BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45120.1 Length=1134 Score E Sequences producing significant alignments: (Bits) Value Ahg483645 jgi|Araly1|483645|fgenesh2_kg.4__2705__AT2G45120.1 1256 0.0 Ahg939100 jgi|Araly1|939100|scaffold_503291.1 244 8e-64 > Ahg483645 jgi|Araly1|483645|fgenesh2_kg.4__2705__AT2G45120.1 Length=1116 Score = 1256 bits (680), Expect = 0.0 Identities = 939/1051 (89%), Gaps = 69/1051 (7%) Strand=Plus/Plus Query 1 GTttctctactctttcttcttctctctctatctctgttctGTAATTTTTGTCGTGTTGAA 60 ||||||||||||||| |||||||||||||||||||||||||||| | || Sbjct 1 GTTTCTCTACTCTTTGTTCTTCTCTCTCTATCTCTGTTCTGTAA--------AT-TT--- 48 Query 61 AAATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGCTTTAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49 --ATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGCTTTAG 106 Query 121 GTGGTCACATGAGATCTCACATGCTTACTCTTTCTGCAGAACGTTG---TGTAAT-AACT 176 |||||||||||| |||||||||||||| |||||||||| ||||| | | || | || | Sbjct 107 GTGGTCACATGAAATCTCACATGCTTAGTCTTTCTGCAAAACGT-GAACTTTA-TGAA-T 163 Query 177 GGTGAAGCAGAAGAAGAAGTAGAGGAACGGCCGAGTCAACTCTGTGACGACGACGACGAT 236 | || | | ||||||| ||||||||| |||||||||||| ||||||||||||| | Sbjct 164 --T-AA-CTGGTGAAGAAGCAGAGGAACGCCCGAGTCAACTCAGTGACGACGACGA---T 216 Query 237 ACCGAGTCCGATGCTTCTTCTTCT--T------C----T-----G----GTG---AGTTT 272 || ||||| ||||||||||||||| | | | | ||| ||||| Sbjct 217 ACAGAGTCAGATGCTTCTTCTTCTGGTGAGGAACAAGATCATTTGAATTGTGGTGAGTTT 276 Query 273 GATAATCAAAAGATGAATCGTCTTGATGATGAATTGGAGTTTGATTTCGCTGAAGACGAC 332 ||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 277 GATAATCTAAAGATGAAACTTCTTGATGATGAATTGGAGTTTGATTTCGCTGAAGACGAC 336 Query 333 GACG---TTGAAAGTGAAACCGAGTCGTCCAGGATTAACCCAACTCGGCGACGATCTAAA 389 |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 337 GACGACGTTGAAAGTGAAACCGAGTCGTCGAGGATTAACCCAACTCGCCGACGATCTAAG 396 Query 390 CGAACTCGGAAACTTGGATCGTTTGATTTCGACTTTGAGAAGCTAACAACGAGCCAACCC 449 ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| Sbjct 397 CGAACTCGGAAACTTGGATCGTTCGATTTCGACTTTAAGAAGCTAAAAACGAGCCAACCC 456 Query 450 AGTGAGTTAGTGGCCGAGCCAGAGCATCACAGCTCAGCTTCTGATACAACAACGGAGGAA 509 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 AGTGAGTTAGTGACGGAGCCAGAGCATCACAGCTCAGCTTCTGATACAACAACGGAGGAA 516 Query 510 GATCTCGCCTTTTGTCTCATTATGCTGTCCAGAGACAAATGGAAGCAACAGAAGAAGAAG 569 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 517 GATCTCGCCTTTTGTCTCATTATGCTCTCAAGAGACAAATGGAAGCAACAGAAGAAGAAG 576 Query 570 AAGCAACGTGTAGAAGAAGA---TGAGACAGATCATGACAGTGAAGATTACAAATCA-AG 625 |||||||||||||||||||| |||||||||||||||||| ||||||| ||| | | Sbjct 577 AAGCAACGTGTAGAAGAAGAAGATGAGACAGATCATGACAGCGAAGATTGCAAGCCGGA- 635 Query 626 CAAGAGCAGAGGGAGATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGC 685 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 636 CAAGAACAGAGGTAGATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGC 695 Query 686 ATTAGGAGGACACAGAGCAAGCCACAAGAAGAACAAGGCATGCATGACGAAAACAGAGCA 745 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 696 ATTAGGAGGACACAGAGCAAGTCACAAGAAGAACAAGGCATGCATGACGAAAACAGAGCA 755 Query 746 AGTTGAAACAGAGTACGTTCTTGGAGTAAAGGAGAAGAAAGTTCATGAATGTCCGATCTG 805 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 756 AGTTAAAACAGAGTACGTTCTTGGAGCCAAGGAGAAGAAAGTTCATGAATGTCCGATTTG 815 Query 806 TTTTAGGGTTTTTACTTCAGGGCAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAA 865 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 816 TTTTAGGGTTTTTACTTCAGGACAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAA 875 Query 866 CATCGGAGCAGGAAGAGGATTGTCAGTAAGTCAAATTGTCCAAATCGA-A-G-AAGAAGT 922 |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 876 CATCGGAGCAGGAAGAGGATTGTCAGTAAGTCAAATTGTCCAAATCGACAAGGAAGAAGA 935 Query 923 A------TCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACCTAATGAAGAAGA 976 | |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 936 AGAAGAATCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACTTAATGAAGAAGA 995 Query 977 TGAAACTTCTTTGGTGTTTGATGAATGGTGA 1007 |||||||||||||||||| |||||||||||| Sbjct 996 TGAAACTTCTTTGGTGTTCGATGAATGGTGA 1026 Score = 110 bits (59), Expect = 3e-23 Identities = 70/75 (93%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 1062 TTTG-TTTTTTGGGGTTTGAT-TACTTTTATGTTAATGCAAAGGAGGCTACTTTTACATG 1119 |||| |||||||||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 1042 TTTGTTTTTTTGGGGTTTGGTCAAATTTTATGTTAATGCAAAGGAGGCTACTTTTACATG 1101 Query 1120 TTCTAACGCCAAGTT 1134 ||||||||||||||| Sbjct 1102 TTCTAACGCCAAGTT 1116 > Ahg939100 jgi|Araly1|939100|scaffold_503291.1 Length=940 Score = 244 bits (132), Expect = 8e-64 Identities = 445/583 (76%), Gaps = 74/583 (13%) Strand=Plus/Plus Query 476 TCACAGCTCAGCTTCTGATACAACAACGGAGGAAGATCTCGCCTTTTGTCTCATTATGCT 535 ||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| Sbjct 395 TCATAGCTCAGCTTCTGATACAACGACGGAAGAAGATCTAGCCTTTTGTCTCATGATGCT 454 Query 536 GTCCAGAGACAAATGGAAGCAA-CAGAAGAAG-AA-GAAGCAACGT-GTAGAAGAAGAT- 590 || ||||| ||||||||| || | || ||| || ||| || || ||||||| |||| Sbjct 455 CTCGAGAGATAAATGGAAG-AAGAACAA-AAGTAATAAAG-AA-GTAGTAGAAG-AGATC 509 Query 591 GAGACAGATCATG-A-CAGTGAAGATT---ACAA-ATCAAGC-AAGAGC-A-G--AGGGA 639 |||||||| | | | || |||| || |||| || || | || | | | | ||||| Sbjct 510 GAGACAGAAGAAGAATCA--GAAGGTTACAACAAGATTAATCGAATAACAACGAAAGGGA 567 Query 640 GATTCAAGTGTGAGACTTGTGGTAAAGTGTTTAAATCGTATCAAGCATTAGGAGGACACA 699 ||| |||||||||||||||||| |||||||| ||||| |||||||||||||| || || | Sbjct 568 GATACAAGTGTGAGACTTGTGGGAAAGTGTTCAAATCTTATCAAGCATTAGGTGGGCATA 627 Query 700 GAGCAAGCCACAAGAAGAACAAG-GCATGCATGACGAAAACAGAGCAA-G--TTGAAACA 755 ||||||| || ||||||||| || | | | | || |||||||||||| | |||||| Sbjct 628 GAGCAAGTCATAAGAAGAAC-AGAGTAAG--TAAC-AAAACAGAGCAACGAAGCGAAACA 683 Query 756 GAGTACG-T--TCTTG--G-AGTAAAGGAGAAGA-AAGTTCATGAATGTCCGATCTGTTT 808 ||||| | | | ||| | || ||||||| || | |||||||||||||| ||| | Sbjct 684 GAGTATGATAATGTTGTTGTTGTTGCTGAGAAGAGAA-TCCATGAATGTCCGATATGTCT 742 Query 809 TAGGGTTTTTACTTCAGGG-CAAGCACTTGGAGGTCATAAGAGATCTCACGGAAGTAACA 867 ||| |||||| | || ||| |||||||||||||||||||||||||||||||| | | Sbjct 743 TAGAGTTTTTGCATC-GGGACAAGCACTTGGAGGTCATAAGAGATCTCACGGGA-T---- 796 Query 868 TCGGAGCAGGAAGAGGATTGTCAGT-AAGTCAA-ATTGTCCAAAT-CGA-AGAAGAAGTA 923 | || | | | ||||| || || ||| || || || | | | |||| | | | Sbjct 797 T-GG-G-A--AT-----TTGTCTGTGAA-TCAGCATCATC-AAGTTC-ATAGAA-ACG-A 841 Query 924 -TCAGTGAAACAGAGGATGATTGATCTTAATCTTCCTGCACCTAAT-GAAGAAGATGAAA 981 || ||||||||||||||||| |||||||||||||||||||| || |||||||| || Sbjct 842 GTCTGTGAAACAGAGGATGATAGATCTTAATCTTCCTGCACC-AACCGAAGAAGACGATG 900 Query 982 -CTTCTTTGGTGTTTGA-TGAATGGTGAAAACGAAAGGTAACA 1022 || || |||||||| | |||||| |||| | || ||||||| Sbjct 901 TCT-CTGTGGTGTTTCAATGAATGCTGAATA--AA-GGTAACA 939 Score = 113 bits (61), Expect = 2e-24 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 56 TTGAAAAATGGAGAGATACAAGTGTAGATTTTGCTTCAAGAGCTTCATCAATGGAAGAGC 115 ||| || |||||||| |||||||| || ||||||| ||||||||| | ||||||||||| Sbjct 15 TTG-AAGATGGAGAGTTACAAGTGCAGGGTTTGCTTTAAGAGCTTCGTTAATGGAAGAGC 73 Query 116 TTTAGGTGGTCACATGAGATCTCACATGC 144 ||||||||||||||||||||||||||||| Sbjct 74 TTTAGGTGGTCACATGAGATCTCACATGC 102 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42278314953 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5