BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45200.2
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935473 jgi|Araly1|935473|scaffold_403461.1 1077 0.0
> Ahg935473 jgi|Araly1|935473|scaffold_403461.1
Length=879
Score = 1077 bits (583), Expect = 0.0
Identities = 611/625 (98%), Gaps = 0/625 (0%)
Strand=Plus/Plus
Query 586 GGGTATGTTGACACTGGGTCTCCAACCGTTGGATCGGGGAGATCATGGAAGTCTATGGAG 645
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GGGTATGTTGACGCTGGGTCTCCAACCGTTGGATCGGGGAGATCATGGAAGTCTATGGAG 314
Query 646 ATGGAAATTCAATCGTTGCTTGAGAAGTTGTTGGATATTAATGATTCCATGAGTAGATGT 705
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 315 ATGGAAATTCAATCGTTGCTTGAGAAGTTGTTGGACATTAATGATTCCATGAGTAGATGT 374
Query 706 GCTGCATCTGCTGCACCCACAACATCGGTTACTCAAAAACTAGCAAGGCACAGGGATATA 765
|||||||||||||||||||| ||||||||||||||||| || || |||||||||||||||
Sbjct 375 GCTGCATCTGCTGCACCCACTACATCGGTTACTCAAAAGCTTGCTAGGCACAGGGATATA 434
Query 766 CTTCATGAATATACCCAGGAGTTTCGAAGAATAAAAGGAAATATAAACTCGTTGAGAGAA 825
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 435 CTTCATGAATATACCCAGGAGTTTCGAAGAATAAAAGGAAATATAAACTCGATGAGAGAA 494
Query 826 CACGCTGAGCTTCTGAGTTCTGTCAGGGATGACATAAGTGAATATAAGGCTTCTGGTAGT 885
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 CATGCTGAGCTTTTGAGTTCTGTCAGGGATGACATAAGTGAATATAAGGCTTCTGGTAGT 554
Query 886 ATGTCACCAGGTGTGCAAGTGTTAAGGGAGAGAGCTTCAATCCATGGAAGTATATCCCAT 945
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 555 ATGTCACCGGGTGTGCAAGTGTTAAGGGAGAGAGCTTCAATTCATGGAAGTATATCCCAT 614
Query 946 ATTGATGATGTGATTGGTCAAGCTCAAGCGACAAGAGCAGTTCTTGGCTCTCAACGATCT 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 ATTGATGATGTGATTGGTCAAGCTCAAGCGACAAGAGCAGTTCTTGGCTCTCAACGATCT 674
Query 1006 CTGTTTTCAGATGTTCAAGGGAAAGTAAAAAATCTCGGAGACAAATTCCCAGTGATTCGT 1065
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 CTATTTTCAGATGTTCAAGGGAAAGTAAAAAATCTCGGAGACAAATTCCCAGTGATTCGT 734
Query 1066 GGCTTACTTGGCTCAATTAAAAGGAAACGTTCTCGGGACACACTTATCCTCTCCGCTGTC 1125
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GGCTTACTTGGTTCAATTAAAAGGAAACGTTCTCGGGACACACTTATCCTCTCCGCTGTC 794
Query 1126 ATCGCTGCTTGTACGTTGTTTCTAATCATCTACTGGCTCTCAAAATAAACAGAATGTTCA 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ATCGCTGCTTGTACGTTGTTTCTAATCATCTACTGGCTCTCAAAATAAACAGAATGTTCA 854
Query 1186 TACACCTAAGCTATAAAACGAGTTT 1210
||||||||| |||||||||||||||
Sbjct 855 TACACCTAAACTATAAAACGAGTTT 879
Score = 422 bits (228), Expect = 4e-117
Identities = 242/249 (97%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 284 TTTCAGTGAGAATCAGATCGTCGTTGTACTGAGAGCTCCGGCATTGGTTCACGGCGGAGC 343
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 7 TTTCAGTTAGAATCAGATCGTCGTTGTACTGAGAGCTCCGGCATTGGTTCACGGCGAAGC 66
Query 344 TGGAGAGTTATCTAAGAACGGAGAGGTTACTGATCTGAATTGTTGAAGATCGGAAAATGA 403
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TGGCGAGTTATCTTAGAACGGAGAGGTTACTGATCTGAATTGTTGAAGATCGGAAAATGA 126
Query 404 CAGAATCGAGTCTGGATCTGCAGGAATCTGGTTGGGAAGAACTTAGGCGGGAAGCTCGTA 463
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 127 CAGAATCGAGTCTGGATCTGCAGGAATCTGGTTGGGAAGAACTGAGGCGGGAAGCTCGTA 186
Query 464 AAATTGAAGGAGATCTAGACGTTAAGCTCTCTTCTTACGCTAAGCTAGGCGCCAGGTTTA 523
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 187 AAATCGAAGGAGATCTAGACGTTAAGCTCTCTTCTTACGCTAAGCTCGGCGCCAGGTTTA 246
Query 524 CTCAAGGCG 532
|||||||||
Sbjct 247 CTCAAGGCG 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50322250440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5