BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45060.1
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935454 jgi|Araly1|935454|scaffold_403442.1 1467 0.0
> Ahg935454 jgi|Araly1|935454|scaffold_403442.1
Length=859
Score = 1467 bits (794), Expect = 0.0
Identities = 837/858 (98%), Gaps = 2/858 (0%)
Strand=Plus/Plus
Query 71 TTGGAGAGATCTTTTCTAATGGCAGCGTTGGGAGAATCATCATCCTCAGAGATGGACAAC 130
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3 TTGGAGAGATCTTTTCTAATGGCAGCCTTGGGAGAATCATCATCCTCAGAGATGGACAAC 62
Query 131 GCGAAAT-CGCCGGAGATTCAACAATCTTCGCCAGTGCATCCGCCGGAGTATCAGAAGAT 189
||| ||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 63 GCG-AATCCGCCGGAGATTCCTCAATCTTCGCCAGTGCACCCGCCGGAGTATCAGAAGAT 121
Query 190 CGCAACGACGACGGTGGAAAATGCGGCTTCCTGGATCGATGATGCGTTGCGTCAGGCGCT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CGCAACGACGACGGTGGAAAATGCGGCTTCCTGGATCGATGATGCGTTGCGTCAGGCGCT 181
Query 250 TGTTTACCAGAAGACGATCACGGAGACGGTGGATTCTACCATTGACGCCTCCAAAGCTCG 309
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 182 TGTATACCAGAAGACGATCACGGAGACGGTGGATTCTACCATTGACGCCTCCAAAGCTAG 241
Query 310 ATTGTCTCAGATTCGAGATACTTCTGTAGCTCACACGAGCCAAACCATCGATTCTCTTCG 369
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 242 ATTGTCTCAGATTCGAGATACTTCTGTAGCTCACACAAGCCAAACCATTGATTCTCTTCG 301
Query 370 AGACATTGCTTCTGAGTATAACGTTTACGAGCAAATGGTGTTTGGGAAGATCAAAGATGG 429
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 302 AGAGATTGCTTCTGAGTATAACGTTTACGAGCAAATGGTGTTTGGGAAAATTAAAGATGG 361
Query 430 TGTGAATGTTGCTGCATCTCATCCGCTAATATCAGGCACCTTAGCTTTTGGAGTTGGGAT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TGTGAATGTTGCTGCATCTCATCCGCTAATATCAGGCACCTTAGCTTTTGGAGTTGGGAT 421
Query 490 TTTTGCTCTGAAAAAGACCAGAAGATTTGTATATTACAATACTGTACGCATGTTTGTTAG 549
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 TTTTGCTCTGAAAAAGACAAGAAGATTTGTATATTACAATACTGTACGCATGTTTGTAAG 481
Query 550 TGAAGAGGCTTTGCTTTCTAGAGCAGATCTTAAAGTAAAAGAGTTGCGACAATCAATGGA 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGAAGAGGCTTTGCTTTCTAGAGCAGATCTTAAAGTAAAAGAGTTGCGACAATCAATGGA 541
Query 610 TCGTCTTAAAGCCGAGAGTGAAAAGTTAGAGAGAGTTGCAACTGTGGCAGAAGAGGAATT 669
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 542 TCGTCTTAAAGCCGAGAGTGAAAAATTAGAGAGAGTCGCAACTGTGGCAGAAGAGGAATT 601
Query 670 CATTAGAGGAAGGATGAAACTCAGGCAAGCAGGCAAACAAATCAGAGGTGCGATCAGCTC 729
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GATTAGAGGAAGGATGAAACTCAGGCAAGCAGGCAAACAAATCAGAGGTGCGATCAGCTC 661
Query 730 AGCTTATAAGATTGAAAAGCAAGCAGCAGGTTTGAAAGATGTACTAAAAGAACTGCCAAC 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AGCTTATAAGATTGAAAAGCAAGCAGCAGGTTTGAAAGATGTACTAAAAGAACTGCCAAC 721
Query 790 GAGAGAAGCTTCTCGATTCCGCACTCAAATATCGAAGCGTGCTTCTGAAGTGAAGCAAGA 849
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 722 GAGAGAAGCTTCTCGATTCCGCACTCAAATATCGAACCGTGCTTCTGAAGTGAAGCAAGA 781
Query 850 GAGAAACGCTTTGACAAAGGAAGTGAACAAGATCAGCAATTATGGTATCTCCGTATGAGG 909
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 782 GAGAAACGCTTTGACAAAGGAAGTGAACAAGATCAGCAACTATGGTATCTCTGTATGAGG 841
Query 910 CAAACCAAACCCCATTTT 927
||||||||||||||||||
Sbjct 842 CAAACCAAACCCCATTTT 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5