BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45150.1
Length=1760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483649 jgi|Araly1|483649|fgenesh2_kg.4__2709__AT2G45150.1 1229 0.0
> Ahg483649 jgi|Araly1|483649|fgenesh2_kg.4__2709__AT2G45150.1
Length=1615
Score = 1229 bits (665), Expect = 0.0
Identities = 778/831 (94%), Gaps = 13/831 (2%)
Strand=Plus/Plus
Query 97 AATGACAAATACGAACACACTCTTCCTCAGACATGATGATGATTCAGAGAttttgatttt 156
||||||| | || ||||||||| | ||| ||||||||||||||||||||||||||| |||
Sbjct 24 AATGACACACACAAACACACTC-T-CTCCGACATGATGATGATTCAGAGATTTTGA-TTT 80
Query 157 tcaagaaaactctgtttttcctctttttgtttttGCCTCTTGGGGCATTTGGAGAGCAAT 216
||||||||||||| ||||||||| | || ||||| || | | ||||| || ||||||
Sbjct 81 TCAAGAAAACTCTCTTTTTCCTC-TGTT-TTTTT-CC-C-T--ATCATTTTGAAAGCAAT 133
Query 217 GGCGACTTTTGCTGAACTTGTTTTATCGACTTCTCGCTGTACATGCCCTTGCCGTTCATT 276
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 GGCGTCTTTTGCTGAACTTGTTTTATCGACTTCTCGCTGTACATGCCCTTGCCGTTCATT 193
Query 277 CACTAGAAAACCCCTAATTCGTCCCCCTTTATCTGGTCTGCGTCTC--C-CCGGTGATAC 333
| ||| ||||||| |||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 194 CTCTAAAAAACCCTTAATTCTTCCCCCTTTATCTGGTCTGCGTCTCGTCGGTGGTGATAC 253
Query 334 CAAACCATTGTTTCGTTCCGGACTTGGTCGGATTTCTGTTAGCCGGCGTTTCCTCACGGC 393
||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||| ||
Sbjct 254 CAAACCATTGTTTCGTTCCGGCCTTGGTCCGATTTCCGTTAAACGGCGTTTCCTCACTGC 313
Query 394 CGTTGCTCGAGCTGAATCAGACCAGCTTGGTGATGATGACCACTCAAAGGGAATTGATAG 453
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 314 CGTTGCTCGAGCTGAATCAGACCAGCTTGGTGATGATGACAACTCAAAGGGAATTGATAG 373
Query 454 AATCCATAACTTGCAGAATGTGGAAGATAAGCAGAAGAAAGCAAGCCAGCTTAAGAAAAG 513
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 AATCCATGACTTGCAAAATGTGGAAGATAAGCAGAAGAAAGCAAGCCAGCTTAAGAAAAG 433
Query 514 AGTGATCTTTGGTATTGGCATTGGTTTACCTGTTGGATGTGTTGTGTTAGCTGGAGGATG 573
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 434 AGTGATCTTTGGTATTGGCATTGGATTACCTGTTGGATGTGTTGTGTTAGCTGGAGGATG 493
Query 574 GGTTTTCACTGTAGCTTTAGCATCTTCTGTTTTTATCGGTTCCCGCGAATATTTCGAGCT 633
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 494 GGTTTTCACTGTAGCCTTAGCAGCTTCTGTTTTTATCGGTTCCCGCGAATATTTCGAGCT 553
Query 634 TGTTAGAAGTAGAGGCATAGCTAAAGGAATGACTCCTCCTCCACGATATGTATCTCGAGT 693
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 554 CGTTAGAAGTAGAGGCATAGCTAAAGGAATGACACCTCCTCCACGATATGTCTCTCGAGT 613
Query 694 TTGCTCGGTTATATGTGCCCTTATGCCCATACTTACACTGTACTTTGGTAACATTGATAT 753
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TTGCTCAGTTATATGTGCCCTTATGCCCATACTTACACTGTACTTTGGTAACATTGATAT 673
Query 754 ATTGGTGACATCTGCAGCATTTGTTGTTGCAATAGCATTGTTAGTACAAAGAGGATCCCC 813
|||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||||||
Sbjct 674 ATTGGTGACATCCGCAGCATTTCTTGTTGCAATAGCATTGTTAGTACAGAGGGGATCCCC 733
Query 814 ACGTTTTGCTCAGCTGAGTAGTACAATGTTTGGTCTGTTTTACTGTGGTTATCTCCCTTC 873
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 734 ACGTTTTTCTCAGCTGAGTAGTACAATGTTTGGTCTATTTTACTGTGGTTATCTCCCTTG 793
Query 874 TTTCTGGGTTAAGCTTCGCTGTGGTTTAGCTGCTCCTGCGCTTAACACTGG 924
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TTTCTGGGTTAAGCTTCGCTGTGGTTTAGCTGCTCCTGCGCTTAACACTGG 844
Score = 931 bits (504), Expect = 0.0
Identities = 578/614 (94%), Gaps = 4/614 (1%)
Strand=Plus/Plus
Query 924 GTATCGGAAGGACATGGCCAATTCTTCTTGGTGGTCAAGCTCATTGGACAGTTGGACTTG 983
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GTATTGGAAAGACATGGCCAATTCTTCTTGGTGGTCAAGCTCATTGGACAGTTGGACTTG 936
Query 984 TGGCAACATTGATTTCTTTCAGCGGTGTAATTGCGACAGACACATTTGCTTTTCTCGGTG 1043
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 937 TGGCAACATTGATTTCTTTTAGCGGTGTAATTGCGACGGACACATTTGCTTTTCTCGGTG 996
Query 1044 GAAAGACTTTTGGTAGGACACCTCTTACTAGTATTAGTCCCAAGAAGACATGGGAAGGAA 1103
| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 997 GCAAGGCTTTTGGTAGGACACCTCTTACTAGTATTAGTCCCAAAAAGACATGGGAAGGGA 1056
Query 1104 CTATTGTAGGACTTGTTGGTTGTATAGCCATTACCATAT-TACTCTCTAAATATCTCAGT 1162
|| |||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||
Sbjct 1057 CTTTTGTAGGACTTGTTGGTTGTATAGCCATTACCAT-TCTACTCTCTAAATCTCTTAGT 1115
Query 1163 TGGCCACAATCTCTGTTCAGCTCAGTAGCTTTTGGGTTTCTTAACTTCTTTGGGTCAGTC 1222
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1116 TGGCCTCAATCTCTGTTCAGCTCAATAGCTTTTGGGTTTCTTAACTTCTTTGGGTCAGTC 1175
Query 1223 TTTGGTGATCTTACTGAATCAATGATCAAGCGTGATGCTGGCGTCAAAGACTCTGGTTCA 1282
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1176 TTTGGTGATCTTACTGAATCAATGATCAAGCGTGATGCCGGCGTCAAAGACTCTGGTTCA 1235
Query 1283 CTTATCCCAGGACACGGTGGAATATTAGATAGAGTTGATAGTTACATTTTCACCGGCGCA 1342
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 CTCATCCCAGGACACGGAGGAATATTAGATAGAGTTGATAGTTACATTTTCACCGGCGCA 1295
Query 1343 TTAGCTTATTCATTCATCAAAACATCCCTAAAACTTTACGGAGTTTGATGATCTACCGGA 1402
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1296 CTAGCTTATTCATTCATCAAAACATCCCTAAGACTTTATGGAGTTTGATGATCTACCGGA 1355
Query 1403 AAGACCATATCTTTAGG-AAACTTACAAGCATATCCATGGTAAGATCCGGCAATGTAGCT 1461
|| |||||| ||| || |||||||||||||| |||| | ||| ||||||||||||||||
Sbjct 1356 AATACCATAGCTTC-GGTAAACTTACAAGCATTTCCACGATAAAATCCGGCAATGTAGCT 1414
Query 1462 GTGAAACAAATGGTGCAGTGTTCTCTGTTGCTACCTTTGAAAGATGCAGAGGATTTGAAG 1521
||||||||||||||||||||||| |||||| | |||||||||||||||||||| | | ||
Sbjct 1415 GTGAAACAAATGGTGCAGTGTTCACTGTTGTTGCCTTTGAAAGATGCAGAGGACTAGGAG 1474
Query 1522 GTGAAAGCAGAGCC 1535
||||||||||||||
Sbjct 1475 GTGAAAGCAGAGCC 1488
Score = 126 bits (68), Expect = 5e-28
Identities = 116/136 (85%), Gaps = 15/136 (11%)
Strand=Plus/Plus
Query 1594 GTTTGGTTTATGTTTGATATAGTTGACCCAGAAGGGCAGTCTTTACTCTTTAGGGGTGCA 1653
|||||||||||||||| |||||||||||| |||||||| | || ||| | ||||||
Sbjct 1489 GTTTGGTTTATGTTTG--ATAGTTGACCCAAAAGGGCAG----T-CT-TTT-GAGGTGCA 1539
Query 1654 TAATTTGGTAGTTATACGGATTATTATTTTTAGACAAATT--A---T-CTTAGGAACTCT 1707
|||||||||||| ||||| ||||||||||||||| ||||| | | ||||||||||||
Sbjct 1540 TAATTTGGTAGTCATACGAATTATTATTTTTAGATAAATTTTAAGCTTCTTAGGAACTCT 1599
Query 1708 TTATTCTTATGAAAAA 1723
||||||||||||||||
Sbjct 1600 TTATTCTTATGAAAAA 1615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66048484830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5