BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45120.1
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483645 jgi|Araly1|483645|fgenesh2_kg.4__2705__AT2G45120.1 1256 0.0
Ahg939100 jgi|Araly1|939100|scaffold_503291.1 244 8e-64
> Ahg483645 jgi|Araly1|483645|fgenesh2_kg.4__2705__AT2G45120.1
Length=1116
Score = 1256 bits (680), Expect = 0.0
Identities = 939/1051 (89%), Gaps = 69/1051 (7%)
Strand=Plus/Plus
Query 1 GTttctctactctttcttcttctctctctatctctgttctGTAATTTTTGTCGTGTTGAA 60
||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 1 GTTTCTCTACTCTTTGTTCTTCTCTCTCTATCTCTGTTCTGTAA--------AT-TT--- 48
Query 61 AAATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGCTTTAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 49 --ATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGCTTTAG 106
Query 121 GTGGTCACATGAGATCTCACATGCTTACTCTTTCTGCAGAACGTTG---TGTAAT-AACT 176
|||||||||||| |||||||||||||| |||||||||| ||||| | | || | || |
Sbjct 107 GTGGTCACATGAAATCTCACATGCTTAGTCTTTCTGCAAAACGT-GAACTTTA-TGAA-T 163
Query 177 GGTGAAGCAGAAGAAGAAGTAGAGGAACGGCCGAGTCAACTCTGTGACGACGACGACGAT 236
| || | | ||||||| ||||||||| |||||||||||| ||||||||||||| |
Sbjct 164 --T-AA-CTGGTGAAGAAGCAGAGGAACGCCCGAGTCAACTCAGTGACGACGACGA---T 216
Query 237 ACCGAGTCCGATGCTTCTTCTTCT--T------C----T-----G----GTG---AGTTT 272
|| ||||| ||||||||||||||| | | | | ||| |||||
Sbjct 217 ACAGAGTCAGATGCTTCTTCTTCTGGTGAGGAACAAGATCATTTGAATTGTGGTGAGTTT 276
Query 273 GATAATCAAAAGATGAATCGTCTTGATGATGAATTGGAGTTTGATTTCGCTGAAGACGAC 332
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GATAATCTAAAGATGAAACTTCTTGATGATGAATTGGAGTTTGATTTCGCTGAAGACGAC 336
Query 333 GACG---TTGAAAGTGAAACCGAGTCGTCCAGGATTAACCCAACTCGGCGACGATCTAAA 389
|||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 337 GACGACGTTGAAAGTGAAACCGAGTCGTCGAGGATTAACCCAACTCGCCGACGATCTAAG 396
Query 390 CGAACTCGGAAACTTGGATCGTTTGATTTCGACTTTGAGAAGCTAACAACGAGCCAACCC 449
||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||
Sbjct 397 CGAACTCGGAAACTTGGATCGTTCGATTTCGACTTTAAGAAGCTAAAAACGAGCCAACCC 456
Query 450 AGTGAGTTAGTGGCCGAGCCAGAGCATCACAGCTCAGCTTCTGATACAACAACGGAGGAA 509
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AGTGAGTTAGTGACGGAGCCAGAGCATCACAGCTCAGCTTCTGATACAACAACGGAGGAA 516
Query 510 GATCTCGCCTTTTGTCTCATTATGCTGTCCAGAGACAAATGGAAGCAACAGAAGAAGAAG 569
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 517 GATCTCGCCTTTTGTCTCATTATGCTCTCAAGAGACAAATGGAAGCAACAGAAGAAGAAG 576
Query 570 AAGCAACGTGTAGAAGAAGA---TGAGACAGATCATGACAGTGAAGATTACAAATCA-AG 625
|||||||||||||||||||| |||||||||||||||||| ||||||| ||| | |
Sbjct 577 AAGCAACGTGTAGAAGAAGAAGATGAGACAGATCATGACAGCGAAGATTGCAAGCCGGA- 635
Query 626 CAAGAGCAGAGGGAGATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGC 685
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 CAAGAACAGAGGTAGATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGC 695
Query 686 ATTAGGAGGACACAGAGCAAGCCACAAGAAGAACAAGGCATGCATGACGAAAACAGAGCA 745
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 696 ATTAGGAGGACACAGAGCAAGTCACAAGAAGAACAAGGCATGCATGACGAAAACAGAGCA 755
Query 746 AGTTGAAACAGAGTACGTTCTTGGAGTAAAGGAGAAGAAAGTTCATGAATGTCCGATCTG 805
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 756 AGTTAAAACAGAGTACGTTCTTGGAGCCAAGGAGAAGAAAGTTCATGAATGTCCGATTTG 815
Query 806 TTTTAGGGTTTTTACTTCAGGGCAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAA 865
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 816 TTTTAGGGTTTTTACTTCAGGACAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAA 875
Query 866 CATCGGAGCAGGAAGAGGATTGTCAGTAAGTCAAATTGTCCAAATCGA-A-G-AAGAAGT 922
|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 876 CATCGGAGCAGGAAGAGGATTGTCAGTAAGTCAAATTGTCCAAATCGACAAGGAAGAAGA 935
Query 923 A------TCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACCTAATGAAGAAGA 976
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 936 AGAAGAATCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACTTAATGAAGAAGA 995
Query 977 TGAAACTTCTTTGGTGTTTGATGAATGGTGA 1007
|||||||||||||||||| ||||||||||||
Sbjct 996 TGAAACTTCTTTGGTGTTCGATGAATGGTGA 1026
Score = 110 bits (59), Expect = 3e-23
Identities = 70/75 (93%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 1062 TTTG-TTTTTTGGGGTTTGAT-TACTTTTATGTTAATGCAAAGGAGGCTACTTTTACATG 1119
|||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1042 TTTGTTTTTTTGGGGTTTGGTCAAATTTTATGTTAATGCAAAGGAGGCTACTTTTACATG 1101
Query 1120 TTCTAACGCCAAGTT 1134
|||||||||||||||
Sbjct 1102 TTCTAACGCCAAGTT 1116
> Ahg939100 jgi|Araly1|939100|scaffold_503291.1
Length=940
Score = 244 bits (132), Expect = 8e-64
Identities = 445/583 (76%), Gaps = 74/583 (13%)
Strand=Plus/Plus
Query 476 TCACAGCTCAGCTTCTGATACAACAACGGAGGAAGATCTCGCCTTTTGTCTCATTATGCT 535
||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct 395 TCATAGCTCAGCTTCTGATACAACGACGGAAGAAGATCTAGCCTTTTGTCTCATGATGCT 454
Query 536 GTCCAGAGACAAATGGAAGCAA-CAGAAGAAG-AA-GAAGCAACGT-GTAGAAGAAGAT- 590
|| ||||| ||||||||| || | || ||| || ||| || || ||||||| ||||
Sbjct 455 CTCGAGAGATAAATGGAAG-AAGAACAA-AAGTAATAAAG-AA-GTAGTAGAAG-AGATC 509
Query 591 GAGACAGATCATG-A-CAGTGAAGATT---ACAA-ATCAAGC-AAGAGC-A-G--AGGGA 639
|||||||| | | | || |||| || |||| || || | || | | | | |||||
Sbjct 510 GAGACAGAAGAAGAATCA--GAAGGTTACAACAAGATTAATCGAATAACAACGAAAGGGA 567
Query 640 GATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGCATTAGGAGGACACA 699
||| |||||||||||||||||| |||||||| ||||| |||||||||||||| || || |
Sbjct 568 GATACAAGTGTGAGACTTGTGGGAAAGTGTTCAAATCTTATCAAGCATTAGGTGGGCATA 627
Query 700 GAGCAAGCCACAAGAAGAACAAG-GCATGCATGACGAAAACAGAGCAA-G--TTGAAACA 755
||||||| || ||||||||| || | | | | || |||||||||||| | ||||||
Sbjct 628 GAGCAAGTCATAAGAAGAAC-AGAGTAAG--TAAC-AAAACAGAGCAACGAAGCGAAACA 683
Query 756 GAGTACG-T--TCTTG--G-AGTAAAGGAGAAGA-AAGTTCATGAATGTCCGATCTGTTT 808
||||| | | | ||| | || ||||||| || | |||||||||||||| ||| |
Sbjct 684 GAGTATGATAATGTTGTTGTTGTTGCTGAGAAGAGAA-TCCATGAATGTCCGATATGTCT 742
Query 809 TAGGGTTTTTACTTCAGGG-CAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAACA 867
||| |||||| | || ||| |||||||||||||||||||||||||||||||| | |
Sbjct 743 TAGAGTTTTTGCATC-GGGACAAGCACTTGGAGGTCATAAGAGATCTCACGGGA-T---- 796
Query 868 TCGGAGCAGGAAGAGGATTGTCAGT-AAGTCAA-ATTGTCCAAAT-CGA-AGAAGAAGTA 923
| || | | | ||||| || || ||| || || || | | | |||| | | |
Sbjct 797 T-GG-G-A--AT-----TTGTCTGTGAA-TCAGCATCATC-AAGTTC-ATAGAA-ACG-A 841
Query 924 -TCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACCTAAT-GAAGAAGATGAAA 981
|| ||||||||||||||||| |||||||||||||||||||| || |||||||| ||
Sbjct 842 GTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACC-AACCGAAGAAGACGATG 900
Query 982 -CTTCTTTGGTGTTTGA-TGAATGGTGAAAACGAAAGGTAACA 1022
|| || |||||||| | |||||| |||| | || |||||||
Sbjct 901 TCT-CTGTGGTGTTTCAATGAATGCTGAATA--AA-GGTAACA 939
Score = 113 bits (61), Expect = 2e-24
Identities = 80/89 (90%), Gaps = 1/89 (1%)
Strand=Plus/Plus
Query 56 TTGAAAAATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGC 115
||| || |||||||| |||||||| || ||||||| ||||||||| | |||||||||||
Sbjct 15 TTG-AAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCGTTAATGGAAGAGC 73
Query 116 TTTAGGTGGTCACATGAGATCTCACATGC 144
|||||||||||||||||||||||||||||
Sbjct 74 TTTAGGTGGTCACATGAGATCTCACATGC 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42278314953
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5