BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45080.1
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483641 jgi|Araly1|483641|fgenesh2_kg.4__2701__AT2G45080.1 1144 0.0
Ahg486531 jgi|Araly1|486531|fgenesh2_kg.5__2523__AT3G60550.1 549 9e-156
> Ahg483641 jgi|Araly1|483641|fgenesh2_kg.4__2701__AT2G45080.1
Length=691
Score = 1144 bits (619), Expect = 0.0
Identities = 668/692 (97%), Gaps = 2/692 (0%)
Strand=Plus/Plus
Query 3 CCCATAAAGTTTCTCCGATCAATGGATTCCCTAGCGATTTCTCCAAGGAAGCTCCGATCA 62
||||| |||||||||||||||||| |||| |||||||||||||| |||||||||||||||
Sbjct 1 CCCATTAAGTTTCTCCGATCAATGTATTCTCTAGCGATTTCTCCGAGGAAGCTCCGATCA 60
Query 63 GACCTCTACTCTTACTCTTACCAAGATGATTCCAACACAGTACCTCTAGTCATCTCTGTT 122
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 GACCTCTACTCATACTCTTACCAAGATGACTCCAACACAGTACCTCTAGTCATCTCTGTA 120
Query 123 CTCTCGTCTCTGATCGAACGAACTTTAGCTAGGAACGAGAGAATCAGCCGGAGCTACGGT 182
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CTCTCGTCTCTGATCGAACGGACTTTGGCTAGGAACGAGAGAATCAGCCGGAGCTACGGT 180
Query 183 GGTTTTGGTAAGACACGTGTCTTTGATTGCCGGGAGATTCCTGATATGACTATTCAATCA 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTTTTGGTAAGACACGTGTCTTTGATTGCCGGGAGATTCCTGATATGACTATTCAATCA 240
Query 243 TACCTAGAGAGAATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTACGTCGTGGCTTAT 302
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 241 TACCTAGAGAGGATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTACGTCGTTGCCTAT 300
Query 303 GTATACATTGACCGGTTCTGTCAGAATAACCAAGGTTTCAGAATCAGTCTT-ACCAATGT 361
||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 301 GTATACATTGATCGGTTCTGTCAGAATAACCAAGGTTTCAGAATCAGT-TTAACCAATGT 359
Query 362 ACATCGTCTCCTTATCACAACTATCATGATCGCTTCCAAATACGTCGAAGATATGAACTA 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ACATCGTCTCCTTATCACAACTATCATGATCGCTTCCAAATACGTCGAAGATATGAACTA 419
Query 422 CAAAAACTCGTACTTTGCGAAAGTAGGAGGATTAGAGACAGAAGATTTGAACAATTTGGA 481
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAGAAACTCGTACTTTGCGAAAGTAGGAGGATTAGAGACAGAAGATTTGAACAATTTGGA 479
Query 482 ACTGGAGTTCTTGTTCTTGATGGGATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACTGGAGTTCTTGTTCTTGATGGGATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAG 539
Query 542 TTACTGTTGTCATCTAGAAAGAGAAGTGAGTATTGGAGGAGGTTATCAGATCGAAAAAGC 601
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 540 TTACTGTTGTCATCTTGAAAGAGAAGTTAGTATCGGAGGAGGTTATCAGATCGAAAAGGC 599
Query 602 ATTGCGTTGCGCTGAGGAAATCAAATCTAGACAAATTGTTCAAGACCCTAAACATCATCA 661
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 ATTACGTTGCGCTGAGGAAATCAAATCTAGACAAATTGTTCAAGATCCTAAACATCATCA 659
Query 662 TCACCATCAATTTTCTCGAATCATGTTGTAGT 693
|||||||||||||||||||||| |||||||||
Sbjct 660 TCACCATCAATTTTCTCGAATCTTGTTGTAGT 691
> Ahg486531 jgi|Araly1|486531|fgenesh2_kg.5__2523__AT3G60550.1
Length=707
Score = 549 bits (297), Expect = 9e-156
Identities = 552/671 (82%), Gaps = 34/671 (5%)
Strand=Plus/Plus
Query 42 TCTCCAAGGAAGCTCCGATCAGACCTCTACTCTTACTCTTACCAAGATGATTCCAACACA 101
||||| ||||| ||||| || || |||||||| ||||| |||||| | ||||| | ||
Sbjct 51 TCTCCGAGGAAACTCCGGTCTGATCTCTACTCATACTCATACCAAAACAATTCCGAGAC- 109
Query 102 GTACCTCTAGTCATCTCTGTTCTCTCGTCTCTGATCGAACGAACT-TTAGCTAGGAACGA 160
|||||| || ||||||||| | ||||| |||||||| |||||| | | || | |||||
Sbjct 110 --ACCTCTGGTTATCTCTGTTTTATCGTCACTGATCGATCGAACTCTGA-CTCGAAACGA 166
Query 161 GAGAATCAGCC-G-GA-----G-----CTACGGTGGTTTTGGTAAGACACGTG-TCTTTG 207
||| || |||| | || | || ||||| ||| || || | | ||||||
Sbjct 167 GAGGATTAGCCGGAGAGCTTTGCCTTCCTCCGGTGCCGGTGGCAAAACTC-AGATCTTTG 225
Query 208 ATTGCCGGGAGATTCCTGATATGACTATTCAATCATACCTAGAGAGAATTTTCCGGTATA 267
||||||| || || ||||||||||| || ||||| ||||||||||||||||||||||| |
Sbjct 226 ATTGCCGTGAAATCCCTGATATGACAATCCAATCGTACCTAGAGAGAATTTTCCGGTACA 285
Query 268 CCAAAGCCGGTCCATCGGTTTACGTCGTGGCTTATGTATACATTGACCGGTTCTGTCAGA 327
| ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| |
Sbjct 286 CTAAAGCCGGTCCTTCGGTTTACGTGGTAGCTTATGTCTACATTGACCGGTTCTGTCA-A 344
Query 328 A-TAA-CCAAGGTTTCAGAATCAGTCTTACCAATGTACATCGTCTCCTTATCACAACTAT 385
| || || | |||| ||||||||||| |||||||||||||||||||| ||||| || ||
Sbjct 345 ACCAATCCTA-GTTTTAGAATCAGTCTCACCAATGTACATCGTCTCCTCATCACCACCAT 403
Query 386 CATGATCGCTTCCAAATACGTCGAAGATATGAACTACAAAAACTCGTACTTTGCGAAAGT 445
|||||||||||| ||||||||| ||||| |||| |||| || || || |||||||||||
Sbjct 404 CATGATCGCTTCTAAATACGTCAAAGATTTGAATTACAGGAATTCATATTTTGCGAAAGT 463
Query 446 AGGAGGATTAGAGACAGAAGATTTGAACAATTTGGAACTGGAG-TTCTTGTTCTTGATGG 504
||| |||||||||||||| |||||||| || || || | ||| ||| ||||||||||||
Sbjct 464 AGGTGGATTAGAGACAGAGGATTTGAATAAGTTAGAGTTAGAGTTTC-TGTTCTTGATGG 522
Query 505 GATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAGTTACTGTTGTCATCTAGAAAGAG 564
|||| ||| | ||||| ||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 523 GATTCAAGCTACATGTTAATGTGACTGTGTTCGAGAGTTATTGTTGTCATCTTGAAAGAG 582
Query 565 AAGTGAGTATTGGAGGAGGTTATCAGATCGAAAAAGCATTGCGTTGCGCTGAGGAAATCA 624
| || || ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 583 AGGTTAGCATTGGAGGAGGTTATCAAATCGAAAAGGCATTGCGTTGCGCTGAGGAAATCA 642
Query 625 AATCTAGACAAAT--T-GTTCAAGACCCTAAACATCATCATCACCATCAATTTTCTCGAA 681
|||| | |||||| | |||||||| ||||||||||||||||| | ||| ||||||
Sbjct 643 AATCCAAACAAATGATCGTTCAAGATCCTAAACATCATCATCA---T---TTTGCTCGAA 696
Query 682 TCATGTTGTAG 692
|| ||||||||
Sbjct 697 TCTTGTTGTAG 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25885460643
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5