BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45220.1
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902555 jgi|Araly1|902555|Al_scaffold_0004_3205 2564 0.0
Ahg949697 jgi|Araly1|949697|scaffold_801584.1 104 2e-21
> Ahg902555 jgi|Araly1|902555|Al_scaffold_0004_3205
Length=1536
Score = 2564 bits (1388), Expect = 0.0
Identities = 1487/1536 (97%), Gaps = 2/1536 (0%)
Strand=Plus/Plus
Query 54 ATGATGGCTTTTCGAGCTTATATTATTAACTTTGTGATCTTATGCATTCTCGTGGCATCG 113
|||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 1 ATGATGGCTTTTCGAGCTTATATTATTACCTTTGTGTTCTTATGCATCCTCGTGGCATCG 60
Query 114 ACCGTTTCCGGGTACAACCAGAAAGACGTGAAAGCATGGTGCAGCCAAACTCCAAACCCT 173
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 ACCGTTTCCGGGTACAACCAGAAAGACGTGAAAGCGTGGTGCAGCCAAACTCCAAACCCT 120
Query 174 AAACCTTGCGAGTATTTCTTAACCCATAACTCAAACAATGAACCCATAAAGTCTGAATCC 233
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AAACCTTGCGAGTATTTCTTAACCCATAACTCAAACAATAAACCCATAAAGTCTGAATCC 180
Query 234 GAGTTTCTCAAAATCTCAATGAAACTCGTATTAGACCGAGCCATCCTCGCCAAAACCCAC 293
||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 181 GAGTTCCTCGAAATCTCAATGAAACTCGCATTAGACCGAGCCGTCCTCGCCAAAATCCAC 240
Query 294 GCGTTCACACTAGGACCAAAGTGCCGTGACACACGTGAAAAAGCAGCGTGGGAAGATTGT 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCGTTCACACTAGGACCAAAGTGCCGTGACACACGTGAAAAAGCAGCGTGGGAAGATTGT 300
Query 354 ATCAAGCTCTACGACCTCACCGTCTCTAAAATCAACGAGACAATGGACCCAAACGTGAAG 413
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 ATCAAGCTCTATGACCTCACCGTCTCTAAAATCAACGAGACAATGGACCCCAACGTGAAG 360
Query 414 TGCTC-AAAACTCGACGCGCAAACATGGCTAAGCACGGCTCTAACCAATCTTGACACATG 472
||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 361 TGCTCAAAAACT-GACGCGCAAACATGGCTAAGCACAGCTCTAACCAATCTCGACACGTG 419
Query 473 TCGAGCTGGGTTCTTAGAGCTTGGTGTTACCGATATTGTCCTTCCTTTGATGTCAAACAA 532
|||||| |||||||||||||| || ||||||||| | |||||||||||||||||||||||
Sbjct 420 TCGAGCGGGGTTCTTAGAGCTCGGAGTTACCGATGTCGTCCTTCCTTTGATGTCAAACAA 479
Query 533 CGTCTCGAATCTTCTATGCAACACACTCGCCATTAACAAAGTTCCTTTCAACTACACCCC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGTCTCGAATCTTCTATGCAACACACTCGCCATTAACAAAGTTCCTTTCAACTACACCCC 539
Query 593 ACCCGAGAAAGACGGGTTCCCTTCGTGGGTCAAACCTGGTGACCGGAAACTTTTGCAAAG 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACCCGAGAAAGACGGGTTCCCTTCGTGGGTCAAACCTGGTGACCGGAAACTTTTGCAAAG 599
Query 653 CTCGACGCCAAAAGATAACGCAGTGGTGGCGAAAGACGGATCTGGCAATTTTAAGACGAT 712
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 600 CTCGACGCCAAAAGATAACGCAGTGGTGGCGAAAGACGGGTCTGGTAATTTCAAGACGAT 659
Query 713 AAAAGAAGCGATTGATGCTGCTTCGGGGAGTGGTAGGTTCGTTATATATGTGAAGCAAGG 772
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 AAAAGAAGCGATTGATGCTGCTTCGGGGAGTGGTAGGTTCGTGATATATGTGAAGCAAGG 719
Query 773 CGTTTACAGTGAGAACCTTGAGATTCGGAAAAAGAATGTCATGTTGAGAGGTGATGGTAT 832
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 720 CGTTTACAGTGAGAATCTTGAGATTCGAAAAAAGAATGTTATGTTGAGAGGTGATGGTAT 779
Query 833 AGGGAAGACGATTATTACCGGAAGCAAAAGTGTTGGAGGAGGAACGACAACCTTTAACTC 892
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 780 AGGGAAGACGATTATTACCGGAAGCAAAAGTGTTGGAGGAGGAACGACAACGTTTAATTC 839
Query 893 AGCTACTGTCGCGGCGGTCGGAGACGGGTTTATAGCTCGTGGGATCACGTTTCGAAACAC 952
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGCTACTGTCGCTGCGGTCGGAGACGGGTTTATAGCTCGTGGGATCACGTTTCGAAACAC 899
Query 953 GGCGGGTGCAAGCAACGAACAAGCGGTAGCTCTAAGATCCGGGTCGGATCTGTCAGTTTT 1012
||||||||||| ||||| ||||||||||||||||||||||||||||||||| || |||||
Sbjct 900 GGCGGGTGCAAACAACGCACAAGCGGTAGCTCTAAGATCCGGGTCGGATCTATCCGTTTT 959
Query 1013 TTACCAATGCAGTTTCGAAGCTTACCAAGACACACTCTACGTTCACTCCAACCGTCAGTT 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTACCAATGCAGTTTCGAAGCTTACCAAGACACACTCTACGTTCACTCCAACCGTCAGTT 1019
Query 1073 TTACCGCGATTGCGACGTTTATGGAACTGTCGATTTTATCTTCGGAAACGCAGCCGCGGT 1132
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 TTACCGCGATTGCGACGTTTATGGAACTGTCGATTTTATCTTCGGAAACGCAGCAGCGGT 1079
Query 1133 TCTCCAGAACTGCAACATTTTCGCACGTCGTCCTCGTAGTAAGACCAACACAATCACAGC 1192
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 TCTCCAGAACTGCAACATCTTCGCACGTCGTCCACGTAGTAAGACCAACACAATCACAGC 1139
Query 1193 TCAAGGAAGATCCGACCCGAATCAAAACACGGGGATTATTATCCACAACTCTCGGGTCAC 1252
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1140 TCAAGGAAGATCCGACCCGAATCAAAACACGGGTATTATTATCCACAACTCTCGGGTCAC 1199
Query 1253 GGCCGCTTCGGATCTTCGACCCGTTTTGGGATCCACAAAGACTTATTTGGGTAGACCTTG 1312
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1200 CGCCGCTTCGGATCTTCGACCCGTTTTGGGATCCACCAAGACTTATTTGGGTCGACCTTG 1259
Query 1313 GAGACAATATTCTAGGACGGTTTTTATGAAGACTTCTCTTGATAGTTTGATTGATCCACG 1372
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAGACAATATTCTAGAACAGTTTTTATGAAGACTTCTCTTGATAGTTTGATTGATCCACG 1319
Query 1373 TGGCTGGCTCGAGTGGGATGGTAATTTCGCTTTGAAGACTTTGTTCTATGCTGAGTTTCA 1432
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGGCTGGCTCGAGTGGGACGGTAATTTCGCTTTGAAGACTTTGTTCTATGCTGAGTTTCA 1379
Query 1433 AAATACGGGTCCGGGTGCTTCAACTTCGGGTCGGGTCACATGGCCAGGGTTTCGGGTCCT 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAATACGGGTCCGGGTGCTTCAACTTCGGGTCGGGTCACATGGCCAGGGTTTCGGGTCCT 1439
Query 1493 TGGTTCTGCTTCAGAGGCTTCCAAGTTTACTGTTGGTACTTTCCTCGCCGGTGGCTCTTG 1552
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1440 TGGTTCTGCTTCAGAGGCTTCCAAGTTTACTGTTGGTACTTTCCTTGCCGGTAGCTCTTG 1499
Query 1553 GATTCCATCTAGCGTGCCGTTCACTTCTGGTCTCTA 1588
||||||||||| ||||||||||||||||||||||||
Sbjct 1500 GATTCCATCTACCGTGCCGTTCACTTCTGGTCTCTA 1535
> Ahg949697 jgi|Araly1|949697|scaffold_801584.1
Length=714
Score = 104 bits (56), Expect = 2e-21
Identities = 121/152 (80%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 996 TCGGATCTGTCAGTTTTTTACCAATGCAGTTTCGAAGCTTACCAAGACACACTCTA-CGT 1054
||||| || ||| | || ||| ||||| |||||| |||||||||||||| | ||
Sbjct 88 TCGGACCTCTCAATCTTCTACAAATGCTCAATCGAAGGATACCAAGACACACT-GATGGT 146
Query 1055 TCACTC-CAACCGTCAGTTTTACCGCGATTGCGACGTTTATGGAACTGTCGATTTTATCT 1113
|| || ||| || ||||||||||| || ||| || |||| |||| ||||||||||||||
Sbjct 147 CCATTCGCAA-CGCCAGTTTTACCGTGAATGCTACATTTACGGAAGTGTCGATTTTATCT 205
Query 1114 TCGGAAACGCAGCCG-CGGTTCTCCAGAACTG 1144
||||||||||||||| || || |||| |||||
Sbjct 206 TCGGAAACGCAGCCGTCGTTT-TCCAAAACTG 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67038831200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5