BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45240.1 Length=1488 Score E Sequences producing significant alignments: (Bits) Value Ahg935477 jgi|Araly1|935477|scaffold_403465.1 2045 0.0 > Ahg935477 jgi|Araly1|935477|scaffold_403465.1 Length=1248 Score = 2045 bits (1107), Expect = 0.0 Identities = 1192/1232 (97%), Gaps = 9/1232 (1%) Strand=Plus/Plus Query 115 AATTGAATGGCCAGTGAAT---CAGATGCATCGAGCATTGCTACTCTTTCCTGTGCTCGC 171 |||||||||||| |||||| |||||||||| | |||||| |||||||||||||||||| Sbjct 17 AATTGAATGGCCGGTGAATCAGCAGATGCATCCACCATTGCGACTCTTTCCTGTGCTCGC 76 Query 172 TGCGAGAAGCCTGCACATCTTCAGTGTCCGAAATGCATAGACTTAAAGCTTCCTCGTGAA 231 |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 77 TGCGAGAAGCCTGCGCATCTTCAGTGTCCGAAATGCATGGACTTGAAGCTTCCTCGTGAA 136 Query 232 CAAGCCTCTTTCTGCACTCAAGAATGTTTCAAGGCAGCTTGGAGCTCGCACAAATCAGTA 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 CAAGCCTCTTTCTGCACTCAAGAATGTTTCAAGGCAGCTTGGAGCTCGCACAAATCAGTA 196 Query 292 CATGTGAAAGCTCAGCTGTCTTCAA-T-----CGGTGATCAGAACTCTGATCTTATTTCT 345 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 197 CATGTGAAAGCTCAGCTGTCTTCAATTGCCACCGGTGATCAGAACTCTGATCTTATTTCT 256 Query 346 CAAGGCTGGCTCTATTGCGTCAAGAAAGGCCAGGCTAGAACACCTAAGCTTCCACACTTT 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 257 CAAGGCTGGCTCTATTGCGTCAAGAAAGGCCAGGCTAGAACACCTAAGCTTCCACACTTT 316 Query 406 GATTGGACTGGGCCTCTAAAGCAATATCCCATATCTACCAAGCGTGTTGTGCCTGCTGAG 465 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 GATTGGACTGGGCCCCTAAAGCAATATCCCATATCTACCAAGCGTGTTGTGCCTGCTGAG 376 Query 466 ATTGAGAAACCTGACTGGGCAATTGATGGGACTCCCAAAGTTGAACCGAATAGTGATCTA 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 377 ATTGAGAAACCTGACTGGGCAATTGATGGGACTCCCAAAGTTGAACCGAATAGTGATCTA 436 Query 526 CAACATGTTGTTGAGATAAAAACGCCTGAACAAATCCAGAGAATGCGTGAAACCTGTAAA 585 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 437 CAACATGTTGTTGAGATAAAAACCCCCGAACAAATCCAGAGAATGCGTGAAACCTGTAAA 496 Query 586 ATTGCCAGAGAGGTCCTGGATGCAGCCGCTAGGGTGATTCACCCCGGTGTGACTACTGAT 645 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 497 ATTGCCAGAGAGGTCCTGGATGCAGCCGCTAGGGTGATTCGCCCCGGTGTGACTACTGAT 556 Query 646 GAGATTGATCGAGTAGTTCATGAAGCAACTATTGCAGCAGGAGGATATCCATCGCCCCTC 705 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 557 GAGATTGATCGAGTAGTTCATGAAGCAACTGTTGCAGCAGGAGGATATCCATCGCCCCTC 616 Query 706 AACTACTATTTCTTTCCGAAATCTTGCTGCACATCTGTTAATGAAGTAATTTGTCATGGA 765 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 617 AACTACTATTTCTTTCCCAAATCTTGCTGCACATCTGTTAATGAAGTAATTTGTCATGGA 676 Query 766 ATTCCGGATGCTAGGAAACTAGAAGATGGTGATATAGTAAATGTGGATGTAACAGTCTGT 825 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 677 ATTCCGGATGCTAGAAAACTAGAAGATGGTGATATAGTAAATGTTGATGTAACAGTCTGT 736 Query 826 TATAAAGGTTGCCATGGTGACCTTAATGAGACATACTTTGTTGGAAACGTTGACGAAGCA 885 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 737 TATAAAGGTTGCCATGGTGACCTTAATGAGACATACTTTGTTGGAAATGTTGACGAAGCA 796 Query 886 TCACGTCAACTGGTTAAGTGCACATACGAGTGCCTGGAGAAAGCTATAGCAATTGTTAAA 945 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 797 TCACGTCAACTGGTTAAGTGCACGTACGAGTGCCTGGAGAAAGCCATAGCAATTGTTAAA 856 Query 946 CCTGGAGTAAGATTTCGTGAAATTGGAGAGATAGTCAACCGCCATGCTACAATGTCTGGG 1005 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 857 CCTGGAGTAAGATTTCGTGAAATCGGAGAGATAGTCAATCGCCATGCTACAATGTCTGGG 916 Query 1006 TTATCAGTGGTGAGATCTTATTGTGGTCATGGTATTGGAGATCTCTTCCATTGTGCTCCA 1065 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 917 TTATCAGTGGTGAGATCCTATTGTGGTCATGGTATTGGAGATCTCTTCCATTGTGCCCCA 976 Query 1066 AACATTCCTCACTATGCAAGAAACAAAGCAGTTGGAGTGATGAAAGCAGGTCAGACTTTC 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 977 AACATTCCTCACTATGCAAGAAACAAAGCAGTTGGAGTGATGAAAGCAGGTCAGACTTTC 1036 Query 1126 ACAATCGAGCCAATGATCAACGCAGGGGGGTGGAGGGATCGAACATGGCCTGATGGATGG 1185 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 1037 ACAATCGAGCCAATGATCAACGCAGGGACATGGCGGGATCGAACATGGCCTGATGGATGG 1096 Query 1186 ACTGCAGTTACCGCAGATGGAAAACGCAGCGCTCAGTTTGAGCATACCCTATTGGTAACG 1245 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1097 ACTGCAGTTACCGCAGATGGAAAACGCAGCGCTCAGTTTGAGCATACCCTCTTGGTAACG 1156 Query 1246 GAGACTGGTGTTGAGGTTTTAACAGCGAGGCTTCCTTCATCGCCTGACGTATATCCTTGG 1305 ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct 1157 GAGACTGGTGTTGAGGTTTTAACAGCGAGGCTTCCGTCATCACCTGACGTATACCCTTGG 1216 Query 1306 CTTACCAAGTGATTAAGTGTTTGGTTCCTTTT 1337 |||||||||||||||||||| ||||||||||| Sbjct 1217 CTTACCAAGTGATTAAGTGTATGGTTCCTTTT 1248 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55687938190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5