BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45040.1
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483635 jgi|Araly1|483635|fgenesh2_kg.4__2695__AT2G45040.1 1670 0.0
> Ahg483635 jgi|Araly1|483635|fgenesh2_kg.4__2695__AT2G45040.1
Length=1225
Score = 1670 bits (904), Expect = 0.0
Identities = 1157/1268 (91%), Gaps = 62/1268 (5%)
Strand=Plus/Plus
Query 8 AAAATAACAAAACATCTCTTCACTTCtcatcacaccatgcatcatcatcatcatccatGC 67
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 AAAA-AACAAAACATCTCTTCACTTCACATCACACCATGCATCATCATCATCATCCATGC 59
Query 68 AATCGCAAACCCTTCACAACCATCTTCTCCTTCTTCCTTCTCTATCTCAATCTCCATAAC 127
|||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||||
Sbjct 60 AATCGCAAACCCTTCACAACTATCTTCTTCGTCTCCCTTCTCTATCTCAATCTCCATAAC 119
Query 128 CAACAAATTATCGAAGCTCGAAATCCATCTCAATTTACGACCAACCCATCCCCTGACGTC 187
| || | |||| | ||| | | | | ||| ||||||||||||||||||
Sbjct 120 C--CACA-TATC--A--TCG--A---A--GC----T-CGA--AACCCATCCCCTGACGTC 158
Query 188 TCTATACCGGAAATCAAACGTCACCTCCAACAGTACGGTTACCTCCCACAAAACAAA-GA 246
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 159 TCTATACCGGAAATCAAACGTCACCTTCAACAGTACGGTTACCTCCCACAAAA-AAACGA 217
Query 247 ATCCGACGACGTTTCGTTCGAACAAGCTCTCGTTCGTTACCAGAAAAATCTCGGTCTACC 306
| ||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 218 ACCCGACGATGTTTTGTTCGAGCAAGCTCTCGCTCGTTACCAGAAAAATCTCGGTCTACC 277
Query 307 AATAACCGGTAAACCGGATTCCGACACGTTGTCACAGATTCTATTACCAAGATGTGGGTT 366
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 278 GATAACCGGGAAACCAGATTCCGACACGTTGTCACAGATTCTATTACCAAGATGTGGATT 337
Query 367 CCCTGATGACGTGGAACCCAAAACGGCACCGTTTCACACAGGaaaaaaaTACGTGTACTT 426
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 338 CCCTGATGACGTGGAACCCAAAACGGCACCGTTTCACACAGGGAAAAAATACGTGTACTT 397
Query 427 CCCCGGACGGCCCAGGTGGACAAGAGACGTCCCACTGAAACTCACGTACGCCTTCTCGCA 486
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 398 CCCTGGACGGCCCAGGTGGACAAGAGACGTCCCACTGAAACTTACGTACGCCTTCTCACA 457
Query 487 GGAGAACCTAACTCCTTACTTAGCACCAACTGACATACGGCGCGTGTTCCGACGCGCTTT 546
|||||||||||| || |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 458 GGAGAACCTAACCCCATACTTAGCACCAACAGACATTCGGCGCGTGTTCCGACGCGCTTT 517
Query 547 CGGCAAGTGGGCTTCGGTGATCCCAGTATCCTTCATCGAAACAGAGGATTACGTCATCGC 606
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 518 CGGCAAGTGGGCTTCGGTGATCCCCGTAACCTTCATCGAAACAGAGGATTACGTCATCGC 577
Query 607 CGACATCAAGATCGGATTCTTCAACGGAGATCACGGCGACGGAGAACCGTTCGACGGCGT 666
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 578 CGACATCAAGATCGGATTCTTCAACGGAGATCACGGCGACGGAGAGCCGTTCGACGGCGT 637
Query 667 TTTAGGTGTTTTAGCACACACTTTCTCTCCGGAAAACGGTAGGCTTCATCTAGACAAAGC 726
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 638 TTTAGGTGTTTTAGCTCACACTTTCTCGCCGGAAAACGGTAGGCTTCACCTAGACAAAGC 697
Query 727 AGAGACGTGGGCCGTAGATTTCGATGAGGAAAAATCTA-GTGTGGCCGTCGATTTGGAAT 785
||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||| |
Sbjct 698 AGAGACGTGGGCCGTTGATTTCAATGAGGAAAAATCTACG-GTGGCCGTCGATTTGGAGT 756
Query 786 CTGTGGCGGTGCACGAGATCGGTCACGTGCTTGGA-TTAGGACATAGCTCGGTGAAAGAC 844
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 757 CTGTGGCGGTGCACGAGATCGGTCACGTGCTTGGACTT-GGCCATAGCTCGGTGAAAGAC 815
Query 845 GCGGCTATGTATCCAACTTTAAAGCCAAGAAGTAAGAAAGTGAATTTGAATATGGACGAC 904
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 816 GCGGCTATGTATCCAACTTTGAAGCCAAGAAGTAAGAAAGTGAATTTGAATATGGACGAC 875
Query 905 GTCGTTGGAGTACAGTCTTTGTACGGAACAAACCCTAATTTCACGTTAAATAGTTTACTT 964
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 876 GTCGTTGGAGTACAGTCTTTGTACGGAACAAACCCTAATTTCACGTTAAGTAGTTTACTT 935
Query 965 GCGTCGGAAACTTCGACAAATCTAGCCGATG--G-TTCGAGGATACGGTCTCAAGGAATG 1021
||||||||||||||||| || |||||||||| | ||||| || ||||||||||||||||
Sbjct 936 GCGTCGGAAACTTCGACCAACCTAGCCGATGATGGTTCGATGAGACGGTCTCAAGGAATG 995
Query 1022 ATCTATTCGACTTTGAGTACTGTTATCGCTCTCTGTTTTCTTAATTGGTAGTTCGTAGAC 1081
|||||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 996 ATCTATTCGACTTTGAGTACAGTTATCGCTCTCTGTTTTCTTAATTGGTAG-----A-A- 1048
Query 1082 TTAGATAATTTTCTTTATACAAGAAATCCGAAAACGTATAGAA---TCATACAGACGCAT 1138
|| || |||||||||||||||| |||||||||||||| |||||||||| |||
Sbjct 1049 TT---TA-----CTTTATACAAGAAATCTGAAAACGTATAGAAGAATCATACAGACACAT 1100
Query 1139 GAA--TT-T------GTTGTTCAAAGTAGTAGTCTAATCCTATGTTTCTGTTTAGAATAA 1189
||| || | |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1101 GAAAATTATTAATTTGTTGTTCAAAGTAGTAGTCTAATCTTATGTTTATGTTTAGAATAA 1160
Query 1190 TACCAT-GTTCTTTTTTAGTTTATATTAGATTGGGCTTCAAGTTATACGGCCCAATAGAA 1248
| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1161 --C-ATTGTTCTTTTTTAGTTTATATTTGATTGGGCTTCAAATTATACGGCCCAATAGAA 1217
Query 1249 TGCTAATG 1256
|||| |||
Sbjct 1218 TGCTGATG 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47272417080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5