BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45130.1
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483646 jgi|Araly1|483646|fgenesh2_kg.4__2706__AT2G45130.1 992 0.0
> Ahg483646 jgi|Araly1|483646|fgenesh2_kg.4__2706__AT2G45130.1
Length=725
Score = 992 bits (537), Expect = 0.0
Identities = 648/702 (92%), Gaps = 5/702 (1%)
Strand=Plus/Plus
Query 69 TTTATATTTTGATGAAGTTTGGAAAGAGGATTAAAGAACAGATACAAGAGTCGTTGCCGG 128
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTATATTTTGATGAAGTTCGGGAAGAGGATTAAAGAACAGATACAAGAGTCGTTGCCGG 60
Query 129 AGTGGCGAGACAAGTTTCTTCGTTACAAGGAACTCAAGAATCTGATCTCTTCTCCGGCGC 188
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTGGCGAGACAAGTTTCTCCGGTACAAGGAACTCAAGAATCTGATCTCTTCTCCGGCGC 120
Query 189 CGGTGGAATCTATTTTCGTCGGTTTGTTGAACGCAGAGATCGACAAGTTTAATGCTTTCT 248
||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 121 CGGCAGAATCTATTTTCGTTGGTTTGTTGAACACAGAGATTGACAAGTTTAATGCTTTCT 180
Query 249 TCGTCGAACAAGAAGAAGATTTCATCATCCACCACAAGGAGTTGCAATATCGGATTCAGA 308
| || ||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 181 TTGTGGAACAAGAAGAAGATTTCATCATCCACCACAAGGAATTGCAATCTCGAATTCAGA 240
Query 309 GATTGGTAGAGAAATGTGGACACAATGATGAAATGTCTAGAGAGAATATTAGTGAGATCA 368
|||| |||| |||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 241 GATTAGTAGGGAAATGTGGACACAATGATGAAATGTTTAGAGAGGAGATTAGTGAGATCA 300
Query 369 GAAAAGATATTGTCAATTTCCATGGCGAAATGGTTCTGCTAGTAAACTACAGTAACATCA 428
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 301 GAAAAGATATTGTCAATTTCCACGGCGAAATGGTTCTTCTAGTAAATTACAGTAACATCA 360
Query 429 ATTACACTGGATTAGCAAAGATTCTAAAGAAGTACGACAAGCGAACAAGAGGAGGATTAA 488
|||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||
Sbjct 361 ATTATACTGGATTAGCAAAGATTTTAAAGAAGTACGACAAGAGAACAGGAGGAGGTTTAA 420
Query 489 GATCACCATTTATTCAAAAAGTTCTTCATCAACCGTTTTTCAAGACTGATCTTGTTTCAA 548
|||| || ||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 GATCGCCGTTTATACAGAAAGTTCTTCATCAACCATTTTTCAAGACTGATCTTGTTTCAA 480
Query 549 GACTAGTAAGAGAGTGGGAGACGACGATGGACGCGGTGGATCCAGTGAAGGTGGCGGAGG 608
||||||| ||||||||||||||||| |||||||||||| ||| |||| | | |||||
Sbjct 481 GACTAGTGAGAGAGTGGGAGACGACAATGGACGCGGTGTTTCCGGTGACCATAGTGGAGG 540
Query 609 CGGAGGGATACG-AGAGATGTGCGGCGGTGACTTCGGCAGCGGCGGGAGAAGGGATATTT 667
|||||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 CGGAGG----CGGAGAGATGTGCGGCGGTGACTTCCGCAGCGGCGGGAGAAGGGATATTT 596
Query 668 AGGAATACGGTTGCGGCATTATTGACTATGAAAGAGATGAGAAGAGGAAGTTCGACTTAC 727
|||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 597 AGGAATACCGTTGCGGCATTGTTGACAATGAAAGAGATGAGAAGAGGAAGTTCGACTTAT 656
Query 728 AGTGCATTCTCACTTCCGCCGCTAAATATCTCCGATTCCGAT 769
|||||||||||||| || ||||||||||||||||||||||||
Sbjct 657 AGTGCATTCTCACTACCACCGCTAAATATCTCCGATTCCGAT 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33967519047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5