BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45160.1
Length=2289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483651 jgi|Araly1|483651|fgenesh2_kg.4__2711__AT2G45160.1 3024 0.0
Ahg486537 jgi|Araly1|486537|fgenesh2_kg.5__2529__AT3G60630.1 573 2e-162
> Ahg483651 jgi|Araly1|483651|fgenesh2_kg.4__2711__AT2G45160.1
Length=2185
Score = 3024 bits (1637), Expect = 0.0
Identities = 2019/2191 (92%), Gaps = 76/2191 (3%)
Strand=Plus/Plus
Query 105 TTGTTGAGGAGGCGATGCCCTTATCCTTTGAAAGGTTTCAAGGGGAGGGGGTGTTTGGTT 164
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 TTGTCGAGGAGGCGATGCCCTTATCCTTTGAAAGGTTTCAAGGGGAGGGGGTGTTTGGTT 115
Query 165 TATCTTCTTCTTCTTTCTATTCAGATTCTCAGAAAATCTGGTCCAATCAAGACAAAACCG 224
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 116 TA---TCTTCTTCTTTCTATTCAGATTCTCCTAAAATCTGGTCCAATCAAGACAAAACCG 172
Query 225 AAGCAAAACAAGAAGATCTTGGTTATGTTGTCGGTGGTTTTTTACCGGAGCCGACGTCTG 284
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 173 AAGCAAAAC---AAGATCTTGGTTATGTTGTCGGTGGTCTTTTACCGGAGCCGACGTCTG 229
Query 285 TTCTCGACGCTCTAAGAAGTCCTAGTCCTCTCGCTTCTTATTCTTCTACCACCACCACGC 344
||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 230 TTCTCGACGCTTTAAGGAGTCCTAGTCCTCTCGCTTCTTATTCTTCTACAACCACCACGC 289
Query 345 TGTCTTCCTCTCACGGCGGCGGTGGTACCACCGTCACCAACACCACCGTAACCGCCGGTG 404
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGTCTTCCTCTCA---CGGCGGTGGTACCACCGTCACCAACACCACCGTAACCGCCGGTG 346
Query 405 ATGATAACAATAACAATAAATGTAGTCAGATGGGTTTGGATGATCTTGACGGTGTTCTCT 464
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 347 ATGAT---AATAATAATAAATGTAGTCAGATGGGTTTGGATGATCTTGATGGTGTTCTCT 403
Query 465 CTGCTTCTTCTCCTGGTCAAGAGCAGAGTATCTTGAGACTTATCATGGACCCGGGTTCTG 524
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 404 CTGCTTCTTCTCCTGGTCAAGAACAGAGTATCTTGAGACTTATCATGGACCCGGGTTCTG 463
Query 525 CCTTCGGTGTTTTCGACCCGGG-TTTCGGATTCGGGTCTGGTTCCGGGCCTGTGTCTGCT 583
||||||||||| |||||||| ||| ||||||||||||||||||||||| || ||
Sbjct 464 GATTCGGTGTTTTTGACCCGGGCTTT-GGATTCGGGTCTGGTTCCGGGCC--TG--TG-- 516
Query 584 CCGGTGAGTGATAATTCGAAT-CTTCTGTGTAACTTCCCGTTTCAAGAGATTACGAATCC 642
||||||| ||| ||||||||| ||| |||||| ||||||||||||||||||| |||||||
Sbjct 517 CCGGTGACTGAAAATTCGAATCCTT-TGTGTAGCTTCCCGTTTCAAGAGATTGCGAATCC 575
Query 643 AGCAGAAGCTTTGATCAATCCTTCAAATCATTGCCTGTTCTATAATCCTCCGTTATCTCC 702
|||||||||||||||||||||| ||||||| || |||||| ||||||||| ||||||||
Sbjct 576 AGCAGAAGCTTTGATCAATCCTACAAATCACTGTTTGTTCTCTAATCCTCCATTATCTCC 635
Query 703 ACCGGCTAAACGGTTTAATTCCGGATCTCTTCATCAACCCGTTTTCCCTTTATCGGATCC 762
|||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 636 ACCGGCGAAACGGTTTAATTCCGGATCTCTTCATCAACCCATTTTCCCTTTCTCGGATCC 695
Query 763 GGATCCGGGTCACGACCCGGTTCGTCGTCAACATCAGTTTCAGTTTCCGTTT---TATCA 819
||||||||||||||||||||||||||| || || |||||||||||||||||| | |||
Sbjct 696 GGATCCGGGTCACGACCCGGTTCGTCGGCAGCACCAGTTTCAGTTTCCGTTTCCGTTTCA 755
Query 820 -CAACAACCAGCAACAACAATTCCCGTCGTCTTCTTCTTCCACGGCGGTGGCTATGGTTC 878
| ||||||||||||||||| | | |||||||||| | ||||||||||||||||||
Sbjct 756 TC-ACAACCAGCAACAACAAAT---GCCGTCTTCTTC-T--GCGGCGGTGGCTATGGTTC 808
Query 879 CGGTTCCGTCGCCGGGAATGGCCGGCGATGACCAGTCAGTCATCATCGAGCAGCTGTTCA 938
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 CGGTTCCGTCTCCGGGAATGGCCGGCGATGACCAGTCAGTCATCATCGAGCAGCTGTTCA 868
Query 939 ACGCGGCGGAGCTAATCGGAACCACCGGAAACAAC---AACGGCGACCACACCGTTCTCG 995
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 869 ACGCGGCGGAGCTAATCGGAGCCACCGGAAACAACAATAACGGCGACCACACCGTTCTCG 928
Query 996 CGCAAGGGATATTGGCGCGGCTCAATCACCATCTCAACACTAGTAGTAACCACAAGTCTC 1055
||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||||
Sbjct 929 CGCAAGGGATATTGGCGCGGCTCAATCACCATCTC-A-AC-AGTAGTAACCATAAGTCTC 985
Query 1056 CGTTTCAAAGAGCAGCTTCTCACATCGCTGAAGCTCTCCTCTCACTCATCCACAACGAAT 1115
| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 986 CTTTTCAAAGAGCGGCTTCTCACATCGCTGAAGCTCTCCTTTCAATCATCCACAACGACG 1045
Query 1116 CATCACCACCGTTAATCACGCCGGAGAATCTGATTCTCCGAATCGCCGCTTACAGATCCT 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 CATCACCACCGTTAATCACGCCGGAGAATCTGATTCTCCGAATCGCCGCTTACAGATCCT 1105
Query 1176 TCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACAGCGAATCAATCGATTCTTG 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TCTCCGAAACCTCGCCGTTTCTCCAATTCGTTAACTTCACAGCGAATCAATCGATTCTTG 1165
Query 1236 AGTCCTGCAACGAATCAGGGTTTGATCGGATCCACATTATCGATTTCGACGTTGGATATG 1295
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1166 AGTCCTGCAACGAATCAGGGTTTGATCGAATCCACATTATCGATTTCGACGTTGGATATG 1225
Query 1296 GAGGACAATGGTCGTCTCTAATGCAAGAACTCGCTTCCGGAGTTGGAGGAAGAAGAAGAA 1355
||||||||||||| |||||||||||||||||||| |||||| | | | |||||||||
Sbjct 1226 GAGGACAATGGTCATCTCTAATGCAAGAACTCGCCCCCGGAG--G-A--A-GAAGAAGAA 1279
Query 1356 ACAGAGCATCGTCTCTGAAATTAACAGTCTTTGCTCCTCCACCTTCTACAGTCTCCGACG 1415
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1280 ACAGAGCATCATCTCTGAAATTAACAGTCTTTGCTCCTCCTCCTTCAACAGTCTCCGACG 1339
Query 1416 AGTTCGAGCTTCG-TTTCACAGAGGAAAATCTCAAAACATTCGCCGGAGAAGTCAAGATT 1474
|||||||||| || ||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 1340 AGTTCGAGCTCCGATTT-ACGGAGGAAAATCTCAAAACTTTTGCCGGAGAAGTCAAGATT 1398
Query 1475 CCTTTCGAAATCGAGTTACTAAGCGTAGAGCTTCTTCTAAACCCAGCTTATTGGCCACTC 1534
|| ||||| |||||||| |||||| | |||||||||||||||||| ||||||||||||||
Sbjct 1399 CCGTTCGAGATCGAGTTGCTAAGCATCGAGCTTCTTCTAAACCCATCTTATTGGCCACTC 1458
Query 1535 TCTCTACGTTCATCGGAAAAAGAAGCAATCGCAGTGAATCTTCCAGTAAACTCCGTCGCC 1594
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1459 TCTCTCCGTTCATCGGAAAAAGAAGCAATCGCAGTGAATCTTCCCGTAAACTCCGTCGCC 1518
Query 1595 TCCGGTTACCTTCCGTTAATCCTCCGATTCCTTAAACAACTATCACCAAACATCGTCGTT 1654
|||||||||||||| ||||||||||| ||||| |||||| | ||||||||| ||||||||
Sbjct 1519 TCCGGTTACCTTCCATTAATCCTCCGTTTCCTCAAACAAATCTCACCAAACGTCGTCGTT 1578
Query 1655 TGCTCAGACAGAGGATGTGACCGTAACGACGCGCCGTTTCCAAACGCAGTGATTCATTCG 1714
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1579 TGCTCAGACAGAGGATGTGACCGTAACGACGCGCCGTTTCCAAACGCCGTGATCCACGCG 1638
Query 1715 CTTCAATACCACACTTCTCTGCTTGAGTCTCTTGATGCTAATCAGAACCAGGACGATTCG 1774
||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1639 CTTCAGTACCACACTAGTCTGCTTGAGTCTCTGGATGCTAATCAGAACCAAGACGATTCA 1698
Query 1775 AGTATCGAGAGGTTTTGGGTTCAACCATCGATAGAGAAGCTGTTGATGAAACGACACCGT 1834
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1699 AGTATCGAGAGGTTTTGGGTTCAACCATCGATTGAGAAGCTGTTGATGAAACGACACCGT 1758
Query 1835 TGGATTGAAAGATCTCCACCGTGGAGAATCTTGTTTACACAATGTGGGTTTTCTCCGGCG 1894
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1759 TGGATTGAAAGATCTCCACCGTGGAGAAGCTTGTTTACACAATGTGGGTTTTCTCCGGCG 1818
Query 1895 AGTTTGAGTCAGATGGCGGAAGCTCAGGCGGAGTGTTTGTTGCAGAGAAATCCGGTGAGA 1954
||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1819 AGTATGAGTCAGACGGCGGAGGCTCAGGCGGAGTGTTTGTTGCAGAGGAATCCGGTGAGA 1878
Query 1955 GGGTTTCACGTTGAGAAAAGGCAGTCTTCACTTGTCATGTGTTGGCAAAGGAAAGAACTT 2014
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1879 GGGTTTCACGTTGAGAAAAGACAGTCTTCACTTGTCATGTGTTGGCAAAGGAAAGAACTT 1938
Query 2015 GTTACTGTCTCTGCTTGGAAATGTTAGACGAAGAAGAAACCACAAATCTCTCTCTCGCTT 2074
|||||||||||||||||||||| | | | ||||||||||||||
Sbjct 1939 GTTACTGTCTCTGCTTGGAAAT---A-A--A--------CCACAAATCTCTCTA------ 1978
Query 2075 AGCTAATTTCTCTGTTTTT-CTTTGTCAGATTTTAAAA-T-GTT-GTTATGTTGTTCAAT 2130
|||||||||||||| |||| |||| |||||||||||| | ||| |||||||||||||||
Sbjct 1979 AGCTAATTTCTCTGCTTTTGCTTTTTCAGATTTTAAACGTCGTTCGTTATGTTGTTCAAT 2038
Query 2131 GATGTTCTTAGTTTCGAGACTGTTG-TGTTTTAACATTTTAAGGAAGTCAGAATATATAA 2189
| ||||||||||||||| || ||| ||||||||||||||||||||||||| ||||||||
Sbjct 2039 GGTGTTCTTAGTTTCGA--CT-TTGGTGTTTTAACATTTTAAGGAAGTCAGGATATATAA 2095
Query 2190 TCAAAATCTCCTTTTGTTAGATTTTATTTTGCTCTTTTTGAGTTTATGCATAAATCTCTT 2249
||||||||||||||||||||| |||||||||||||||| | || |||||||||||||||
Sbjct 2096 TCAAAATCTCCTTTTGTTAGACTTTATTTTGCTCTTTTGG-GTCAATGCATAAATCTCTT 2154
Query 2250 GTCCAAAAACAGAAATTGTTAAAGAGATATG 2280
|||||||||||||||||| |||||||||||
Sbjct 2155 ATCCAAAAACAGAAATTGTAAAAGAGATATG 2185
> Ahg486537 jgi|Araly1|486537|fgenesh2_kg.5__2529__AT3G60630.1
Length=2195
Score = 573 bits (310), Expect = 2e-162
Identities = 866/1120 (77%), Gaps = 95/1120 (8%)
Strand=Plus/Plus
Query 987 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCATCTCAACA-CTA-GT-AGTA 1043
|||||||||||||||||||||||||||||||||||||| | || |||| | | | | ||
Sbjct 1001 CCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACAACCTTAACAACAACGACACTA 1060
Query 1044 ACCACAAG--T---C-TCCGTTTCAAAGAGCAGCTTC-TCACATCGCTGAAGCTCT-C-C 1094
|| |||| | | |||||||| ||||||||||| | | || | |||||||| | |
Sbjct 1061 ACAACAATCCTAAACCTCCGTTTCGTAGAGCAGCTTCGT-ATATAACCGAAGCTCTTCAC 1119
Query 1095 TCTCA-CT-CATC-CACAACGAATCATCACCACCGT-TAA-TCACG-CCGGAGAATCTGA 1148
|||| || || | || | | ||||||||||||| | |||| || | || || |
Sbjct 1120 TCTCTTCTTCAAGACTCATC-A-TCATCACCACCGTCTCTCTCACCTCCTCAAAACCTAA 1177
Query 1149 T-TCTCCGAATCGCCGCTTACAGATCCTTCTCCGAAACCTCGCCGTTTCTCCAATTCGTT 1207
| | || ||||||| ||||||||| | ||||| ||||| || |||||||| ||||||||
Sbjct 1178 TCTTTC-GAATCGCAGCTTACAGAGCTTTCTCGGAAACGTCACCGTTTCTTCAATTCGTC 1236
Query 1208 AACTTCACAGCGAATCA-ATCGATTCTTGAGTCCTGCAACGAATCAGGGTTTGATCGGAT 1266
|| |||||||| || || | ||||||||||||||| | ||| || |||||||| ||
Sbjct 1237 AATTTCACAGCAAACCAGA-CGATTCTTGAGTCCTTC---GAA---GGATTTGATCGAAT 1289
Query 1267 CCACATTATCGATTTCGACGTTGGATATGGAGGACAATGGTCGTCTCTAATGCAAGAACT 1326
||||||| |||||||||| | || || ||||| |||||| ||||||| || ||||| ||
Sbjct 1290 CCACATTGTCGATTTCGATATCGGTTACGGAGGTCAATGGGCGTCTCTGATTCAAGAGCT 1349
Query 1327 CGCTTCCGGAGTTGGAGGAAGAAGAAGAAACAG--AGCATC-GTCTCTGAA-ATTAACAG 1382
||| | ||| || || | || | | ||| || ||| || || |||| |||
Sbjct 1350 CGC--C-GGAAAAAGA--AACA-GATCTT-C-GTCAGC-TCCGTCGCTAAAGATTA-CAG 1399
Query 1383 TCTTT-GCTCCTCCACCTTCTACAGTCTCCGACGAGTTCGAGCTTCGTTTCACAGAGGAA 1441
|||| ||| |||| ||| || ||||||||||| |||||||| || ||||| || |||
Sbjct 1400 -CTTTCGCTTCTCC---TTCAACTGTCTCCGACGAATTCGAGCTCCGATTCACTGAAGAA 1455
Query 1442 AATCTCAAAACATTCGCCGGAGAAGTCA-AGAT-TCCTTTCGAAATCGAGTTACT--AAG 1497
||||||| || ||||| |||||| | || | ||||| |||||||||| | || ||
Sbjct 1456 AATCTCAGAAGTTTCGCTGGAGAAACCGGAG-TCTCCTT-CGAAATCGAGCT-CTTGAA- 1511
Query 1498 CGTAGAGCTTCTTCTA-AACCCAGCTTATTGGCCACTCTCTCTAC---GTTCATCGGAAA 1553
| | ||| |||| || || ||| ||||||||||||||||| ||| | |||||||| |
Sbjct 1512 CATGGAGATTCT-CTTGAATCCAACTTATTGGCCACTCTCTTTACTCCGATCATCGGAGA 1570
Query 1554 AAGAAGCAATCGCAGTGAATCTTCCAGTAAACTCCGTCGCCTCCGGTTACCTTCCGTTAA 1613
|||||||||| || |||||||||||| | | |||| | | |||||||||||| || || |
Sbjct 1571 AAGAAGCAATTGCTGTGAATCTTCCAATCAGCTCCATTGTCTCCGGTTACCTCCCATTGA 1630
Query 1614 TCCTCCGATTCCTTAAACAACTATCACCAAACATCGTCGTTTGCTCAGACAGAGGATGTG 1673
| || || ||||| || ||| | ||||||||| |||||||||||||||| ||| | || |
Sbjct 1631 TACTTCGTTTCCTCAAGCAAATCTCACCAAACGTCGTCGTTTGCTCAGATAGAAGCTGCG 1690
Query 1674 ACCGTAAC---GACGCGCCGTTTCCAAACGCAGTGATTCATTCGCTTCAATACCACACTT 1730
|||| ||| ||||||||||| || |||| |||||| | |||| || ||| |||| |
Sbjct 1691 ACCGCAACAACGACGCGCCGTTCCCTAACGGTGTGATTAACGCGCTCCAGTACTACACAT 1750
Query 1731 CTCTGCTTGAGTCTCTTGA-TGCT---AATCAGAACCA-G-G-A--C-GATTCGAGTATC 1780
||||||| |||||||| || | || |||| ||| | | | | | | |||||||||
Sbjct 1751 CTCTGCTCGAGTCTCTCGACT-CTGGGAATCTGAATAATGCGGAAGCTGCTTCGAGTATT 1809
Query 1781 GAGAGGTTTTGGGTTCAACCATCGATAGAGAAGCTGTTGATGAAACGACACCGTTGGATT 1840
||||||||||| || ||||| |||||| |||| ||||||| ||| || ||||||||||
Sbjct 1810 GAGAGGTTTTGTGTGCAACCGTCGATACAGAAACTGTTGACGAATCGTTACCGTTGGAT- 1868
Query 1841 GAA-AGATCTCCACCGTGGAGAATCTTGTTTACACAATGTGGGTTTTCTCCGGCGA-GTT 1898
| | ||||| || |||||||||| ||||||| ||||||||||||||||||| || | |
Sbjct 1869 GCAGAGATCGCCGCCGTGGAGAAGCTTGTTTGGGCAATGTGGGTTTTCTCCGGTGACGCT 1928
Query 1899 TGAGTCAGATGGCGGA-AGCTCAGGCGGAGTGTTTGTTGCAGAGAAATCCGGTGAGAGGG 1957
|||||||| |||||| | | |||||||||| |||||||||||| |||||| ||||||||
Sbjct 1929 -GAGTCAGACGGCGGAGA-CACAGGCGGAGTATTTGTTGCAGAGGAATCCGATGAGAGGG 1986
Query 1958 TTTCACGTTG-AGAAAAG---G-CA--GTC-T-T-CACTTGTCATGTGTTGGCAAAGGAA 2007
|||||| ||| |||| || | || ||| | | |||||||| |||||||||| |||||
Sbjct 1987 TTTCAC-TTGGAGAAGAGACAGTCATCGTCGTCTTCACTTGTCTTGTGTTGGCAGAGGAA 2045
Query 2008 AGAACTTGTTACTGTCTCTGCTTGGAAATGTT-AGACGAA 2046
|||||||||||||||||| ||||||||||||| ||| |||
Sbjct 2046 AGAACTTGTTACTGTCTCAGCTTGGAAATGTTGAGAGGAA 2085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86198224435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5