BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45240.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935477 jgi|Araly1|935477|scaffold_403465.1 2045 0.0
> Ahg935477 jgi|Araly1|935477|scaffold_403465.1
Length=1248
Score = 2045 bits (1107), Expect = 0.0
Identities = 1192/1232 (97%), Gaps = 9/1232 (1%)
Strand=Plus/Plus
Query 115 AATTGAATGGCCAGTGAAT---CAGATGCATCGAGCATTGCTACTCTTTCCTGTGCTCGC 171
|||||||||||| |||||| |||||||||| | |||||| ||||||||||||||||||
Sbjct 17 AATTGAATGGCCGGTGAATCAGCAGATGCATCCACCATTGCGACTCTTTCCTGTGCTCGC 76
Query 172 TGCGAGAAGCCTGCACATCTTCAGTGTCCGAAATGCATAGACTTAAAGCTTCCTCGTGAA 231
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 77 TGCGAGAAGCCTGCGCATCTTCAGTGTCCGAAATGCATGGACTTGAAGCTTCCTCGTGAA 136
Query 232 CAAGCCTCTTTCTGCACTCAAGAATGTTTCAAGGCAGCTTGGAGCTCGCACAAATCAGTA 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 CAAGCCTCTTTCTGCACTCAAGAATGTTTCAAGGCAGCTTGGAGCTCGCACAAATCAGTA 196
Query 292 CATGTGAAAGCTCAGCTGTCTTCAA-T-----CGGTGATCAGAACTCTGATCTTATTTCT 345
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 197 CATGTGAAAGCTCAGCTGTCTTCAATTGCCACCGGTGATCAGAACTCTGATCTTATTTCT 256
Query 346 CAAGGCTGGCTCTATTGCGTCAAGAAAGGCCAGGCTAGAACACCTAAGCTTCCACACTTT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CAAGGCTGGCTCTATTGCGTCAAGAAAGGCCAGGCTAGAACACCTAAGCTTCCACACTTT 316
Query 406 GATTGGACTGGGCCTCTAAAGCAATATCCCATATCTACCAAGCGTGTTGTGCCTGCTGAG 465
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GATTGGACTGGGCCCCTAAAGCAATATCCCATATCTACCAAGCGTGTTGTGCCTGCTGAG 376
Query 466 ATTGAGAAACCTGACTGGGCAATTGATGGGACTCCCAAAGTTGAACCGAATAGTGATCTA 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 ATTGAGAAACCTGACTGGGCAATTGATGGGACTCCCAAAGTTGAACCGAATAGTGATCTA 436
Query 526 CAACATGTTGTTGAGATAAAAACGCCTGAACAAATCCAGAGAATGCGTGAAACCTGTAAA 585
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 437 CAACATGTTGTTGAGATAAAAACCCCCGAACAAATCCAGAGAATGCGTGAAACCTGTAAA 496
Query 586 ATTGCCAGAGAGGTCCTGGATGCAGCCGCTAGGGTGATTCACCCCGGTGTGACTACTGAT 645
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 497 ATTGCCAGAGAGGTCCTGGATGCAGCCGCTAGGGTGATTCGCCCCGGTGTGACTACTGAT 556
Query 646 GAGATTGATCGAGTAGTTCATGAAGCAACTATTGCAGCAGGAGGATATCCATCGCCCCTC 705
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 557 GAGATTGATCGAGTAGTTCATGAAGCAACTGTTGCAGCAGGAGGATATCCATCGCCCCTC 616
Query 706 AACTACTATTTCTTTCCGAAATCTTGCTGCACATCTGTTAATGAAGTAATTTGTCATGGA 765
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 AACTACTATTTCTTTCCCAAATCTTGCTGCACATCTGTTAATGAAGTAATTTGTCATGGA 676
Query 766 ATTCCGGATGCTAGGAAACTAGAAGATGGTGATATAGTAAATGTGGATGTAACAGTCTGT 825
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 677 ATTCCGGATGCTAGAAAACTAGAAGATGGTGATATAGTAAATGTTGATGTAACAGTCTGT 736
Query 826 TATAAAGGTTGCCATGGTGACCTTAATGAGACATACTTTGTTGGAAACGTTGACGAAGCA 885
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 737 TATAAAGGTTGCCATGGTGACCTTAATGAGACATACTTTGTTGGAAATGTTGACGAAGCA 796
Query 886 TCACGTCAACTGGTTAAGTGCACATACGAGTGCCTGGAGAAAGCTATAGCAATTGTTAAA 945
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 797 TCACGTCAACTGGTTAAGTGCACGTACGAGTGCCTGGAGAAAGCCATAGCAATTGTTAAA 856
Query 946 CCTGGAGTAAGATTTCGTGAAATTGGAGAGATAGTCAACCGCCATGCTACAATGTCTGGG 1005
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 857 CCTGGAGTAAGATTTCGTGAAATCGGAGAGATAGTCAATCGCCATGCTACAATGTCTGGG 916
Query 1006 TTATCAGTGGTGAGATCTTATTGTGGTCATGGTATTGGAGATCTCTTCCATTGTGCTCCA 1065
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 917 TTATCAGTGGTGAGATCCTATTGTGGTCATGGTATTGGAGATCTCTTCCATTGTGCCCCA 976
Query 1066 AACATTCCTCACTATGCAAGAAACAAAGCAGTTGGAGTGATGAAAGCAGGTCAGACTTTC 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 AACATTCCTCACTATGCAAGAAACAAAGCAGTTGGAGTGATGAAAGCAGGTCAGACTTTC 1036
Query 1126 ACAATCGAGCCAATGATCAACGCAGGGGGGTGGAGGGATCGAACATGGCCTGATGGATGG 1185
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1037 ACAATCGAGCCAATGATCAACGCAGGGACATGGCGGGATCGAACATGGCCTGATGGATGG 1096
Query 1186 ACTGCAGTTACCGCAGATGGAAAACGCAGCGCTCAGTTTGAGCATACCCTATTGGTAACG 1245
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1097 ACTGCAGTTACCGCAGATGGAAAACGCAGCGCTCAGTTTGAGCATACCCTCTTGGTAACG 1156
Query 1246 GAGACTGGTGTTGAGGTTTTAACAGCGAGGCTTCCTTCATCGCCTGACGTATATCCTTGG 1305
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1157 GAGACTGGTGTTGAGGTTTTAACAGCGAGGCTTCCGTCATCACCTGACGTATACCCTTGG 1216
Query 1306 CTTACCAAGTGATTAAGTGTTTGGTTCCTTTT 1337
|||||||||||||||||||| |||||||||||
Sbjct 1217 CTTACCAAGTGATTAAGTGTATGGTTCCTTTT 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5