbjct 774 GTTGCCTCATCAGCCTCTGGCTCATCACCGCCAATCTTTGGAGCCACCGGTTCGTCACCG 833
Query 880 T---TCTTTGGTTCGTCTTCTTCAGCCGGTTCAACTCCGTCTCTCTTTGCATCTTCCTCG 936
| |||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 834 TCAATCTTCGGTTCGTCTTCGTCAGCCGGTTCAACTACGTCTCTCTTTGCATCGTCCTCG 893
Query 937 TCAGGCGCAACAACTTCTTCACCATCCCCGTTTGGAGTATCCACCTTCAATTCCTCATCT 996
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 894 TCAGGCACAACAGCTTCTTCACCATCCCCGTTTGGAGTATCCACCATCAATTCCTCAACT 953
Query 997 ACATCCAATACCTCGAATGCCTCAGCTTCTCCATTCTCCGCTTCTACCGGGTTCTCTTTC 1056
|| ||||| ||||| ||||||||||||||| |||||||||||||| || |||||||||
Sbjct 954 GCAACCAATCCCTCGCCTGCCTCAGCTTCTCCTTTCTCCGCTTCTACTGGATTCTCTTTC 1013
Query 1057 TTGAAAAGCACTGCAAGTTCGACCACCAGCTCCACCACTCCTTCTGCTCCTCCACAAACG 1116
||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1014 TTGAAAAGCACAGCAAGTTCGACCACCAGCACCACCACTGCTTCTGCTCCTCCACAAACG 1073
Query 1117 GCTTCATCTTCGTCCTCCTTCTCATTTGGTACATCCGCCAATTCAGGTTTTAACCTTTCA 1176
||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1074 GCTTCATCTTC-T--TCCTTCTCATTTGGTACATCCGCGAATTCAGGTTTTAACCTTTCA 1130
Query 1177 ACCGGAAGCTCCGCAGCACCTGCATCTAGCACATCCGGAGCAGTGTTTTCCATTGCAACC 1236
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1131 ACCGGAAGCTCCGCAGCACCTGCATCCAGCACATCCGGAGCAGTGTTTTCTATTGCAACC 1190
Query 1237 ACCACTACTACTTCTTCTTCGACTCCGGCTGCTACTAGTGCACCAGCTTCTTCAGCTCCC 1296
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1191 ACCACCACCACTTCTTCTTCGACTCCGGCTGCCACTAGTGCACCAGCTTCTTCAGCTGCA 1250
Query 1297 GCTTCTACAATGGCTTTCCCTTCTTTTGGTGTGACTTCATCTGCAACCAACACCACTCCG 1356
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1251 GCTTCTACAATGGCTTTCCCTTCTTTTGGTGTGAGTTCATCTGCAACCAACACCAGTCCG 1310
Query 1357 GCTAGCTCCGCTGCTACATTCAGTACTACAGGATTTGGTTTGGCTAGCTCGACTCCTGCC 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GCTAGCTCCGCTGCTACATTCAGTACTACAGGATTTGGTTTGGCTAGCTCGACTCCTGCC 1370
Query 1417 ACTGGATCTACGAACTCTTTTACTGGGTTTGCTGTACCGAAGACATCAACACCTGCATCA 1476
||||||||||| || ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1371 ACTGGATCTACTAAGTCTTTTATTGGGTTTGCTGTACCGCAGACATCAACACCTGCATCA 1430
Query 1477 TCTTCACAACCACAAACTACTAGTCCTGCATTCTCATTCAGTCTCCCATCTTCGACTTCT 1536
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1431 TCTTCACAACCACAAACTACTAGTCCTGCATTCTCATTCAGTCTTCCATCTTCGACTTCT 1490
Query 1537 ACTACTGCTCCTGCTACTAGTTCTGCTACTACAACACAGACAACTCTTGTTGTTCCTTCA 1596
||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||
Sbjct 1491 ACTACTGCTCCTGCTACTACTTCTGCTACTACAACACAGACATCTCTTGTTGTGCCTTCG 1550
Query 1597 AGTAGTGGGACGAGCACAGCTGTTGCTCCAGTGGCTGGTTCTCCAAAGTTGCCATCTGAA 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 AGTAGTGGGACGAGCACAGCTGTTGCTCCAGTGGCTGGTTCTCCAAAGTTGCCATCTGAA 1610
Query 1657 ATAACTGGCAAAACTGTTGAGGAGATTATCAAGGAGTGGAATACTGAGCTACAAGAGCGC 1716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 ATAACTGGCAAAACTGTTGAGGAGATTATCAAGGAGTGGAATACTGAGCTACAAGAGCGT 1670
Query 1717 ACAGGGAGATTCCGGAAACAGGCAAATGCAATAGCAGAGTGGGATAAGCGGATCTTGCAA 1776
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1671 ACAGGGAGATTCCGGAAACAGGCAAATGCAATTGCAGAGTGGGATAAGCGGATCTTGCAG 1730
Query 1777 AACCGTGATGTTCTTTTGAGACTTGAGATTGAAGTTGCAAAAGTGGTTGAAACCCAATCT 1836
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1731 AACCGTGATGTTCTTTTGAGGCTTGAGATTGAAGTTGCAAAAGTGGTTGAAACCCAATCT 1790
Query 1837 AGCTTGGAACGACAGCTGGAATTAATCGAGACTCATCAGCAAGAGGTTGACAAGGCTTTG 1896
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 AGCTTGGAACGACAGTTGGAATTAATCGAGACTCATCAGCAAGAGGTTGACAAGGCTTTG 1850
Query 1897 CAAAGCATGGAGGAAGAGGCTGAGCGTATATATAATGACGAGCGGAAATCACTTCTGGAC 1956
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1851 CAAAGCATGGAGGAAGAGGCTGAGCGTATATATAATGACGAGCGGAAATCACTTCTTGAC 1910
Query 1957 GATGAAGCAGCATCAACTAGAGATGCAATGTATGAACAGTCTGAGCTAGTAGAAAGAGAA 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 GATGAAGCAGCATCAACTAGAGATGCAATGTATGAACAGTCTGAGCTAGTAGAAAGAGAA 1970
Query 2017 CTGGAGCATATGACTGAACAAATCAGATCGATTATACAATCCGTAAATGCAAACCAGGGT 2076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 TTGGAGCATATGACTGAACAAATCAGATCGATTATACAATCCGTAAATGCAAACCAGGGT 2030
Query 2077 GGAGAACTTGAAGCGATAGATGGGATGAGTCCACTTGATGTAGTTGTCAGAATCTTGAAC 2136
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2031 GGAGAACTTGAAGCAATAGATGGGATGAGTCCACTGGATGTAGTTGTCAGAATCTTGAAC 2090
Query 2137 AATCAACTCAGTTCCTTAATGTGGATTGATGAGAAAGCAGAGGAATTCTCTTCTCGGATT 2196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 AATCAACTCAGTTCCTTAATGTGGATTGATGAGAAAGCAGAGGAATTCTCTTCTCGGATT 2150
Query 2197 CAAAAAATCGCAT-TGCAAGGTTCGGGTGGAGATCGTGAATTGATGGCTCCAAAGCACTG 2255
|| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2151 CAGAAAATCGCATCT-CAAGGTTCTGGTGGAGATCGTGAATTGATGGCTCCAAAGCACTG 2209
Query 2256 GATGTCTTGATAAGAATTACAAAAAC-CA-CATAATCTCAGGAAATGGATTATCTTCTTG 2313
|||||||||||| |||||| |||| | || ||| | ||||||||| | ||||||||||||
Sbjct 2210 GATGTCTTGATATGAATTATAAAATCACATCATCAGCTCAGGAAACGAATTATCTTCTTG 2269
Query 2314 TAGTT 2318
|||||
Sbjct 2270 TAGTT 2274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89207353790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5