BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45260.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483660 jgi|Araly1|483660|fgenesh2_kg.4__2720__AT4G34080.1 1757 0.0
> Ahg483660 jgi|Araly1|483660|fgenesh2_kg.4__2720__AT4G34080.1
Length=1083
Score = 1757 bits (951), Expect = 0.0
Identities = 1040/1084 (96%), Gaps = 2/1084 (0%)
Strand=Plus/Plus
Query 275 GAAGAGTCTATCAATCAGAATCCTGAAGCTATGGAAGCACTTATCTCCAATCTCTTCGGA 334
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1 GAAGAATCTATCAATCAGAATCCTGAAGCTATGGAAGCACTTATTTCCAATCTCTTTGGA 60
Query 335 AACATCTCGTCTTTGAAATCTGCTTATATCGAGCTTCAAAGTGCTCATACTCCTTACGAT 394
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACATCTCCTCTTTGAAATCTGCTTATATCGAGCTTCAAAGTGCTCATACTCCTTACGAC 120
Query 395 CCCGAGAAGATTCAGGCAGCGGACAAAGTTGTCATTTCTGAACTCAAGAATCTTTCCGAA 454
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 121 CCCGAGAAGATTCAGGCAGCGGATAAAGTTGTGATTTCTGAACTCAAGAATCTTTCGGAA 180
Query 455 ATGAAGCATTTTTACAGAGAGAATAACCCCAAACCTGTATGTGTCTCTCCACAAGACTCT 514
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTGAAGCATTTTTACAGAGAGAATAACCCCAAGCCTGTATGTGTCTCTCCACAAGACTCT 240
Query 515 CGTTTAGCTGCAGAGATCCAAGAGCAGCAGAGTTTGTTGAAGACTTATGAGGTTATGGTG 574
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 241 CGTTTAGCTGCAGAGATCCAAGAACAGCAGAGTTTGTTGAAGACTTATGAGGTCATGGTG 300
Query 575 AAGAAGTTTCAGTCTGAGATTCAGAACAAGGATTCTGAGATCACGCAGATGCTACAGAAG 634
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 301 AAGAAGTTTCAGTCTGAGATTCAGAACAAGGATTCCGAGATCACGCAGATGCTGCAGAAG 360
Query 635 ATTGAGGAAGCAAACCAGAAACGGCTTAAGCTTGAGAAGAATCTTAAGTTAAGAGGAATG 694
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 ATCGACGAAGCAAACCAGAAACGGCTTAAGCTTGAGAAGAATCTTAAGTTAAGGGGAATG 420
Query 695 TCTACAAACGAAGGTTCTAATGGAGATGGAAATATGCAGTTTCCTGACTTAACTACTGAA 754
||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 421 TCTACAAACGAAGGTTCTAATGGAGATGGCAATTTGCAATTTCCTGACTTAACTACTGAA 480
Query 755 CTCTAT-GTATCTACTTACGAAGCTGCTGCTAAAGCCGTGCACGATTTCTCCAAGCCGCT 813
|||| | |||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 481 CTCT-TCATATCTAGTTACGAAGCTGCTGCTAAAGCTGTGCACGATTTCTCCAAGCCGCT 539
Query 814 AATCAACATGATGAAAGCAGCAGGATGGGATCTTGATTCTGCAGCCAATTCTATTGAGCC 873
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 AATCAACATGATGAAAGCTGCAGGATGGGATCTTGATTCTGCAGCCAATTCCATTGAGCC 599
Query 874 TGATGTTGTTTACGCCAAGAGGCCTCACAAGAAATATGCATTTGAATCATACATATGCCA 933
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGACGTTGTTTACGCCAAGAGGCCTCACAAGAAATATGCATTTGAATCATACATATGCCA 659
Query 934 AAGGATGTTCAGTGGGTTTCAGCAGAAGAACTTCTCAGTAAACTCAGAGAGTGCTGCGGT 993
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 660 AAGGATGTTCAGTGGGTTTCAGCAGAAGAATTTCTCAGTAAACTCAGAGAGTGCAACGGT 719
Query 994 TATGGCCAATGATGACACAGACACCTTTTTCCGCCAGTTTCTTGCTCTCAAGGACATGGA 1053
||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 TATAGCCGATGATGACACAGACACCTTTTTCCGCCAGTTTCTTGCTCTGAAGGACATGGA 779
Query 1054 TCCACTAGATGCTCTAGGTACAAACCCTGATTCCAACTTTGGTATATTCTGCAGGAGCAA 1113
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 TCCACTAGATGCTCTAGGTACAAACCCTGATTCCAACTTTGGCATATTCTGCAGGAGCAA 839
Query 1114 GTATCTCCTCTTGGTCCACCCAAAGATGGAAGCTTCTTTCTTTGGAAATCTAGATCAGCG 1173
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 GTATCTCATCTTGGTCCACCCAAAGATGGAAGCTTCTTTCTTTGGAAATCTAGACCAGCG 899
Query 1174 TGACTACGTGACAGGAGGTGGGCACCCGAGGACTGCGTTTTACCAGGCCTTCTTAAAACT 1233
||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 900 TGACTACGTAACAGGAGGTGGGCACCCGAGGACTACATTTTACCAGGCCTTCTTAAAACT 959
Query 1234 TGCAAAGTCGATATGGATCTTGCACAGGCTTGCTTACTCTTTTGATCCAGCTGCAAAGAT 1293
|||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 960 TGCAAAGTCGGTATGGATCTTGCACAGGCTTGCATACTCGTTTGATCCAGCTGCTAAGAT 1019
Query 1294 CTTCCAAGTGAAAAAGGGTAGTGAGTTCTCTGATTCATACATGGAAAGTGTTGTGAAGAA 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTTCCAAGTGAAAAAGGGTAGTGAGTTCTCTGATTCATACATGGAAAGTGTTGTGAAGAA 1079
Query 1354 CATA 1357
||||
Sbjct 1080 CATA 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5