BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45050.1 Length=1119 Score E Sequences producing significant alignments: (Bits) Value Ahg935453 jgi|Araly1|935453|scaffold_403441.1 1493 0.0 Ahg916168 jgi|Araly1|916168|Al_scaffold_0008_919 274 1e-72 > Ahg935453 jgi|Araly1|935453|scaffold_403441.1 Length=961 Score = 1493 bits (808), Expect = 0.0 Identities = 933/988 (94%), Gaps = 30/988 (3%) Strand=Plus/Plus Query 68 TCAATCATAATCTATAACAATGGACGTCTATGGCTTATCTTCACCAGACTTACTTCGAAT 127 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2 TCAACCATAATCTATAACAATGGACGTTTATGGCTTATCTTCACCAGACTTACTTCGAAT 61 Query 128 CGACGACCTTCTTGATTTCTCCAACGAAGACAtcttctccgcttcttcttccggtggttc 187 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 62 CGACGACCTTCTTGATTTCTCCAACGAAGACATCTTCTCCGCCTCTTCTTCCGGTGGTTC 121 Query 188 caccgccgctacttcctcttcttctttccctcctcctCAAAACCCTAGTTTCCACCACCA 247 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 122 CACCGCCGCTACTTCCTCTTCTTCTTTCCCTCCTCCTCAAAACCCTAATTTCCACCACCA 181 Query 248 CCATCTCCCTTCCTCCGCCGATCATCACTCCTTCCTCCACGACATTTGCGTTCCCAGTGA 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 CCATCTCCCTTCCTCCGCCGATCATCACTCCTTCCTCCACGACATTTGCGTTCCCAGTGA 241 Query 308 TGACGCAGCTCATCTTGAATGGCTTTCGCAATTCGTGGACGATTCTTTCGCTGATTTTCC 367 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 242 TGACGCAGCTCATCTTGAATGGCTTTCGCAATTCGTAGACGATTCTTTCGCTGATTTTCC 301 Query 368 GGCGAATCCATTAGGAGGAACTATGACTTCTGTCAAAACTGAAACTTCCTTTCCGGGGAA 427 |||||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||||| Sbjct 302 GGCGAATCCATTAGGAGGAACTATGACTTCGGCCAAAACTGAAACTTCATTTCCTGGGAA 361 Query 428 ACCAAGAAGCAAACGATCAAGAGCTCCTGCTCCTTTCGCCGGAACATGGTCTCCGATGCC 487 |||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||| Sbjct 362 ACCAAGAAGCAAACGATCAAGAGCTCCTGCTCTTTTCGCCGGAACATGGTCACAGATGCC 421 Query 488 -ACTGGAATCCGAGCATCAGCAGCTTCACTCCGCCGCCAAATTCAAGCCAAAGAAAGAAC 546 || ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 422 AAC-GGAATCCGAGCATCATCAGCTTCACTCCGCCGCGAAATTCAAGCCAAAGAAAGAAC 480 Query 547 AATCCGGCggaggaggaggaggaggaggaagacatcagtcatcgtcatcggagactacgg 606 || | | ||||||||||||||||||||||||||||| |||||||||||| | ||| Sbjct 481 -ATTC--C---GGAGGAGGAGGAGGAGGAAGACATCAGTCTTCGTCATCGGAGTCGGCGG 534 Query 607 aaggaggaggaatgaggagATGTACTCACTGTGCATCGGAGAAAACGCCACAGTGGAGGA 666 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 535 AAGGAGGAGGAATGAGGAGATGTACTCACTGTGCATCGGAGAAGACGCCACAATGGAGGA 594 Query 667 CAGGACCACTTGGACCTAAAACACTATGTAACGCTTGTGGAGTCCGGTTTAAATCCGGTA 726 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 595 CAGGACCACTAGGACCTAAAACGCTATGTAACGCTTGTGGAGTCCGGTTTAAATCCGGTA 654 Query 727 GACTTGTACCGGAATATAGACCGGCTTCGAGTCCTACTTTTGTTTTGACTCAGCATTCAA 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 GACTTGTACCGGAATATAGACCGGCTTCGAGTCCTACTTTTGTTTTGACTCAGCATTCAA 714 Query 787 ACTCTCACCGGAAAGTGATGGAGCTTCGACGGCAGAAAGAAGTTATGAGACAACCACAAC 846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 715 ACTCTCACCGGAAAGTGATGGAGCTTCGACGGCAGAAAGAAGTTATGAGACAACCACAAC 774 Query 847 AAGTTCAACTTCATCACCACCACCACCCGTTTTAGTTTTCACTTTTCACTGCCTCGTCCG 906 |||||||||||||||||||||||||||||||||||||| | | ||||||||||||| Sbjct 775 AAGTTCAACTTCATCACCACCACCACCCGTTTTAGTTT-C-C-----ACTGCCTCGTCCG 827 Query 907 TCGTCACTCttttttttgtttttctttttggttcttggggttgggttttggg-tAACGTC 965 ||||| ||||||||||| | ||||||||||||||||||||| ||||||| Sbjct 828 TCGTC--TCTTTTTTTTG-----------G-TTCTTGGGGTTGGGTTTTGGGGTAACGTC 873 Query 966 ACGTGATGATGACGTGTCGCGATCCTAGCGGCGTTAATCACGTGACCGACGACGACGGGA 1025 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 874 ACGTGATGATGACGTGTCGCGATCCTAGCGGCGTTAATCACGTGACCGACGACGACGGGA 933 Query 1026 GCCTAAAATTTTTAGTGAACGTTGGAAA 1053 ||||||||||||||| |||||||| ||| Sbjct 934 GCCTAAAATTTTTAGCGAACGTTGCAAA 961 > Ahg916168 jgi|Araly1|916168|Al_scaffold_0008_919 Length=348 Score = 274 bits (148), Expect = 1e-72 Identities = 174/186 (94%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 117 TTACTTCGAATCGACGACCTTCTTGATTTCTCCAACGAAGACAtcttctccgcttcttct 176 ||||||||||||||| ||||||||||||||||||||||||| ||||||||| | | |||| Sbjct 348 TTACTTCGAATCGACAACCTTCTTGATTTCTCCAACGAAGATATCTTCTCCACGTATTCT 289 Query 177 tccggtggttccaccgccgctacttcctcttcttctttccctcctcctCAAAACCCTAGT 236 ||| |||||||||||||||||| |||||||| |||||| | |||||||||||||||| | Sbjct 288 TCCTGTGGTTCCACCGCCGCTAGTTCCTCTTTTTCTTT--C-CCTCCTCAAAACCCTAAT 232 Query 237 TTCCACCACCACCATCTCCCTTCCTCCGCCGATCATCACTCCTTCCTCCACGACATTTGC 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 TTCCACCACCACCATCTCCCTTCCTCCGCCGATCATCACTCCTTCCTCCACGACATTTGC 172 Query 297 GTTCCC 302 |||||| Sbjct 171 GTTCCC 166 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41706471198 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5