BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45080.1 Length=704 Score E Sequences producing significant alignments: (Bits) Value Ahg483641 jgi|Araly1|483641|fgenesh2_kg.4__2701__AT2G45080.1 1144 0.0 Ahg486531 jgi|Araly1|486531|fgenesh2_kg.5__2523__AT3G60550.1 549 9e-156 > Ahg483641 jgi|Araly1|483641|fgenesh2_kg.4__2701__AT2G45080.1 Length=691 Score = 1144 bits (619), Expect = 0.0 Identities = 668/692 (97%), Gaps = 2/692 (0%) Strand=Plus/Plus Query 3 CCCATAAAGTTTCTCCGATCAATGGATTCCCTAGCGATTTCTCCAAGGAAGCTCCGATCA 62 ||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||||| Sbjct 1 CCCATTAAGTTTCTCCGATCAATGTATTCTCTAGCGATTTCTCCGAGGAAGCTCCGATCA 60 Query 63 GACCTCTACTCTTACTCTTACCAAGATGATTCCAACACAGTACCTCTAGTCATCTCTGTT 122 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 GACCTCTACTCATACTCTTACCAAGATGACTCCAACACAGTACCTCTAGTCATCTCTGTA 120 Query 123 CTCTCGTCTCTGATCGAACGAACTTTAGCTAGGAACGAGAGAATCAGCCGGAGCTACGGT 182 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 121 CTCTCGTCTCTGATCGAACGGACTTTGGCTAGGAACGAGAGAATCAGCCGGAGCTACGGT 180 Query 183 GGTTTTGGTAAGACACGTGTCTTTGATTGCCGGGAGATTCCTGATATGACTATTCAATCA 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGTTTTGGTAAGACACGTGTCTTTGATTGCCGGGAGATTCCTGATATGACTATTCAATCA 240 Query 243 TACCTAGAGAGAATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTACGTCGTGGCTTAT 302 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 241 TACCTAGAGAGGATTTTCCGGTATACCAAAGCCGGTCCATCGGTTTACGTCGTTGCCTAT 300 Query 303 GTATACATTGACCGGTTCTGTCAGAATAACCAAGGTTTCAGAATCAGTCTT-ACCAATGT 361 ||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 301 GTATACATTGATCGGTTCTGTCAGAATAACCAAGGTTTCAGAATCAGT-TTAACCAATGT 359 Query 362 ACATCGTCTCCTTATCACAACTATCATGATCGCTTCCAAATACGTCGAAGATATGAACTA 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 ACATCGTCTCCTTATCACAACTATCATGATCGCTTCCAAATACGTCGAAGATATGAACTA 419 Query 422 CAAAAACTCGTACTTTGCGAAAGTAGGAGGATTAGAGACAGAAGATTTGAACAATTTGGA 481 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 TAGAAACTCGTACTTTGCGAAAGTAGGAGGATTAGAGACAGAAGATTTGAACAATTTGGA 479 Query 482 ACTGGAGTTCTTGTTCTTGATGGGATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAG 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ACTGGAGTTCTTGTTCTTGATGGGATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAG 539 Query 542 TTACTGTTGTCATCTAGAAAGAGAAGTGAGTATTGGAGGAGGTTATCAGATCGAAAAAGC 601 ||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || Sbjct 540 TTACTGTTGTCATCTTGAAAGAGAAGTTAGTATCGGAGGAGGTTATCAGATCGAAAAGGC 599 Query 602 ATTGCGTTGCGCTGAGGAAATCAAATCTAGACAAATTGTTCAAGACCCTAAACATCATCA 661 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 600 ATTACGTTGCGCTGAGGAAATCAAATCTAGACAAATTGTTCAAGATCCTAAACATCATCA 659 Query 662 TCACCATCAATTTTCTCGAATCATGTTGTAGT 693 |||||||||||||||||||||| ||||||||| Sbjct 660 TCACCATCAATTTTCTCGAATCTTGTTGTAGT 691 > Ahg486531 jgi|Araly1|486531|fgenesh2_kg.5__2523__AT3G60550.1 Length=707 Score = 549 bits (297), Expect = 9e-156 Identities = 552/671 (82%), Gaps = 34/671 (5%) Strand=Plus/Plus Query 42 TCTCCAAGGAAGCTCCGATCAGACCTCTACTCTTACTCTTACCAAGATGATTCCAACACA 101 ||||| ||||| ||||| || || |||||||| ||||| |||||| | ||||| | || Sbjct 51 TCTCCGAGGAAACTCCGGTCTGATCTCTACTCATACTCATACCAAAACAATTCCGAGAC- 109 Query 102 GTACCTCTAGTCATCTCTGTTCTCTCGTCTCTGATCGAACGAACT-TTAGCTAGGAACGA 160 |||||| || ||||||||| | ||||| |||||||| |||||| | | || | ||||| Sbjct 110 --ACCTCTGGTTATCTCTGTTTTATCGTCACTGATCGATCGAACTCTGA-CTCGAAACGA 166 Query 161 GAGAATCAGCC-G-GA-----G-----CTACGGTGGTTTTGGTAAGACACGTG-TCTTTG 207 ||| || |||| | || | || ||||| ||| || || | | |||||| Sbjct 167 GAGGATTAGCCGGAGAGCTTTGCCTTCCTCCGGTGCCGGTGGCAAAACTC-AGATCTTTG 225 Query 208 ATTGCCGGGAGATTCCTGATATGACTATTCAATCATACCTAGAGAGAATTTTCCGGTATA 267 ||||||| || || ||||||||||| || ||||| ||||||||||||||||||||||| | Sbjct 226 ATTGCCGTGAAATCCCTGATATGACAATCCAATCGTACCTAGAGAGAATTTTCCGGTACA 285 Query 268 CCAAAGCCGGTCCATCGGTTTACGTCGTGGCTTATGTATACATTGACCGGTTCTGTCAGA 327 | ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| | Sbjct 286 CTAAAGCCGGTCCTTCGGTTTACGTGGTAGCTTATGTCTACATTGACCGGTTCTGTCA-A 344 Query 328 A-TAA-CCAAGGTTTCAGAATCAGTCTTACCAATGTACATCGTCTCCTTATCACAACTAT 385 | || || | |||| ||||||||||| |||||||||||||||||||| ||||| || || Sbjct 345 ACCAATCCTA-GTTTTAGAATCAGTCTCACCAATGTACATCGTCTCCTCATCACCACCAT 403 Query 386 CATGATCGCTTCCAAATACGTCGAAGATATGAACTACAAAAACTCGTACTTTGCGAAAGT 445 |||||||||||| ||||||||| ||||| |||| |||| || || || ||||||||||| Sbjct 404 CATGATCGCTTCTAAATACGTCAAAGATTTGAATTACAGGAATTCATATTTTGCGAAAGT 463 Query 446 AGGAGGATTAGAGACAGAAGATTTGAACAATTTGGAACTGGAG-TTCTTGTTCTTGATGG 504 ||| |||||||||||||| |||||||| || || || | ||| ||| |||||||||||| Sbjct 464 AGGTGGATTAGAGACAGAGGATTTGAATAAGTTAGAGTTAGAGTTTC-TGTTCTTGATGG 522 Query 505 GATTTAAGTTGCATGTGAATGTGAGTGTGTTCGAGAGTTACTGTTGTCATCTAGAAAGAG 564 |||| ||| | ||||| ||||||| ||||||||||||||| ||||||||||| ||||||| Sbjct 523 GATTCAAGCTACATGTTAATGTGACTGTGTTCGAGAGTTATTGTTGTCATCTTGAAAGAG 582 Query 565 AAGTGAGTATTGGAGGAGGTTATCAGATCGAAAAAGCATTGCGTTGCGCTGAGGAAATCA 624 | || || ||||||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 583 AGGTTAGCATTGGAGGAGGTTATCAAATCGAAAAGGCATTGCGTTGCGCTGAGGAAATCA 642 Query 625 AATCTAGACAAAT--T-GTTCAAGACCCTAAACATCATCATCACCATCAATTTTCTCGAA 681 |||| | |||||| | |||||||| ||||||||||||||||| | ||| |||||| Sbjct 643 AATCCAAACAAATGATCGTTCAAGATCCTAAACATCATCATCA---T---TTTGCTCGAA 696 Query 682 TCATGTTGTAG 692 || |||||||| Sbjct 697 TCTTGTTGTAG 707 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25885460643 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5