BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G45210.1

Length=1139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935474 jgi|Araly1|935474|scaffold_403462.1                        791    0.0  


> Ahg935474 jgi|Araly1|935474|scaffold_403462.1
Length=529

 Score =  791 bits (428),  Expect = 0.0
 Identities = 497/529 (94%), Gaps = 9/529 (2%)
 Strand=Plus/Plus

Query  298  TTTAAAGTTAGCTATAAGAAGATGAGGAAGATCATAGGGTTTAGAATCGGGAGACGAGTC  357
            ||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1    TTT-AAGTTAGCTACAAGAAGATGAGGAAGATCATAGGGTTTAGAATCGGGAGAAGAGTC  59

Query  358  TCAAGATGGATCTTTCGCAAAACCCGGATCCAACGTTCAGGATACAACCGGATACACTCG  417
            |||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||
Sbjct  60   TCAAGATGGATCCTTCGGAAAACCCGGATCCGACGTTCTGGATACAACCGGATACACTCG  119

Query  418  ACCCAG-CAAGCTTGCATGCTGATGAGACCATTAGCCAAACTCAAAAGTTGGGGCCAACG  476
            |||| | |||||||||||||   ||||||||||  |||| ||||||||||||||||||||
Sbjct  120  ACCC-GACAAGCTTGCATGC---TGAGACCATTCTCCAAGCTCAAAAGTTGGGGCCAACG  175

Query  477  TCTCAAGCAAAGTTTCAGACG---CAGGTCTACGAGAAGATCCGCATACATACCCGTTGA  533
            |||||||||||||||||||||   |||||||| |||| |||||| |||||||||||||||
Sbjct  176  TCTCAAGCAAAGTTTCAGACGTTTCAGGTCTAGGAGAGGATCCGGATACATACCCGTTGA  235

Query  534  TCATAAGAAAGCCGACCCGGTTCCAAGGGGACACTTAGCTATCTACGTGGGTCAAAAAGA  593
            |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  236  TCATAAGAAACCCGACCCGGTTCCAAGGGGACACTTAGCGATCTACGTGGGTCAAAAAGA  295

Query  594  CGGCGACTGTCATAGAGTTTTGGTACCCATCGTTTACTTTAACCATCCTTTGTTCGGTGA  653
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  CGGTGACTGTCATAGAGTTTTGGTACCCATCGTTTACTTTAACCATCCTTTGTTCGGTGA  355

Query  654  GCTGCTTCGAGAAGCCGAAAAAGAGTACGGATTTTGCCACGAAGGAGGTATCACTATTCC  713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  356  GCTGCTTCGAGAAGCCGAAAAAGAGTACGGATTTTGCCACGAAGGAGGTATCACTATTCC  415

Query  714  TTGTCTGTATTCAGATTTCGAACGGGTCAAGACCCGGATCGCATCGGGGTCAAGTTCTCG  773
            |||| ||||||| || ||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct  416  TTGTTTGTATTCGGACTTCGAACAGGTCAAAACCCGGATCGCATCCGGGTCAAGTTCTCG  475

Query  774  GGTATTTCCATGGGGCCGTCATTGCCGCAATTGAAGACAATTATGGAAA  822
            | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  476  GATATTTCCATGGAGCCGTCATTGCCGCAATTGAAGACAATTATGGAAA  524



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42468929538


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5