BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45010.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483631 jgi|Araly1|483631|fgenesh2_kg.4__2691__AT2G45010.1 1703 0.0
> Ahg483631 jgi|Araly1|483631|fgenesh2_kg.4__2691__AT2G45010.1
Length=1054
Score = 1703 bits (922), Expect = 0.0
Identities = 1016/1059 (96%), Gaps = 16/1059 (2%)
Strand=Plus/Plus
Query 1 ATAGACGAGTCACGACGACTCACGCGTATCGAAACAAAACGTTGTTGTTAGAGAGAAAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAGACGAGTCACGACGACTCACGCGTATCGAAACAAAACGTTGTTGTTAGAGAGAAAAT 60
Query 61 TCCAGTTCTTGGATTCCGGCGACCTCATTGGTGAAAGATCTTCAGAG-----ATTATTAT 115
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 TCCGGTTCTTGGATTCCGGCGACCTCATTGGTGAAAGATCTTCAGAGACTATATTATTAT 120
Query 116 A--TTTCTCTTGACCGGTTTCGATGGCGGATGGAAACGCCAG-TTCGCGTTACGTGAAAT 172
| |||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 121 ACCTTTCTCTTGAGCGGTTTCGATGGCGGATGGAAACGCC-GCGTCGCGTTACGTGAAAT 179
Query 173 TGAGGAAAGAGCAGGCTCCTGTCGAAGAAGATATCACACCCGGTGAACTCAATCAGCCCA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TGAGGAAAGAGCAGGCTCCTGTCGAAGAAGATATCACACCCGGTGAACTCAATCAGCCCA 239
Query 233 TTGATGTTCCTCAGTTGAATGTCCGCAAGTGCCATGAATGTATGCAAGTTCTACCTGAAA 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTGATGTTCCTCAGTTGAATGTCCGCAAGTGCCATGAATGTATGCAAGTTCTACCTGAAA 299
Query 293 CCTATGAACCTCCTTCTGATGAAAACTGGACCACCGGCATTTTTGGTTGTGCTGAAGATC 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTATGAACCTCCTTCTGATGAAAACTGGACCACCGGCATTTTTGGTTGTGCTGAAGATC 359
Query 353 CAGAGAGCTGCAGGACTGGTCTCTTTTGTCCGTGTGTTCTGTTTGGGCGTAACATTGAAG 412
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 360 GAGAGAGCTGCAGGACTGGTCTCTTTTGCCCGTGTGTACTGTTTGGGCGTAACATTGAAG 419
Query 413 CTGTGAGGGAAGAGATTCCTTGGACCCAACCATGTGTATGCCATGCTGTATGTGTCGAAG 472
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 CTGTGAGGGAAGAGATTCCTTGGACCCAACCATGTGTATGCCATGCAATATGTGTCGAAG 479
Query 473 GAGGTATGGCACTTGCAGCAGTAACCGCACTCTTCAGTGGCTACATTGATCCACAAACAA 532
|||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 480 GAGGTATGGCACTTGCAGCAGTCACTGCACTCTTCAGTGGCTACATTGATCCTCAAACAA 539
Query 533 CAGTTGTGATCTGCGAAGGCCTCTTCTTTGCTTGGTGGATGTGTGGAATCTATTCAGGCT 592
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CGGTTGTCATCTGCGAAGGCCTCTTCTTTGCTTGGTGGATGTGTGGAATCTATTCAGGCC 599
Query 593 TGTTCCGCCAAGAACTCCAGAAGAAATATCATCTCAAGAATGCGCCTTGTGATCATTGCA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTTCCGCCAAGAACTCCAGAAGAAATATCATCTCAAGAATGCGCCTTGTGATCATTGCA 659
Query 653 TGGTTCACTGTTGCTTGCACTGGTGTGCTTTGTGCCAGGAACACAGGGAGATGAAGAATC 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGGTTCACTGTTGCTTGCACTGGTGTGCTTTGTGCCAGGAACACAGGGAGATGAAGAATC 719
Query 713 ATCTTTCTGATACAGAAGCCTCATCATCAACTACTATGGATCCTCCCCCAGTTCAAGAGA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATCTTTCTGATACAGAAGCCTCATCATCAACTACTATGGATCCTCCCCCAGTTCAAGAGA 779
Query 773 TGAACACTGAGGAGAGAAGAGACGCTTCATCTTCTTCGTCCTCATCCCCATCATCTGCCA 832
||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 TGAACACAGAGGAGAAAAGAGACGCTTCATCTTCTTCGTCTTCATCCCCATCATCTGCCA 839
Query 833 AAAGCCAACACAATGATCTCGAGATGGTCCCTCTATAGGAAACGTTCCTTATTAATCTCT 892
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 840 AAAGCCAACACAATGATCTCGAGATGGTCCCTCTATAGGAAGCATTCCTTATTAATCTCT 899
Query 893 GCTGCTTATGCT-T-TAAGCTGTTTTTTCTGTGCAGAGAAGTTTTCGTACCAGATGACTC 950
||| |||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 900 GCTACTTATGCTCTATAAGCTGTTTTTTCTGTGCAGAGAGGTTTTCGTACCAGATGATTC 959
Query 951 TATTG-TCCTTAGGTTTTAAATATGCAAAAGTTTGTTCTAAGAACAAGTTCAATAGTACT 1009
| ||| || ||||||||||||||||||||||| |||| |||||||||||||| ||||| |
Sbjct 960 TGTTGCTC-TTAGGTTTTAAATATGCAAAAGTATGTTTTAAGAACAAGTTCATTAGTA-T 1017
Query 1010 CTTAAGTTTTACAGAACTTAAATTCATGACTTCATTGAA 1048
| ||||||||||||| ||||||||||||||||||||||
Sbjct 1018 -T-AAGTTTTACAGAATTTAAATTCATGACTTCATTGAA 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5