BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G45161.1

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935468 jgi|Araly1|935468|scaffold_403456.1                        135    5e-32


> Ahg935468 jgi|Araly1|935468|scaffold_403456.1
Length=223

 Score =  135 bits (73),  Expect = 5e-32
 Identities = 101/113 (89%), Gaps = 7/113 (6%)
 Strand=Plus/Plus

Query  1    ATGTACCGTGTTCTTGTGCCATCATTGTCGAGTCTCTTCGCAAATCCAGCGCGTGACTCT  60
            ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct  21   ATGTACCGTGTTCTTGTGCCATCATTGTCGAGTCTCTTCGCAAATGCTGCGCGTGACTCT  80

Query  61   ACTCTCCCCCTACAA-CTTAATTTGTCTTACTCTTTCA-ATTTTGGCCGTAAG  111
            ||||||    ||||| |||||| ||||||||||||| | ||| | ||||||||
Sbjct  81   ACTCTC----TACAAACTTAATCTGTCTTACTCTTT-AGATTGTAGCCGTAAG  128



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3974977032


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5