BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45040.1 Length=1265 Score E Sequences producing significant alignments: (Bits) Value Ahg483635 jgi|Araly1|483635|fgenesh2_kg.4__2695__AT2G45040.1 1670 0.0 > Ahg483635 jgi|Araly1|483635|fgenesh2_kg.4__2695__AT2G45040.1 Length=1225 Score = 1670 bits (904), Expect = 0.0 Identities = 1157/1268 (91%), Gaps = 62/1268 (5%) Strand=Plus/Plus Query 8 AAAATAACAAAACATCTCTTCACTTCtcatcacaccatgcatcatcatcatcatccatGC 67 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 AAAA-AACAAAACATCTCTTCACTTCACATCACACCATGCATCATCATCATCATCCATGC 59 Query 68 AATCGCAAACCCTTCACAACCATCTTCTCCTTCTTCCTTCTCTATCTCAATCTCCATAAC 127 |||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||| Sbjct 60 AATCGCAAACCCTTCACAACTATCTTCTTCGTCTCCCTTCTCTATCTCAATCTCCATAAC 119 Query 128 CAACAAATTATCGAAGCTCGAAATCCATCTCAATTTACGACCAACCCATCCCCTGACGTC 187 | || | |||| | ||| | | | | ||| |||||||||||||||||| Sbjct 120 C--CACA-TATC--A--TCG--A---A--GC----T-CGA--AACCCATCCCCTGACGTC 158 Query 188 TCTATACCGGAAATCAAACGTCACCTCCAACAGTACGGTTACCTCCCACAAAACAAA-GA 246 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || Sbjct 159 TCTATACCGGAAATCAAACGTCACCTTCAACAGTACGGTTACCTCCCACAAAA-AAACGA 217 Query 247 ATCCGACGACGTTTCGTTCGAACAAGCTCTCGTTCGTTACCAGAAAAATCTCGGTCTACC 306 | ||||||| |||| |||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 218 ACCCGACGATGTTTTGTTCGAGCAAGCTCTCGCTCGTTACCAGAAAAATCTCGGTCTACC 277 Query 307 AATAACCGGTAAACCGGATTCCGACACGTTGTCACAGATTCTATTACCAAGATGTGGGTT 366 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 278 GATAACCGGGAAACCAGATTCCGACACGTTGTCACAGATTCTATTACCAAGATGTGGATT 337 Query 367 CCCTGATGACGTGGAACCCAAAACGGCACCGTTTCACACAGGaaaaaaaTACGTGTACTT 426 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 338 CCCTGATGACGTGGAACCCAAAACGGCACCGTTTCACACAGGGAAAAAATACGTGTACTT 397 Query 427 CCCCGGACGGCCCAGGTGGACAAGAGACGTCCCACTGAAACTCACGTACGCCTTCTCGCA 486 ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 398 CCCTGGACGGCCCAGGTGGACAAGAGACGTCCCACTGAAACTTACGTACGCCTTCTCACA 457 Query 487 GGAGAACCTAACTCCTTACTTAGCACCAACTGACATACGGCGCGTGTTCCGACGCGCTTT 546 |||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 458 GGAGAACCTAACCCCATACTTAGCACCAACAGACATTCGGCGCGTGTTCCGACGCGCTTT 517 Query 547 CGGCAAGTGGGCTTCGGTGATCCCAGTATCCTTCATCGAAACAGAGGATTACGTCATCGC 606 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 518 CGGCAAGTGGGCTTCGGTGATCCCCGTAACCTTCATCGAAACAGAGGATTACGTCATCGC 577 Query 607 CGACATCAAGATCGGATTCTTCAACGGAGATCACGGCGACGGAGAACCGTTCGACGGCGT 666 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 578 CGACATCAAGATCGGATTCTTCAACGGAGATCACGGCGACGGAGAGCCGTTCGACGGCGT 637 Query 667 TTTAGGTGTTTTAGCACACACTTTCTCTCCGGAAAACGGTAGGCTTCATCTAGACAAAGC 726 ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 638 TTTAGGTGTTTTAGCTCACACTTTCTCGCCGGAAAACGGTAGGCTTCACCTAGACAAAGC 697 Query 727 AGAGACGTGGGCCGTAGATTTCGATGAGGAAAAATCTA-GTGTGGCCGTCGATTTGGAAT 785 ||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||| | Sbjct 698 AGAGACGTGGGCCGTTGATTTCAATGAGGAAAAATCTACG-GTGGCCGTCGATTTGGAGT 756 Query 786 CTGTGGCGGTGCACGAGATCGGTCACGTGCTTGGA-TTAGGACATAGCTCGGTGAAAGAC 844 ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 757 CTGTGGCGGTGCACGAGATCGGTCACGTGCTTGGACTT-GGCCATAGCTCGGTGAAAGAC 815 Query 845 GCGGCTATGTATCCAACTTTAAAGCCAAGAAGTAAGAAAGTGAATTTGAATATGGACGAC 904 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 816 GCGGCTATGTATCCAACTTTGAAGCCAAGAAGTAAGAAAGTGAATTTGAATATGGACGAC 875 Query 905 GTCGTTGGAGTACAGTCTTTGTACGGAACAAACCCTAATTTCACGTTAAATAGTTTACTT 964 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 876 GTCGTTGGAGTACAGTCTTTGTACGGAACAAACCCTAATTTCACGTTAAGTAGTTTACTT 935 Query 965 GCGTCGGAAACTTCGACAAATCTAGCCGATG--G-TTCGAGGATACGGTCTCAAGGAATG 1021 ||||||||||||||||| || |||||||||| | ||||| || |||||||||||||||| Sbjct 936 GCGTCGGAAACTTCGACCAACCTAGCCGATGATGGTTCGATGAGACGGTCTCAAGGAATG 995 Query 1022 ATCTATTCGACTTTGAGTACTGTTATCGCTCTCTGTTTTCTTAATTGGTAGTTCGTAGAC 1081 |||||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 996 ATCTATTCGACTTTGAGTACAGTTATCGCTCTCTGTTTTCTTAATTGGTAG-----A-A- 1048 Query 1082 TTAGATAATTTTCTTTATACAAGAAATCCGAAAACGTATAGAA---TCATACAGACGCAT 1138 || || |||||||||||||||| |||||||||||||| |||||||||| ||| Sbjct 1049 TT---TA-----CTTTATACAAGAAATCTGAAAACGTATAGAAGAATCATACAGACACAT 1100 Query 1139 GAA--TT-T------GTTGTTCAAAGTAGTAGTCTAATCCTATGTTTCTGTTTAGAATAA 1189 ||| || | |||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 1101 GAAAATTATTAATTTGTTGTTCAAAGTAGTAGTCTAATCTTATGTTTATGTTTAGAATAA 1160 Query 1190 TACCAT-GTTCTTTTTTAGTTTATATTAGATTGGGCTTCAAGTTATACGGCCCAATAGAA 1248 | || |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 1161 --C-ATTGTTCTTTTTTAGTTTATATTTGATTGGGCTTCAAATTATACGGCCCAATAGAA 1217 Query 1249 TGCTAATG 1256 |||| ||| Sbjct 1218 TGCTGATG 1225 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47272417080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5