BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45290.1
Length=2598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486548 jgi|Araly1|486548|fgenesh2_kg.5__2540__AT3G60750.1 2278 0.0
Ahg943752 jgi|Araly1|943752|scaffold_604296.1 1386 0.0
Ahg927965 jgi|Araly1|927965|scaffold_300422.1 248 1e-64
> Ahg486548 jgi|Araly1|486548|fgenesh2_kg.5__2540__AT3G60750.1
Length=2844
Score = 2278 bits (1233), Expect = 0.0
Identities = 1913/2241 (85%), Gaps = 48/2241 (2%)
Strand=Plus/Plus
Query 56 ATGGCTTCTACTTCTTCTCTAGCGCTCTCACAAGCTCTCCTTA-CACGAGCCATCTCTCA 114
||||||||||||||||| || || ||||| |||||||||| || | || || ||||||||
Sbjct 287 ATGGCTTCTACTTCTTCCCTCGCTCTCTCTCAAGCTCTCC-TAGCTCGTGCAATCTCTCA 345
Query 115 CAATGGCTCTGA-AAACTGCGTCTCTATACCAGCTTTCTCTGCTCTCAAATCCACTTCTC 173
| |||||||||| ||| | | ||| ||||||||||||||| ||||||||||| |
Sbjct 346 CCATGGCTCTGACCAAC-GTGGATCTTTACCAGCTTTCTCTGGACTCAAATCCACCGGTT 404
Query 174 CACGCACCAGTGGCACCATCTCTTCCCGTCGACGAAACGC-C--TCCACGATCAGTCA-C 229
|||| || | | | | || || |||||||| | ||| | |||| || || | |
Sbjct 405 CACGTGCC--T--CTGC-T-TCGTCTCGTCGACGTATCGCTCAATCCATGAACAAAAACC 458
Query 230 --TCTCTCCGCCCTCTGGTTCGTGCAGCCGCCGTAGAGGCAATCGTGACAAGTTCTGATT 287
|||||||| ||||| ||||| || || || || ||| | | | | ||| ||||||
Sbjct 459 GTTCTCTCCGTCCTCTTGTTCGCGCTGCAGCTGTTGAGACTGTTGAGCCAACCACTGATT 518
Query 288 CGTCCCTGGTTGATAAGTCGGTGAACACGATCAGGTTTCTGGCAATAGATGCGGTTGAGA 347
|||| | ||||| || ||||| ||| |||| |||||| |||| || |||||||| ||||
Sbjct 519 CGTCGATTGTTGACAAATCGGTCAACTCGATTAGGTTTTTGGCTATCGATGCGGTGGAGA 578
Query 348 AGGCGAAATCAGGTCATCCAGGTCTTCCTATGGGCTGTGCTCCGATGTCTCACATTTTGT 407
||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct 579 AGGCGAACTCAGGTCATCCTGGTCTTCCTATGGGTTGTGCTCCGATGGCTCACATTTTGT 638
Query 408 ACGATGAAGTCATGAAGTATAACCCCAAGAATCCTTACTGGTTTAACCGTGATCGTTTCG 467
| ||||| ||||||| ||||||||||||||| ||||| ||||| |||||||| || ||||
Sbjct 639 ATGATGAGGTCATGAGGTATAACCCCAAGAACCCTTATTGGTTCAACCGTGACCGATTCG 698
Query 468 TTCTCTCTGCTGGACATGGATGCATGTTGCAATACGC-TCTGCTTCACCTTGCTGGCTAC 526
|||| ||||||||||||||||| ||||||| ||||| | ||||||| ||||||||||||
Sbjct 699 TTCTATCTGCTGGACATGGATGTATGTTGCTTTACGCGT-TGCTTCATCTTGCTGGCTAC 757
Query 527 GACAGCGT-TAGGGAGGAAGATTTGAAG-AGCTTCCGTCAATGGGGAAGTAAGACTCCAG 584
||||| || | |||||||||||||||| || ||||||||||||||||| ||||| ||||
Sbjct 758 GACAGTGTCCA-GGAGGAAGATTTGAAGCAG-TTCCGTCAATGGGGAAGCAAGACACCAG 815
Query 585 GACATCCTGAGAATTTTGAGACTCCTGGTGTTGAAGCCACTACTGGTCCTCTTGGACAAG 644
|||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||
Sbjct 816 GACATCCTGAGAATTTCGAGACTCCTGGAATTGAAGTCACTACTGGTCCTCTTGGACAAG 875
Query 645 GTATTGCAAATGCTGTTGGTTTAGCTCTTGCGGAGAAGCATTTGGCTGCTAGATTTAACA 704
| || || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 876 GAATCGCTAATGCTGTTGGTTTAGCTCTTGCTGAGAAGCATTTGGCTGCTAGATTCAACA 935
Query 705 AACCTGACAATG-AGATTGTTGACCACTACACGTATTCGATTCTTGGAGATGGTTGTCAG 763
||||||| || || |||| ||||||||||| ||| |||| ||||||||||||||||||
Sbjct 936 AACCTGATGCTGAAG-TTGTCGACCACTACACATATGCGATCCTTGGAGATGGTTGTCAG 994
Query 764 ATGGAAGGG-ATTTCAAATGAAGTTTGCTCTCTAGCTGGTCACTGGGGACTTGGAAAGCT 822
|||| |||| ||||| ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 995 ATGG-AGGGTATTTCTAATGAAGCTTGCTCTCTAGCTGGCCACTGGGGACTTGGAAAGCT 1053
Query 823 AATCGCTTTCTACGATGACAATCACATTTCCATTGATGGAGACACAGATATTGCTTTTAC 882
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1054 CATTGCTTTCTACGATGACAATCACATTTCCATTGATGGAGACACAGAAATTGCCTTCAC 1113
Query 883 CGAGAGCGTGGACAAACGCTTT-GAAGCTCTTGGATGGCATGTTATCTGGGTAAAGAATG 941
|||| ||||||| | || ||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1114 TGAGAACGTGGACCAGCG-TTTCGAAGCCCTTGGATGGCATGTTATCTGGGTGAAGAATG 1172
Query 942 GAAACAATGGTTATGATGAGATCCGTGCTGCCATTAGGGAAGCTAAGGCTGTAACAGACA 1001
|||||| ||| ||||| ||||||||||||||||||| ||||||||| ||||| |||||||
Sbjct 1173 GAAACACTGGGTATGACGAGATCCGTGCTGCCATTAAGGAAGCTAAAGCTGTTACAGACA 1232
Query 1002 AGCCCACTTTGATTAAGGTCACTACTACAATTGGTTATGGTTCTCCCAACAAGGCAAACT 1061
|||| || ||||| |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 1233 AGCCTACATTGATCAAGGTCACTACTACCATTGGTTATGGGTCTCCCAACAAGGCGAACT 1292
Query 1062 CATACAGTGTCCATGGAGCTGCGCTTGGTGAGAAGGAAGTTGAGGCTACCCGAAACAATC 1121
|||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||| || |
Sbjct 1293 CATACAGTGTCCATGGTGCTGCACTTGGCGAGAAGGAAGTTGAGGCTACCAGAAATAACC 1352
Query 1122 TTGGGTGGCCATATGAGCCGTTCCATGTACCTGAGGATGTCAAAAGCCATTGGAGCCGTC 1181
|||| ||||| |||||||| ||||| |||||||| ||||| |||||||| ||||| ||||
Sbjct 1353 TTGGATGGCCGTATGAGCCTTTCCAGGTACCTGACGATGTTAAAAGCCACTGGAGTCGTC 1412
Query 1182 ACACGCCCGAAGGGGCTGCTCTTGAAGCTGATTGGAATGCCAAA-TTTGCAGCTTATGAG 1240
| || || ||||| ||| |||||||| |||| |||| ||| ||| |||||||| |||||
Sbjct 1413 ATACACCTGAAGGAGCTACTCTTGAATCTGACTGGAGTGC-AAAGTTTGCAGCATATGAA 1471
Query 1241 AAGAAATATCCGGAGGAAGCTGCAGAGTTGAAATCTATTATCTCAGGTGAATTGCCCGTT 1300
||||| || || ||||||||||| |||||||||||||||||| | |||||||| || | |
Sbjct 1472 AAGAAGTACCCAGAGGAAGCTGCTGAGTTGAAATCTATTATCACGGGTGAATTACCTGCT 1531
Query 1301 GGTTGGGAGAAGGCACTTCCTACATATACACCAGACTCTCCGGGTGATGCCACCAGAAAC 1360
|| ||||||||||| || |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1532 GGCTGGGAGAAGGCTCTACCTACATACACACCAGAGTCTCCAGGTGATGCCACCAGAAAC 1591
Query 1361 CTGTCTCAGCAATGTCTTAACGCACTTGCGAAAGCTGTGCCTGGTTTTCTTGGTGGGAGT 1420
||||| ||||||||||||||||| ||||| |||| ||| || ||||| |||||||| |||
Sbjct 1592 CTGTCACAGCAATGTCTTAACGCCCTTGCTAAAGTTGTTCCCGGTTTCCTTGGTGGAAGT 1651
Query 1421 GCTGACCTTGCATCTTCCAACATGACAATGCTTAAAGCATTCGGCAACTTCCAAAAAGCC 1480
|||||||||||||| |||||||||||| |||| ||||| || ||| |||||||||| |||
Sbjct 1652 GCTGACCTTGCATCATCCAACATGACATTGCTGAAAGCCTTTGGCGACTTCCAAAAGGCC 1711
Query 1481 ACACCTGAAGAAAGAAACCTTAGATTTGGTGTCAGGGAACATGGTATGGGAGCTATCTGC 1540
||||||||||||||||| ||||| |||||||| ||||| || || |||||||| ||| ||
Sbjct 1712 ACACCTGAAGAAAGAAATCTTAGGTTTGGTGTTAGGGAGCACGGAATGGGAGCCATCAGC 1771
Query 1541 AACGGCATTGCCCTTCACAGCCCCGGTTTTATCCCTTACTGCGCAACTTTCTTTGTGTTT 1600
||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||| ||
Sbjct 1772 AACGGCATTGCCCTTCACAGCCCTGGTCTTATCCCTTACTGTGCGACTTTCTTTGTCTTC 1831
Query 1601 ACTGACTATATGAGAGCTGCAATGAGAATCTCGGCTTTGTCTGAAGCTGGTGTTATATAC 1660
|||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1832 ACTGACTACATGAGAGGTGCCATGAGAATCTCGGCTTTGTCTGAAGCTGGTGTTATCTAT 1891
Query 1661 GTTATGACCCATGACTCCATTGGTCTTGGAGAAGATGGACCAACCCACCAACCCATCGAA 1720
||||||||||||||||| ||||||||||| || |||||||||||||| || ||||| ||
Sbjct 1892 GTTATGACCCATGACTCTATTGGTCTTGGTGAGGATGGACCAACCCATCAGCCCATTGAG 1951
Query 1721 CACTTATC-CA-GTTTCCGTGCCATGCCCAATATTATGATGTTCCGTCCAGCTGATGGGA 1778
||| ||| || |||||||||| |||||||| | | | ||||||||||| || ||||| |
Sbjct 1952 CAC--ATCGCAAGTTTCCGTGCTATGCCCAACACTCTTATGTTCCGTCCTGCGGATGGAA 2009
Query 1779 ACGAAACAGCCGGTGCATACAAAATCGCTGTCACAAAACGTAAGACACCTTCTGTCTTAG 1838
|||||||||| ||||||||||| ||||||||||| ||||| ||||| || ||| ||||||
Sbjct 2010 ACGAAACAGCGGGTGCATACAAGATCGCTGTCACCAAACGAAAGACCCCATCTATCTTAG 2069
Query 1839 C-CTTATCTAGACAAAAGCTGCCTCAACTTCCAGGAACATCTATTGAGAGC-GTCGAGAA 1896
| || ||||| |||||||||||||| |||||||| ||||| ||||| || ||||| ||
Sbjct 2070 CTCTG-TCTAGGCAAAAGCTGCCTCAGCTTCCAGGTACATCCATTGA-AGGAGTCGA-AA 2126
Query 1897 AGG-TGGATACACCATTTCTGACAACTCAACCGGTAACAAACCCGATGTGATCTTGATCG 1955
||| |||||| || ||||||||| |||| | || ||||||||||||||||||||||| |
Sbjct 2127 AGGGTGGATATACAATTTCTGACGACTCTTCAGGCAACAAACCCGATGTGATCTTGATTG 2186
Query 1956 GAACTGGATCAGAGCTAGAGATTGCTGCTCAAGCTGCAGAGAAGTTAAGGGAACAAGGCA 2015
|||||||||| ||||||||||||||||| || ||||||||| | | ||| || ||||||
Sbjct 2187 GAACTGGATCTGAGCTAGAGATTGCTGCACAGGCTGCAGAGGTGCTGAGGAAAGAAGGCA 2246
Query 2016 AAAGTGTGAGAGTTGTTTCCTTT-GTATGTTGGGAGCT-TTTCGACGAGCAATCAGATGC 2073
||| || ||||||||||| ||| || || ||||| || ||| |||||||| |||||||
Sbjct 2247 AAACCGTTAGAGTTGTTTC-TTTCGTGTGCTGGGAACTATTT-GACGAGCAGTCAGATGA 2304
Query 2074 ATACAAGGAAAGTGTTTTGCCATCTGATGTATCAGCTAGAGTTAGTATCGAAGCTGGATC 2133
||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 2305 ATACAAGGAGAGTGTGTTGCCATCTGATGTATCAGCTAGAGTCAGTATCGAAGCAGCTTC 2364
Query 2134 GACTTTTGGATGGGGAAAGATCGTCGGAGGAAAAGGGAAA-TCGATTGGAATTGATACGT 2192
|||||| |||||||||||||| || ||||| ||||| ||| || ||||| ||| || | |
Sbjct 2365 GACTTTCGGATGGGGAAAGATTGTTGGAGGCAAAGG-AAAGTCCATTGGTATTAATTCAT 2423
Query 2193 TTGGAGCAAGTGCACCAGCAGGAA-AGCTTTATAAAGAGTTTGGTATCACCATTGAAGCT 2251
| || || || ||||||||| | || || || ||||||||||||||| ||||||||
Sbjct 2424 TCGGGGCCAGCGCACCAGCACCCTTA-CTCTACAAGGAGTTTGGTATCACCGTTGAAGCT 2482
Query 2252 ATGGTTGAAGCAGCCAAGTCA 2272
| ||||| || |||||||||
Sbjct 2483 GTTGTTGATGCGGCCAAGTCA 2503
> Ahg943752 jgi|Araly1|943752|scaffold_604296.1
Length=2245
Score = 1386 bits (750), Expect = 0.0
Identities = 1566/1958 (80%), Gaps = 63/1958 (3%)
Strand=Plus/Plus
Query 289 GTCCCTGGTTGATAAGTCGGTGAACACGATCAGGTTTCTGGCAATAGATGCGGTTGAGAA 348
||| ||||| || || ||||| || ||||||||||| ||||| || |||||||| |||||
Sbjct 233 GTCTCTGGTAGACAAATCGGTCAATACGATCAGGTTCCTGGCGATCGATGCGGTCGAGAA 292
Query 349 GGCGAAATCAGGTCATCCAGGTCTTCCTATGGGCTGTGCTCCGAT-GTCTCACATTTTGT 407
|| ||||| ||||| || || || |||||||| ||||| || || | | || || ||||
Sbjct 293 AGCCAAATCGGGTCACCCGGGACTGCCTATGGGATGTGCCCCAATGGGC-CATATATTGT 351
Query 408 ACGATGAAGTCATG-AAGTATAACCCCAAGAATCCTTACTGGTTTAACCGTGATCGTTTC 466
||| ||||| ||| || || ||||| ||||| |||| |||||| ||| | |||||||||
Sbjct 352 TCGACGAAGTGATGCAA-TACAACCCAAAGAACCCTTTCTGGTTCAACAGAGATCGTTTC 410
Query 467 GTTCTCTCTGCTGGACATGGATGCATGTTGCAATACG-CTCTGCTTCACCTTGCTGGCTA 525
|| | ||||| || ||||| |||||| | || |||| || |||||||||| ||||||||
Sbjct 411 ATTTTGTCTGCCGGTCATGGTTGCATGCTCCAGTACGCCT-TGCTTCACCTCGCTGGCTA 469
Query 526 CGACAGCGTTAGGGAGGAAGATTTGAAGAGCTTCCGTCAATGGGGAAGTAAGACTCCAGG 585
|||||| || ||||| || |||||||||| || ||||| |||||||||| |||||||||
Sbjct 470 CGACAGTGTCAGGGAAGATGATTTGAAGAATTTTCGTCAGTGGGGAAGTAGGACTCCAGG 529
Query 586 ACATCCTGAGAATTTTGAGACTCCTGGTGTTGAAGCCACTACTGGTCCTCTTGGACAAGG 645
|||||| |||||||||||||||||||||||||||| ||| |||||||| ||||| |||||
Sbjct 530 ACATCCCGAGAATTTTGAGACTCCTGGTGTTGAAGTCACCACTGGTCCACTTGGGCAAGG 589
Query 646 TATTGCAAATGCTGTTGGTTTAGCTCTTGCGGAGAAGCATTTGGCTGCTAGATTTAACAA 705
|||||||||||||||||||| || ||||||||||||||||||||||| || || |||||
Sbjct 590 AATTGCAAATGCTGTTGGTTTGGCACTTGCGGAGAAGCATTTGGCTGCCAGGTTCAACAA 649
Query 706 ACCTGACAATGAGATTGTTGACCACTACACGTATTCGATTCTTGGAGATGGTTGTCAGAT 765
||||| |||||||||||| ||||| |||||||| | ||||| |||||||| ||||||||
Sbjct 650 ACCTGGCAATGAGATTGTCGACCATTACACGTACGCTATTCTCGGAGATGGATGTCAGAT 709
Query 766 GGAAGGGATTTCAAATGAAGTTTGCTCTCTAGCTGGTCACTGGGGACTTGGAAAGCTAAT 825
|||||| ||| ||||||||| ||| ||||| || || |||||||| || || ||||| ||
Sbjct 710 GGAAGGAATTGCAAATGAAGCTTGTTCTCTTGCAGGGCACTGGGGTCTGGGGAAGCTCAT 769
Query 826 CGC-TTTCTACGATGACAATCACATTTCCATTGATGGAGACACAGATATTGCTTTTACCG 884
|| ||| || |||||||| |||||||| ||||| || ||||| || ||||| |||||||
Sbjct 770 TGCCTTT-TATGATGACAACCACATTTCTATTGACGGTGACACGGAGATTGCCTTTACCG 828
Query 885 AGAGCGTGGACAA-ACGCTTTGAAGC-TCTTGGATGGCATGTTATCTGGGTAAAGAATGG 942
||| ||||| || ||| ||| || |||||| ||||||||||| ||||| ||||||||
Sbjct 829 AGAATGTGGA-AACACG-TTTCCAGGGTCTTGGTTGGCATGTTATATGGGTCAAGAATGG 886
Query 943 AAACAATGGTTATGATGAGATCCGTGCTGCCATTAGGGAAGCTAAGGCTGT-AACAGACA 1001
||||| ||||||||||| |||||||||||||||| ||||||||||||||| || |||||
Sbjct 887 AAACACCGGTTATGATGAAATCCGTGCTGCCATTAAGGAAGCTAAGGCTGTTAA-AGACA 945
Query 1002 AGCCCACTTTGATTAAGGTCACTACTACAATTGGTTATGGTTCTCCCAACAAGGCAAACT 1061
| ||||||||||| ||| | ||||| |||||||||||||| || || ||||||||||| |
Sbjct 946 AACCCACTTTGATCAAGATAACTACAACAATTGGTTATGGATCACCAAACAAGGCAAATT 1005
Query 1062 CATACAGTGTCCATGGA-GCTGCGCTTGGTGAGAAGGAAGTTGAGGCTACCCGAAACAAT 1120
| |||||||| || ||| | ||| || ||||| || |||||||| |||||| |||| |||
Sbjct 1006 CTTACAGTGTTCACGGAAG-TGCACTGGGTGAAAAAGAAGTTGATGCTACCAGAAAGAAT 1064
Query 1121 CTTGGGTGGCCATATGAGCCGTTCCATGTACCTGAGGATGTCAAAAGCCATTGGAGCCGT 1180
||||| |||||||||| ||| |||||||| ||||| ||| |||| ||||| ||||| |||
Sbjct 1065 CTTGGATGGCCATATGGGCCTTTCCATGTTCCTGAAGATATCAAGAGCCACTGGAGTCGT 1124
Query 1181 CACACGCCCGAAGGG-GCTGCTCTTGAAGCTGATTGGAATGCCAAATTTGCAG-CTTATG 1238
|| | ||| || || |||||||| ||| | || |||||||| || ||||| | || |||
Sbjct 1125 CATAT-CCCTAAAGGAGCTGCTCTCGAAACAGAATGGAATGCTAAGTTTGCTGACT-ATG 1182
Query 1239 AGAAGAAATATCCGGAGGAAGCTGCAGAGTTGAAATCTATTA-TCT-CAGGTGAA-TTGC 1295
||||||| || || | ||||||||||| |||||||||| | | | | | | || || |
Sbjct 1183 AGAAGAAGTACCCACAAGAAGCTGCAGAACTGAAATCTAT-AGT-TACTGTT-AACTTAC 1239
Query 1296 CCGTTGGTTGGGAGAAGGCACTT-CCTACATATACACCAGACTCTCCGGGTGATGCCACC 1354
| ||| ||||| || || || || || || || || || ||| | ||||| ||
Sbjct 1240 CTACTGGCTGGGAAAAATCA-TTGCCGACTTACACGCCCGAGAGTCCTGCAGATGCAACA 1298
Query 1355 AGAAACCTGTCTCAGCAATGTCTTAACGCACTTGCGAAAGCTG-TGCCTGGTTTTCTTGG 1413
|||||||| || || || |||||||| || ||||| |||| | | ||||| || || ||
Sbjct 1299 AGAAACCTCTCCCAACAGTGTCTTAATGCCCTTGC-AAAGGTTCTTCCTGGGTTCCTCGG 1357
Query 1414 TGGGAGTGCTGACCTTGCATCTTCCAACATGACAATGCTTAAAGCATTCGGCAACTTCCA 1473
|||||||||||||||||| || |||||||||||| |||| ||| || || |||||||
Sbjct 1358 TGGGAGTGCTGACCTTGCTTCATCCAACATGACATTGCTCAAAATGTTTGGGGACTTCCA 1417
Query 1474 AAA-AGCCACACCTGAAGAAAGAAACCTTAGATTTGGTGTCAGGGAACATGGTATGGGAG 1532
||| | | |||||||||| ||||||||||| ||||||||||||||||| | |||||||
Sbjct 1418 AAAGAACG-CACCTGAAGAGAGAAACCTTAGGTTTGGTGTCAGGGAACACAGCATGGGAG 1476
Query 1533 CTATCTGCAACGGCATTGCCCT-TCACAGCCCCGGTTTTATCCCTTACTGCGCAACTTTC 1591
|||||||||| |||||| || | ||||||||| || | ||||||||||| || || |||
Sbjct 1477 CTATCTGCAATGGCATTACC-TGTCACAGCCCGGGGCTCATCCCTTACTGTGCTACATTC 1535
Query 1592 TTTGTGTTTACTGACTATATGAGAGCTGCAATGAGAATCTCGGCTTTGTCTGAAGCTGGT 1651
||||| || || ||||| ||||||||||| || || |||| || ||||| |||| ||
Sbjct 1536 TTTGTCTTCACAGACTACATGAGAGCTGCCATCAGGCTCTCTGCCCTGTCTCAAGCAGGG 1595
Query 1652 GTTATATACGTTATGACCCATGACTCCATTGGTCTTGGAGAAGATGGACCAACCCACCAA 1711
||||| ||||| ||||||||||| || || |||||||||||||||||||| ||||||||
Sbjct 1596 GTTATCTACGTAATGACCCATGATTCAATCGGTCTTGGAGAAGATGGACCGACCCACCAG 1655
Query 1712 CCCATCGAACACT-TATCCAGTTTCCGTGCCATGCCCAATAT-TATGATGTTCCGTCCAG 1769
|| || ||||| | | | || ||||||||||||||||| || | ||||| | | ||||
Sbjct 1656 CCTATAGAACA-TGTGGCGAGCTTCCGTGCCATGCCCAACATCT-TGATGCTGAGGCCAG 1713
Query 1770 CTGATGGGAAC-GAAACAGCCGGTGCATACAAAATCGCTGTCACAAAAC-GTAAGACACC 1827
| ||||| ||| ||||| || || ||||||||| | ||||| | | ||| | |||| ||
Sbjct 1714 CGGATGG-AACTGAAACTGCGGGGGCATACAAAGTTGCTGT-AGAGAACAGAAAGAGGCC 1771
Query 1828 TTCTG-TCTTAGC-CTTATCTAGACAAAAGCTGCCTCAACTTCCAGGAACATCTATTGAG 1885
||| | || | || || || ||||||||||||||||| || || ||||| || |||||
Sbjct 1772 TTC-GATCCTGGCTCTG-TCCAGACAAAAGCTGCCTCATCTACCTGGAACTTCGGTTGAG 1829
Query 1886 AGCGTCGAGAAAGGTGGATACACCATTTCTGACAACTCAACCGGTAACAAACCCGATGTG 1945
| || ||||| || ||||| || || |||||||| || ||||||||||| || ||
Sbjct 1830 GGAGTGGAGAAGGGGGGATATGTAATCTCAGACAACTCCACAGGTAACAAACCAGACGTA 1889
Query 1946 ATCTTGATCGGAACTGGATCAGAGCTAGAGATTGCTGCTCAAG-CTGCAGAGAAGTTAAG 2004
||| |||| || || || || ||||||||||||||||| ||| ||| ||||||| ||||
Sbjct 1890 ATCCTGATGGGGACAGGGTCGGAGCTAGAGATTGCTGCA-AAGGCTGGAGAGAAGCTAAG 1948
Query 2005 GGAACAAGGCAAAAGT-GTGAGAGTTGTTTC-CTT-TGTATGTTGGGAGCT-TTTCGACG 2060
||| |||| || || |||||||| || || || || | |||||||||| ||| || |
Sbjct 1949 AGAAGAAGG-AAGAGCAGTGAGAGTAGTGTCACTGGTG-A-GTTGGGAGCTGTTT-GATG 2004
Query 2061 AGCAAT-CAGATGCATACAAGGAAAGTGTTTTGCCATCTGATGTATCAGCTAGAGTTAGT 2119
| ||| | || | |||||| |||||||| || || || || || ||||| ||||| ||
Sbjct 2005 AACAAAGC-GAAGAATACAAAGAAAGTGTGTTACCTTCAGAGGTTTCAGCAAGAGTGAGC 2063
Query 2120 ATCGAAGCTGGATCGACTTTTGGATGGG-GAAAGATCGTCGGAGGAAAAGGGAAATCGAT 2178
|| ||||| || ||||| ||||| |||| ||| ||| || || ||||| ||| | ||
Sbjct 2064 ATTGAAGCAGGGTCGACCTTTGGGTGGGAGAA-GATGGTTGGCTCCAAAGGAAAAGCCAT 2122
Query 2179 TGGAATTGATACGTTT-GGAGCAAGTGCACCAGCAGGA 2215
|| | || | |||| ||||||||||||||||| |||
Sbjct 2123 CGGTGTAGACA-GTTTTGGAGCAAGTGCACCAGC-GGA 2158
> Ahg927965 jgi|Araly1|927965|scaffold_300422.1
Length=258
Score = 248 bits (134), Expect = 1e-64
Identities = 179/198 (90%), Gaps = 13/198 (7%)
Strand=Plus/Plus
Query 1523 GGTATGGGAGCTATCTGCAACGGCATTGCCCTTCACAGCCCCGGTTTTATCC-CTTACTG 1581
||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 33 GGTATGGGAGCTATCTGCAACGGCATTGCCCTTCACAGCCCCGGTTTTA-CCACATACTG 91
Query 1582 CGCAACTTTCTTTGTGTTTACTGACTATATGAGAGCTGCAATGAGAATCTCGGCTTTGTC 1641
||||||||||||| || || | || | | | || || |||||||||||||||||||
Sbjct 92 CGCAACTTTCTTTTTG-TT--T-AC--T-T---A-CTACAGTGAGAATCTCGGCTTTGTC 140
Query 1642 TGAAGCTGGTGTTATATACGTTATGACCCATGACTCCATTGGTCTTGGAGAAGATGGACC 1701
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 TGAAGCTTCTGTTATATACGTTATGACCCATGACTCCATTGGTCTTGGAGAAGATGGACC 200
Query 1702 AACCCACCAACCCATCGA 1719
||||||||||||||||||
Sbjct 201 AACCCACCAACCCATCGA 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97968110140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5