BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45050.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935453 jgi|Araly1|935453|scaffold_403441.1 1493 0.0
Ahg916168 jgi|Araly1|916168|Al_scaffold_0008_919 274 1e-72
> Ahg935453 jgi|Araly1|935453|scaffold_403441.1
Length=961
Score = 1493 bits (808), Expect = 0.0
Identities = 933/988 (94%), Gaps = 30/988 (3%)
Strand=Plus/Plus
Query 68 TCAATCATAATCTATAACAATGGACGTCTATGGCTTATCTTCACCAGACTTACTTCGAAT 127
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2 TCAACCATAATCTATAACAATGGACGTTTATGGCTTATCTTCACCAGACTTACTTCGAAT 61
Query 128 CGACGACCTTCTTGATTTCTCCAACGAAGACAtcttctccgcttcttcttccggtggttc 187
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 62 CGACGACCTTCTTGATTTCTCCAACGAAGACATCTTCTCCGCCTCTTCTTCCGGTGGTTC 121
Query 188 caccgccgctacttcctcttcttctttccctcctcctCAAAACCCTAGTTTCCACCACCA 247
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 122 CACCGCCGCTACTTCCTCTTCTTCTTTCCCTCCTCCTCAAAACCCTAATTTCCACCACCA 181
Query 248 CCATCTCCCTTCCTCCGCCGATCATCACTCCTTCCTCCACGACATTTGCGTTCCCAGTGA 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CCATCTCCCTTCCTCCGCCGATCATCACTCCTTCCTCCACGACATTTGCGTTCCCAGTGA 241
Query 308 TGACGCAGCTCATCTTGAATGGCTTTCGCAATTCGTGGACGATTCTTTCGCTGATTTTCC 367
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 242 TGACGCAGCTCATCTTGAATGGCTTTCGCAATTCGTAGACGATTCTTTCGCTGATTTTCC 301
Query 368 GGCGAATCCATTAGGAGGAACTATGACTTCTGTCAAAACTGAAACTTCCTTTCCGGGGAA 427
|||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||||
Sbjct 302 GGCGAATCCATTAGGAGGAACTATGACTTCGGCCAAAACTGAAACTTCATTTCCTGGGAA 361
Query 428 ACCAAGAAGCAAACGATCAAGAGCTCCTGCTCCTTTCGCCGGAACATGGTCTCCGATGCC 487
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 362 ACCAAGAAGCAAACGATCAAGAGCTCCTGCTCTTTTCGCCGGAACATGGTCACAGATGCC 421
Query 488 -ACTGGAATCCGAGCATCAGCAGCTTCACTCCGCCGCCAAATTCAAGCCAAAGAAAGAAC 546
|| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 422 AAC-GGAATCCGAGCATCATCAGCTTCACTCCGCCGCGAAATTCAAGCCAAAGAAAGAAC 480
Query 547 AATCCGGCggaggaggaggaggaggaggaagacatcagtcatcgtcatcggagactacgg 606
|| | | ||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 481 -ATTC--C---GGAGGAGGAGGAGGAGGAAGACATCAGTCTTCGTCATCGGAGTCGGCGG 534
Query 607 aaggaggaggaatgaggagATGTACTCACTGTGCATCGGAGAAAACGCCACAGTGGAGGA 666
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 535 AAGGAGGAGGAATGAGGAGATGTACTCACTGTGCATCGGAGAAGACGCCACAATGGAGGA 594
Query 667 CAGGACCACTTGGACCTAAAACACTATGTAACGCTTGTGGAGTCCGGTTTAAATCCGGTA 726
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 595 CAGGACCACTAGGACCTAAAACGCTATGTAACGCTTGTGGAGTCCGGTTTAAATCCGGTA 654
Query 727 GACTTGTACCGGAATATAGACCGGCTTCGAGTCCTACTTTTGTTTTGACTCAGCATTCAA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GACTTGTACCGGAATATAGACCGGCTTCGAGTCCTACTTTTGTTTTGACTCAGCATTCAA 714
Query 787 ACTCTCACCGGAAAGTGATGGAGCTTCGACGGCAGAAAGAAGTTATGAGACAACCACAAC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ACTCTCACCGGAAAGTGATGGAGCTTCGACGGCAGAAAGAAGTTATGAGACAACCACAAC 774
Query 847 AAGTTCAACTTCATCACCACCACCACCCGTTTTAGTTTTCACTTTTCACTGCCTCGTCCG 906
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 775 AAGTTCAACTTCATCACCACCACCACCCGTTTTAGTTT-C-C-----ACTGCCTCGTCCG 827
Query 907 TCGTCACTCttttttttgtttttctttttggttcttggggttgggttttggg-tAACGTC 965
||||| ||||||||||| | ||||||||||||||||||||| |||||||
Sbjct 828 TCGTC--TCTTTTTTTTG-----------G-TTCTTGGGGTTGGGTTTTGGGGTAACGTC 873
Query 966 ACGTGATGATGACGTGTCGCGATCCTAGCGGCGTTAATCACGTGACCGACGACGACGGGA 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ACGTGATGATGACGTGTCGCGATCCTAGCGGCGTTAATCACGTGACCGACGACGACGGGA 933
Query 1026 GCCTAAAATTTTTAGTGAACGTTGGAAA 1053
||||||||||||||| |||||||| |||
Sbjct 934 GCCTAAAATTTTTAGCGAACGTTGCAAA 961
> Ahg916168 jgi|Araly1|916168|Al_scaffold_0008_919
Length=348
Score = 274 bits (148), Expect = 1e-72
Identities = 174/186 (94%), Gaps = 3/186 (2%)
Strand=Plus/Minus
Query 117 TTACTTCGAATCGACGACCTTCTTGATTTCTCCAACGAAGACAtcttctccgcttcttct 176
||||||||||||||| ||||||||||||||||||||||||| ||||||||| | | ||||
Sbjct 348 TTACTTCGAATCGACAACCTTCTTGATTTCTCCAACGAAGATATCTTCTCCACGTATTCT 289
Query 177 tccggtggttccaccgccgctacttcctcttcttctttccctcctcctCAAAACCCTAGT 236
||| |||||||||||||||||| |||||||| |||||| | |||||||||||||||| |
Sbjct 288 TCCTGTGGTTCCACCGCCGCTAGTTCCTCTTTTTCTTT--C-CCTCCTCAAAACCCTAAT 232
Query 237 TTCCACCACCACCATCTCCCTTCCTCCGCCGATCATCACTCCTTCCTCCACGACATTTGC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TTCCACCACCACCATCTCCCTTCCTCCGCCGATCATCACTCCTTCCTCCACGACATTTGC 172
Query 297 GTTCCC 302
||||||
Sbjct 171 GTTCCC 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5