BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45070.1
Length=458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483640 jgi|Araly1|483640|fgenesh2_kg.4__2700__AT2G45070.4 667 0.0
Ahg939095 jgi|Araly1|939095|scaffold_503286.1 222 1e-57
> Ahg483640 jgi|Araly1|483640|fgenesh2_kg.4__2700__AT2G45070.4
Length=489
Score = 667 bits (361), Expect = 0.0
Identities = 421/449 (94%), Gaps = 7/449 (2%)
Strand=Plus/Plus
Query 1 GAAAGTCTTCAAATCTCTCCGTCACGAATCGTTCTCTCGTCGTCATCAAAATCTGTTAGC 60
|||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| |||
Sbjct 43 GAAAGTCTTCAAATCTCTCCGTCACGAATCGTTCCCTCGTCGTCATCAGAATTTGTAAGC 102
Query 61 CGAATC----AGAGAAAAGAAGAAAGAATGGTGGGAAGTGGAGCTCCACAGAGAGGAAGT 116
|||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 103 CGAATCAGGTAGAGAAAACAAGAAAGAATGGTGGGTAGTGGAGCTCCACAGAGAGGAAGT 162
Query 117 GCAGCTGCAACTGCAAGCATGCGTAGGAGGAAGCCGACCAGCGGTGCTGGTGGAGGAGGT 176
|||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 163 GCAGCTGCAACTGCAAGCATGCGTAGGAGGAAGCCGGCAAGTGGTGCTGGTGGAGGAGGA 222
Query 177 GCCTCTGGTGGTGCAGCCGGATCCATGCTTCAGTTCTACACCGATGACGCACCTGGTCTC 236
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 223 GCCTCTGGTGGTGCAGCTGGATCCATGCTTCAGTTCTACACCGATGACGCACCCGGTCTT 282
Query 237 AAGATCTCCCCCAATGTTGTTCTTATCATGAGCATCGGTTTCATTGCTTTCGTCGCTGTG 296
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 283 AAGATCTCCCCCAATGTTGTCCTTATCATGAGCATCGGTTTCATTGCTTTCGTCGCGGTT 342
Query 297 CTTCATGTTATGGGCAAGCTCTACTTTGTCAAATGATGACAAAGATAATAGTTGAAGACA 356
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 343 CTTCATGTTATGGGCAAGCTCTACTTTGTCAAGTGATGAGAAAGATAATAGTTGAAGACA 402
Query 357 AT-GCCACCCTAAGTGACTGCTAGTGATCCAAATATTATACAGTGGTTTCAAGTTAATGT 415
| |||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 403 -TCGCCACCCTAAGTGACTGCTAGTGATCAAAATATTAGACAGTGGTTTCA-GTTAATGT 460
Query 416 TTTAATTTTGTGGTTTATTACCAGAGTAT 444
|||||||||||||||||||||| ||||||
Sbjct 461 TTTAATTTTGTGGTTTATTACCTGAGTAT 489
> Ahg939095 jgi|Araly1|939095|scaffold_503286.1
Length=283
Score = 222 bits (120), Expect = 1e-57
Identities = 213/255 (84%), Gaps = 17/255 (7%)
Strand=Plus/Plus
Query 75 GAAGAAAGAATGGTGGGAAGTGGAGCTCCACAGAGAGGAAGTGCAGCTGCAACTGCAAGC 134
||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 14 GAAGAAAAAATGGTTGGAGGTGGAGCTCCACAGAGAGGAAGTGCAGCTGCAACTGCAAGT 73
Query 135 ATGCGTAGGAGGAAGCCGACCAGCGGTGCTGGTGGAGGAGGTGCCTCTGGTGGTGCAGCC 194
||| | | |||| | || ||| ||||||| || |||| |||||| |||||
Sbjct 74 ATGAG-A--AGGA-G--GA--AGC----CTGGTGGT--AG-TGCCGGTGGTGGAGCAGCT 118
Query 195 GGATCCATGCTTCAGTTCTACACCGATGACGCACCTGGTCTCAAGATCTCCCCCAATGTT 254
||| | ||||||||||||||||| || ||||| |||||||||||||| || || ||||||
Sbjct 119 GGAACAATGCTTCAGTTCTACACAGACGACGCGCCTGGTCTCAAGATTTCTCCAAATGTT 178
Query 255 GTTCTTATCATGAGCATCGGTTTCATTGC-TTTCGTCGCTGTGCTTCATGTTATGGGCAA 313
|||||||||||||| || ||||||||||| ||| || ||||| |||||||| ||||| ||
Sbjct 179 GTTCTTATCATGAGTATTGGTTTCATTGCCTTT-GTTGCTGTTCTTCATGTCATGGGTAA 237
Query 314 GCTCTACTTTGTCAA 328
|||||| ||||||||
Sbjct 238 GCTCTATTTTGTCAA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16559525626
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5