BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45170.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483652 jgi|Araly1|483652|fgenesh2_kg.4__2712__AT2G45170.1 1013 0.0
> Ahg483652 jgi|Araly1|483652|fgenesh2_kg.4__2712__AT2G45170.1
Length=656
Score = 1013 bits (548), Expect = 0.0
Identities = 632/668 (95%), Gaps = 23/668 (3%)
Strand=Plus/Plus
Query 1 ATCCAATCATAGACGAAAAGAAAAAGGTTCCtttttttGACTTTG--T--ATCCGTAGAT 56
|||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct 1 ATCCAATCATAGACGAAAAGCAAAAGGTTCCTTTTTTTGACTTTGTATCCATCCGTAGAT 60
Query 57 CAtc-t--tc-t--tcttcttcttcCAGAGTTTTATCCTTATCCGTTCCATCAAATTCTC 110
|||| | || | |||||||||||||||| | | |||||| || |||||||||||
Sbjct 61 CATCATCATCATCATCTTCTTCTTCCAGAG---T-T--TTATCC-TT--ATCAAATTCTC 111
Query 111 TCTCTAAGCAAAGATGAATAAAGGAAGCATCTTTAAGATGGACAACGATTTCGAAAAGAG 170
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 112 TCTCTAAGCAAAGATGAATAAAGGAAGCAGCTTTAAGATGGACAACGATTTCGAGAAGAG 171
Query 171 AAAAGCTGAAGCTGGAAGGATCAGGGAGAAATACCCTGATCGAATTCCTGTGATTGTGGA 230
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 AAAGGCTGAAGCTGGAAGGATCAGGGAGAAATACCCTGATCGAATTCCTGTGATTGTGGA 231
Query 231 AAAGGCTGAGAAAAGTGAAGTCCCAAATATAGACAAGAAGAAGTACCTTGTGCCATCAGA 290
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 232 AAAGGCTGAGAAAAGTGAAGTCCCAAATATAGACAAGAAGAAGTACCTTGTTCCATCAGA 291
Query 291 CCTAACAGTTGGTCAATTTGTGTATGTGATTCGGAAGAGAATCAAACTAAGTGCAGAGAA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CCTAACAGTTGGTCAATTTGTGTATGTGATTCGGAAGAGAATCAAACTAAGTGCAGAGAA 351
Query 351 AGCTATCTTCATTTTCGTAGACAATGTTCTTCCTCCAACAGGAGAGCTAATGTCAAGCGT 410
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 352 AGCTATCTTCATTTTCGTAGACAATGTTCTTCCTCCTACAGGAGAGCTAATGTCAAGCGT 411
Query 411 TTACGAGGATAAGAAAGACGAAGATGGCTTCCTTTACATCACTTACAGTGGCGAGAACAC 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTACGAGGATAAGAAAGACGAAGATGGCTTCCTTTACATCACTTACAGTGGCGAGAACAC 471
Query 471 ATTCGGTGCTTCTTCAATCTAATCTCTGACCTCTGAGAATCCGCCACGTTTTAATGCTTC 530
|||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||
Sbjct 472 ATTCGGTGCTTCTTCAATCTAATCTCTGACCT--GAGAAACGGCCACGTATTAATGCTTC 529
Query 531 TTCCCAACTTTCAATTTGTGTGTATAGTTTGTTCTCAATATTTATCATTTCTCAAATAAT 590
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 530 TTCCCAACTTTCAATTTGTGTGTATAGTTTGCTCTCAATCTTTATCATTTCTCAAATAAT 589
Query 591 TGTGATTACTATCTTCTTTTCACTTGTTAAAA-TGTACATAGACTAATCTTATAATATTA 649
||||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||
Sbjct 590 TGTGATTACTATCATCTTT-CACTTGTAAAAAATGTACATAGACTAATCTTATAATATTA 648
Query 650 TCTTCCTT 657
||||||||
Sbjct 649 TCTTCCTT 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25084879386
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5