BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45180.1
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483654 jgi|Araly1|483654|fgenesh2_kg.4__2714__AT2G45180.1 872 0.0
> Ahg483654 jgi|Araly1|483654|fgenesh2_kg.4__2714__AT2G45180.1
Length=579
Score = 872 bits (472), Expect = 0.0
Identities = 548/584 (94%), Gaps = 7/584 (1%)
Strand=Plus/Plus
Query 14 TATCTCTCCTTCACATTCATCCCAAAACATTACAAAACGTTACAATGGCTTCTAAGGCTC 73
||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1 TATCTCTCCTTCACATTCACCCCAAAACATTACAAAAAGTTCCAATGGCTTCTAAGGCTC 60
Query 74 TTGCAGTTACAGCTCTTCTTATTACACTTAATCTTCTTTTCTTCACCTTTGTAACCTCCA 133
|||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 61 TTGCAGTTACTGCTCTTCTTATTACCCTTAATCTTCTTTTCTTCACCTTTGTTACCTCCA 120
Query 134 CAAAATGTCCACCAACTACTCCTAAACCCCCAAAAACCCCGAAATCGCCTAAGAAGGCTC 193
||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||| ||
Sbjct 121 CAAAATGTCCACCAACTACTCCTAAACCCCCAAAAGTCCCTAAATCCCCAAAGAAGGATC 180
Query 194 CTGCCGTGAAACCCACTTGTCCTACCGACACACTTAAGCTTGGTGTTTGCGCAGACTTAT 253
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 CTGCCGTTAAACCCACTTGTCCTACCGACACACTTAAGCTCGGTGTTTGCGCAGACTTAT 240
Query 254 TGGGCCTAGTTAACGTTGTTGTTGGTTCTCCACCAAAGACTCCTTGTTGTACACTTCTTC 313
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGGCCTGGTTAACGTTGTTGTTGGTTCTCCACCAAAGACTCCTTGTTGTACACTTCTTC 300
Query 314 AAGGTCTTGCTAATCTTGAAGCTGCGGTTTGTCTCTGCACCGCTCTTAAAGCCAATGTCT 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGTCTTGCTAATCTTGAAGCTGCGGTTTGTCTCTGCACCGCTCTTAAAGCCAATGTCT 360
Query 374 TGGGGATTAATCTCAATGTTCCTATTGATCTAACCTTGCTGTTGAACTATTGTGGCAAGA 433
||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||||||
Sbjct 361 TGGGGATTAATCTCAATGTTCCTGTTGATCTGAGCTTGCTATTGAACTATTGTGGCAAGA 420
Query 434 AAGTTCCTCATGGTTTCCAATGTTCTTGAAGATTTGAGACTTTAAAAGAGAAAAATCTCT 493
|| ||||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 421 AACTTCCTTATGGTTTCCAATGTGCTTGACGATTTGAGACTT-AAAAGAGAAAAATCTCT 479
Query 494 TTGGTTTGCTATGTTTTTATATGTTTGTTTCTACTGTTATCTATTGTTTTTGTGAGAAAA 553
|| || || |||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TT--TT-GCAATGTTTTTATTTGTTTGTTTCTACTGGTATCTATTGTTTTTGTGAGAAAA 536
Query 554 AGC-TTTGTT-CTGTCACTGTTGAGTTTGATGTAATGCTTGAGC 595
| | |||||| || ||| | ||||||||||||||||||||||||
Sbjct 537 AACCTTTGTTTCTCTCA-TATTGAGTTTGATGTAATGCTTGAGC 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24894264801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5