BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G45135.1

Length=816
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935464 jgi|Araly1|935464|scaffold_403452.1                        220    1e-56


> Ahg935464 jgi|Araly1|935464|scaffold_403452.1
Length=302

 Score =  220 bits (119),  Expect = 1e-56
 Identities = 157/174 (90%), Gaps = 7/174 (4%)
 Strand=Plus/Plus

Query  241  CAGAAAGATA-CCTATTATTGCTATTGAATGCCGTAGATGCTTATCAGTCTCTTCTCCGG  299
            ||| |||| | ||| ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct  82   CAG-AAGA-AGCCTCTTATTGCTATTCAATGCCGTAGATGCTTATCAGACTCTTCTCCGG  139

Query  300  TAGTTATTGCCGACCCTTGC-ATGCACAGATTCTGCGTGAAATGTATCTTATTCCTCTGG  358
            ||||||| | | |||||||| |  ||||||||||||||||||||||||||||||||||||
Sbjct  140  TAGTTATCGTCAACCCTTGCGA-CCACAGATTCTGCGTGAAATGTATCTTATTCCTCTGG  198

Query  359  GGACGCCAGAAAC-GTAGAGAACCTTGTGTATGCCCCCTTGATGGAGAAAAGAT  411
            | ||||||||||| | |||||||||||||| || ||||||||||||||||||||
Sbjct  199  GCACGCCAGAAACAG-AGAGAACCTTGTGTGTGTCCCCTTGATGGAGAAAAGAT  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30155227347


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5