BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45140.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483647 jgi|Araly1|483647|fgenesh2_kg.4__2707__AT2G45140.1 1794 0.0
Ahg486536 jgi|Araly1|486536|fgenesh2_kg.5__2528__AT3G60600.2 490 1e-137
Ahg899705 jgi|Araly1|899705|Al_scaffold_0004_355 237 2e-61
Ahg899704 jgi|Araly1|899704|Al_scaffold_0004_354 230 3e-59
Ahg899703 jgi|Araly1|899703|Al_scaffold_0004_353 230 3e-59
Ahg932384 jgi|Araly1|932384|scaffold_400372.1 143 3e-33
> Ahg483647 jgi|Araly1|483647|fgenesh2_kg.4__2707__AT2G45140.1
Length=1204
Score = 1794 bits (971), Expect = 0.0
Identities = 1118/1186 (94%), Gaps = 21/1186 (2%)
Strand=Plus/Plus
Query 1 AATAACAAGAAGTGAGTCTCCGGTCTGAAACTAATTAAGGAGACGGCAAGAGAAACAAGA 60
|||||||| ||||||||||||||||| ||| ||||||| | | | |||||||||||
Sbjct 1 AATAACAATAAGTGAGTCTCCGGTCT-AAATTAATTAATTA-A--G---GAGAAACAAGA 53
Query 61 CATACGTTTGCTGTCCCACGTTGATCTTGTTGTTTActctctctctctcCTCCATCGGCG 120
|||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| ||
Sbjct 54 CATACG-TTGCTGTCCCACGTTGTTCTT-TTGTTTACTCTCTCTCTCTCCTCCATCGTCG 111
Query 121 ACGACCACCGGAGATCAGCGTCACCGTACCAAAACA-TCATTTACCTTCTTTTAGATTTG 179
|| ||||||||||||||| ||||||||||||||| | |||||| ||||| | |||||||
Sbjct 112 ACTACCACCGGAGATCAGAGTCACCGTACCAAAA-ATTCATTTGCCTTCATAAAGATTTG 170
Query 180 TTGTTTTTTAATC-A--G-TTGAATCGGAATAAAATATCGCATCAGAGATGAGTAACGAG 235
|| |||||||||| | | |||||||||||| ||||||| ||||||| ||||||||||||
Sbjct 171 TT-TTTTTTAATCAATTGATTGAATCGGAAT-AAATATCTCATCAGAAATGAGTAACGAG 228
Query 236 CTTCTCACCATCGATCCTGTCGACCTTCAATTCCCTTTTGAATTGAAGAAGCAGATCTCT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CTTCTCACCATCGATCCTGTCGACCTTCAATTCCCTTTTGAATTGAAGAAGCAGATCTCT 288
Query 296 TGTTCTCTCTATTTGGGTAACAAGACCGATAATTATGTCGCCTTCAAGGTTAAGACGACG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 289 TGTTCTCTCTATTTGGGTAACAAGACCGATAATTATGTCGCCTTCAAGGTTAAAACGACG 348
Query 356 AATCCAAAGAAGTACTGCGTTAGGCCTAATACTGGTGTTGTTCATCCCAGATCCTCTTCT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AATCCAAAGAAGTACTGCGTTAGGCCTAATACTGGTGTTGTTCATCCCAGATCCTCTTCT 408
Query 416 GAAGTTTTAGTGACCATGCAAGCTCAAAAGGAAGCTCCTGCTGATCTGCAGTGTAAAGAT 475
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 409 GAAGTTTTAGTGACCATGCAAGCTCAAAAGGAAGCTCCCGCTGATATGCAGTGTAAAGAT 468
Query 476 AAGTTCTTGCTTCAATGTGTAGTCGCTAGTCCCGGAGCCACCCCCAAGGATGTTACACAT 535
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 469 AAGTTCTTGCTTCAATGTGTAGTGGCTAGTCCCGGAGCCACCCCCAAGGATGTTACTCAT 528
Query 536 GAGATGTTTAGCAAAGAGGCAGGGCATCGAGTTGAAGAGACTAAATTGAGAGTTGTCTAT 595
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 529 GAGATGTTTAGCAAAGAGGCAGGGCATCGAGTCGAAGAGACTAAATTGAGAGTTGTCTAT 588
Query 596 GTTGCTCCACCACGACCACCATCACCGGTTCGAGAAGGATCTGAAGAGGGCTCTTCACCG 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GTTGCTCCACCACGACCACCATCACCGGTTCGAGAAGGATCTGAAGAGGGCTCTTCACCC 648
Query 656 AGGGCTTCTGTCTCTGATAATGGGAATGCTTCTGATTTTACTGCTGCTCCAAGATTTAGC 715
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 649 AGGGCTTCTGTCTCCGATAATGGGAATGCTTCTGATTTCACTGCTGCTCCAAGATTTAGC 708
Query 716 GCAGACAGGGTTGATGCTCAGGATAATTCATCTGAGGCAAGAGCTCTGGTCACAAAACTC 775
|| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||
Sbjct 709 GCGGACAGGGTTGATGCTCAGGATAACTCATCTGAGGCAAGAGCTTTGGTCACAAGACTC 768
Query 776 ACCGAGGAAAAGAACTCTGCGGTTCAACTGAACAACAGGCTTCAACAAGAATTGGACCAG 835
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 769 ACCGAGGAAAAGAACTCTGCAGTTCAATTGAACAACAGGCTTCAACAAGAATTGGACCAG 828
Query 836 TTGAGGCGCGAAAGCAAGAGAAGTAAGAGTGGTGGAATCCCTTTCATGTACGTTCTTCTG 895
|||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 829 TTGAAGCGCGAAAGCAAGAGAAGTCAGAGTGGTGGAATCCCGTTCATGTACGTTCTTCTG 888
Query 896 GTCGGCCTAATCGGTTTAATCCTGGGATACATTATGAAGAGGACATGATCAGATCCCTTC 955
||||| ||||||||||||||| |||||||||||||||||||||||||||| | || ||||
Sbjct 889 GTCGGACTAATCGGTTTAATCTTGGGATACATTATGAAGAGGACATGATCTGCTCGCTTC 948
Query 956 AAcaaaatactccaaaagtctcaaa-gtgcttaaaaaagcattgaaaaggaaagaaa-tc 1013
|||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||| ||
Sbjct 949 AACAAAATACTCCACAAGTCTCAAAAGTGCTTAAAAA-GCATTGAAAAAGAAAGAAAATC 1007
Query 1014 aaaTTGTGTGAGGAGGACAATCTTCTCTTCTGCCTTATCGTCGTCATGCACCTTTGGTTA 1073
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1008 AAATTGTGTGAGGAGGACACTCTTCTCTTCTGCCTTATCGTCGTCATGCACCTTTGATTA 1067
Query 1074 AAAT-CTGAACTTAGTGCGTTAGAGGATTTGTATTACGGTTTCCATAAGACTTAGAATTG 1132
|||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1068 AAATTCTGAACTTAGTGCGTTAGAGGATTTGTATTACTGTTTCCACAAGACTTAGAATTT 1127
Query 1133 TCACAAAATCTCCTTTTTCCTCTCTCTTATTACAACTTTGTGTAGT 1178
||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 1128 TCACAAAGTCTCCTTTTTCATCTCTCTTTTTACAACTTTGTGTAGT 1173
> Ahg486536 jgi|Araly1|486536|fgenesh2_kg.5__2528__AT3G60600.2
Length=1310
Score = 490 bits (265), Expect = 1e-137
Identities = 461/551 (84%), Gaps = 31/551 (6%)
Strand=Plus/Plus
Query 223 GATGAGT-A-A-CGAGCTTCTCACCATCGATCCTGTCGACCTTCAATTCCCTTTTGAATT 279
||||||| | | ||||||||||||| | || ||| |||| ||||||||||||||||||||
Sbjct 122 GATGAGTAACAGCGAGCTTCTCACCGTGGAGCCTCTCGATCTTCAATTCCCTTTTGAATT 181
Query 280 GAAGAAGCAGATCTCTTGTTCTCTCTATTTGG-GTAACAAGACCGATAATTATGTCGCCT 338
|||||||||||||||||| ||||| |||||| | ||||||||||| ||| |||| ||||
Sbjct 182 GAAGAAGCAGATCTCTTGCTCTCTGTATTTGACG-AACAAGACCGACAATAATGTTGCCT 240
Query 339 TCAAGGTTAAGACGACGAATCC-AAAGAAGTACTGCGTTAGGCCTAATACTGGTGTTGTT 397
| ||||||||||| |||||||| ||| ||||| || ||||||||||| ||||| ||||||
Sbjct 241 TTAAGGTTAAGACTACGAATCCGAAA-AAGTATTGTGTTAGGCCTAACACTGGAGTTGTT 299
Query 398 CATCCCAGATCCT-CTTCTGAAGTT-TTAGTGACCATGCAAGCTCAAAAGGAAGCTCCTG 455
| |||||| || | ||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 300 CTTCCCAGGTC-TACTTGTGAAGTTCTT-GTGACCATGCAAGCTCAAAAGGAAGCTCCTT 357
Query 456 CTGATCTGCAGTGTAAAGATAAGTT-CTTGCTTCAATGTGT-AGTCGCTAGTCCCGGAGC 513
| ||| ||||||| || || ||||| || ||| ||| |||| | | |||||||| || |
Sbjct 358 CAGATATGCAGTGCAAGGACAAGTTTCT-GCTCCAAGGTGTGA-TAGCTAGTCCTGGTGT 415
Query 514 CACCCCCAAGGATGTTACACATGAGATGTTTAGCAAAGAGGCAGGGCATCGAGTTGAAGA 573
||| ||||||| ||||| | ||||||||||||||||||||| || |||| |||||| ||
Sbjct 416 CACAGCCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGACATCTAGTTGAGGA 475
Query 574 GACTAAATTGAGAGTTGTCT-ATGTTGCTCCACCACGACCACCATCACCGGTTCGA-GAA 631
|||||| |||||||| || ||||||||||||||||||||||||||||||||| | |||
Sbjct 476 AACTAAACTGAGAGTTA-CTTATGTTGCTCCACCACGACCACCATCACCGGTTC-ACGAA 533
Query 632 GGATCTGAAGAGGGCTCTTCACCGAGGGCTTCTGTCTCTGATAATGGGA-ATGCTTCTGA 690
|||||||||||||| |||||||| |||||||||||||| |||||||| | ||| ||||||
Sbjct 534 GGATCTGAAGAGGGTTCTTCACCCAGGGCTTCTGTCTCAGATAATGG-ACATGGTTCTGA 592
Query 691 -TTTTACTGC--TGCTC-----CA-AGATTTAGCGCAGACAGGGTTGATGCTCAGGATAA 741
|||| ||| ||||| || |||||||||| ||||||| ||| | || || ||
Sbjct 593 GTTTT-CTGTAATGCTCTGTTTCAGAGATTTAGCGTGGACAGGGCTGAACCGCAAGAAAA 651
Query 742 TTCATCTGAGG 752
|||||||||
Sbjct 652 CACATCTGAGG 662
> Ahg899705 jgi|Araly1|899705|Al_scaffold_0004_355
Length=417
Score = 237 bits (128), Expect = 2e-61
Identities = 315/402 (78%), Gaps = 25/402 (6%)
Strand=Plus/Plus
Query 258 ACCTTCAATTCCCTTTTGAATTGAAGAAGCAGATCTCTTGTTCTCTCTAT-TTGG-GTAA 315
|||||||||||||||||||||||||||||||||| ||||| ||||| || ||| | ||
Sbjct 5 ACCTTCAATTCCCTTTTGAATTGAAGAAGCAGATGTCTTGCTCTCT-TAACTTGACG-AA 62
Query 316 CAAGACCGATAATTATGTCGCCTTCAAGGTTAAGACGACGAATCC-AAAGAAGTACTGCG 374
|||||| || ||| ||| ||||| ||||||||||||| ||||| ||| || || ||||
Sbjct 63 CAAGACAGACAATAATGGGGCCTTTAAGGTTAAGACGAAAAATCCGAAA-AATTATTGCG 121
Query 375 TTAGGCCTAAT-ACTGGTGTTGTTCATCCCA-GATCCTCTTCTGAAGTT-TTAGTGACCA 431
||||| ||||| | ||| | ||| ||| | | || ||| | ||||| || ||||| |
Sbjct 122 TTAGGTCTAATTA-TGGACTAATTCTTCCAAAG-TCAACTTGTAAAGTTCTT-GTGACAA 178
Query 432 TGCAAGCTCAAAAGGAAGCTCCTG---CTGATCTGCAGTGTAAAGATAAGTTCT-TGCTT 487
||||||| |||||||||| || | ||||| ||||| | || || ||||| | || ||
Sbjct 179 TGCAAGCCCAAAAGGAAGTTCTTAATTCTGATATGCAGAGCAATGAAAAGTT-TATGATT 237
Query 488 CAATGTGTAGTCGCTAGTCCCGGAGC-CACCCCCAAGGATGTTACACATGAGATGTTTAG 546
||| ||||| | |||||||| ||| | ||| |||| || ||||| | ||||| ||| ||
Sbjct 238 CAAAGTGTAATAGCTAGTCCTGGA-CTCACAGCCAAAGAAGTTACTCGTGAGACGTTAAG 296
Query 547 CAAAGAGGCAGGGCATCGAGTTGAAGAGACTAAATTGAGAGTTGTCT-ATGTT-GCTCCA 604
||||| | ||||||| |||||| ||||||||| ||| |||| ||| ||||| ||||||
Sbjct 297 GAAAGAATCGGGGCATCTAGTTGAGGAGACTAAACTGAAAGTT-TCTTATGTTTGCTCCA 355
Query 605 CCACGACCACCATCACCGGTTCGAG-AAGGATCTGAAGAGGG 645
||||||| || |||||| ||| | ||||| | ||||||||
Sbjct 356 CCACGACAAC-ATCACCAATTC-ACCAAGGACCAGAAGAGGG 395
> Ahg899704 jgi|Araly1|899704|Al_scaffold_0004_354
Length=660
Score = 230 bits (124), Expect = 3e-59
Identities = 292/371 (79%), Gaps = 19/371 (5%)
Strand=Plus/Plus
Query 230 AACGAGCTTCTCACCATCGATCCTGTCG-ACCTTCAATTCCCTTTTGAATTGAAGAAGCA 288
||||||||||||| ||||| ||| | | |||||||||||||||||||||||||||||||
Sbjct 286 AACGAGCTTCTCAAAATCGAGCCTAT-GTACCTTCAATTCCCTTTTGAATTGAAGAAGCA 344
Query 289 GATCTCTTGTTCTCTCTAT-TTGG-GTAACAAGACCGATAATTATGTCGCCTTCAAGGTT 346
||| ||||| ||||| || ||| | |||||||| || ||| ||| ||||| ||||||
Sbjct 345 GATGTCTTGCTCTCT-TAACTTGACG-AACAAGACAGACAATAATGGGGCCTTTAAGGTT 402
Query 347 AAGACGACGAATCC-AAAGAAGTACTGCGTTAGGCCTAAT-ACTGGTGTTGTTCATCCCA 404
||||||| ||||| ||| || || ||||||||| ||||| | ||| | ||| ||| |
Sbjct 403 AAGACGAAAAATCCGAAA-AATTATTGCGTTAGGTCTAATTA-TGGACTAATTCTTCCAA 460
Query 405 -GATCCTCTTCTGAAGTT-TTAGTGACCATGCAAGCTCAAAAGGAAGCTCCTG---CTGA 459
| || ||| | ||||| || ||||| |||||||| |||||||||| || | ||||
Sbjct 461 AG-TCAACTTGTAAAGTTCTT-GTGACAATGCAAGCCCAAAAGGAAGTTCTTAATTCTGA 518
Query 460 TCTGCAGTGTAAAGATAAGTTCT-TGCTTCAATGTGTAGTCGCTAGTCCCGGAGCCACCC 518
| ||||| | || || ||||| | || ||||| ||||| | |||||||| | || |||
Sbjct 519 TATGCAGAGCAATGAAAAGTT-TATGATTCAAAGTGTAATAGCTAGTCCTGCAGTCACAG 577
Query 519 CCAAGGATGTTACACATGAGATGTTTAGCAAAGAGGCAGGGCATCGAGTTGAAGAGACTA 578
|||| || ||||| | ||||| |||||| ||||| ||||||||| |||||| |||||||
Sbjct 578 CCAAAGAAGTTACTCGTGAGACGTTTAGGAAAGAATCAGGGCATCTAGTTGAGGAGACTA 637
Query 579 AATTGAGAGTT 589
|| ||| ||||
Sbjct 638 AACTGAAAGTT 648
> Ahg899703 jgi|Araly1|899703|Al_scaffold_0004_353
Length=660
Score = 230 bits (124), Expect = 3e-59
Identities = 292/371 (79%), Gaps = 19/371 (5%)
Strand=Plus/Plus
Query 230 AACGAGCTTCTCACCATCGATCCTGTCG-ACCTTCAATTCCCTTTTGAATTGAAGAAGCA 288
||||||||||||| ||||| ||| | | |||||||||||||||||||||||||||||||
Sbjct 286 AACGAGCTTCTCAAAATCGAGCCTAT-GTACCTTCAATTCCCTTTTGAATTGAAGAAGCA 344
Query 289 GATCTCTTGTTCTCTCTAT-TTGG-GTAACAAGACCGATAATTATGTCGCCTTCAAGGTT 346
||| ||||| ||||| || ||| | |||||||| || ||| ||| ||||| ||||||
Sbjct 345 GATGTCTTGCTCTCT-TAACTTGACG-AACAAGACAGACAATAATGGGGCCTTTAAGGTT 402
Query 347 AAGACGACGAATCC-AAAGAAGTACTGCGTTAGGCCTAAT-ACTGGTGTTGTTCATCCCA 404
||||||| ||||| ||| || || ||||||||| ||||| | ||| | ||| ||| |
Sbjct 403 AAGACGAAAAATCCGAAA-AATTATTGCGTTAGGTCTAATTA-TGGACTAATTCTTCCAA 460
Query 405 -GATCCTCTTCTGAAGTT-TTAGTGACCATGCAAGCTCAAAAGGAAGCTCCTG---CTGA 459
| || ||| | ||||| || ||||| |||||||| |||||||||| || | ||||
Sbjct 461 AG-TCAACTTGTAAAGTTCTT-GTGACAATGCAAGCCCAAAAGGAAGTTCTTAATTCTGA 518
Query 460 TCTGCAGTGTAAAGATAAGTTCT-TGCTTCAATGTGTAGTCGCTAGTCCCGGAGCCACCC 518
| ||||| | || || ||||| | || ||||| ||||| | |||||||| | || |||
Sbjct 519 TATGCAGAGCAATGAAAAGTT-TATGATTCAAAGTGTAATAGCTAGTCCTGCAGTCACAG 577
Query 519 CCAAGGATGTTACACATGAGATGTTTAGCAAAGAGGCAGGGCATCGAGTTGAAGAGACTA 578
|||| || ||||| | ||||| |||||| ||||| ||||||||| |||||| |||||||
Sbjct 578 CCAAAGAAGTTACTCGTGAGACGTTTAGGAAAGAATCAGGGCATCTAGTTGAGGAGACTA 637
Query 579 AATTGAGAGTT 589
|| ||| ||||
Sbjct 638 AACTGAAAGTT 648
> Ahg932384 jgi|Araly1|932384|scaffold_400372.1
Length=289
Score = 143 bits (77), Expect = 3e-33
Identities = 145/176 (82%), Gaps = 12/176 (7%)
Strand=Plus/Plus
Query 217 ATCAGAGATGAGT---AACGAGCTTCTCACCATCGATCCTGTCG-ACCTTCAATTCCCTT 272
||| ||||||||| ||||||||||||| ||||| ||| | | |||||||||||||||
Sbjct 15 ATC-GAGATGAGTAACAACGAGCTTCTCAAAATCGAGCCTAT-GTACCTTCAATTCCCTT 72
Query 273 TTGAATTGAAGAAGCAGATCTCTTGTTCTCTCTATTTGG--GTAACAAGACCGATAATTA 330
||||||||||||||||||| ||||| ||||| || | | | |||||||| | ||| |
Sbjct 73 TTGAATTGAAGAAGCAGATGTCTTGCTCTCT-TAACTCGACG-AACAAGACAGCCAATAA 130
Query 331 TGTCGCCTTCAAGGTTAAGACGACGAATCC-AAAGAAGTACTGCGTTAGGCCTAAT 385
|| ||||| |||||||||||||| ||||| ||| || || |||||||||||||||
Sbjct 131 CGTGGCCTTTAAGGTTAAGACGACAAATCCGAAA-AATTATTGCGTTAGGCCTAAT 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5