BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45310.1
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935483 jgi|Araly1|935483|scaffold_403471.1 2316 0.0
Ahg943753 jgi|Araly1|943753|scaffold_604297.1 640 0.0
> Ahg935483 jgi|Araly1|935483|scaffold_403471.1
Length=1363
Score = 2316 bits (1254), Expect = 0.0
Identities = 1312/1341 (98%), Gaps = 0/1341 (0%)
Strand=Plus/Plus
Query 566 gagaaAATGTCACGTCTTGACGACATACCTTCAAGCCCAGGCAAATTCAAGATGGAGAAA 625
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 GAGAAAATGTCGCGTCTTGACGACATACCTTCAAGCCCAGGCAAATTCAAGATGGAGAAA 77
Query 626 TCTTCCTACTTGCATCGTCTCAGATTCCAAtcttctctcacaaagtttgcatttttctcc 685
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TCTTCTTACTTGCATCGTCTCAGATTCCAATCTTCTCTCACAAAGTTTGCATTTTTCTCC 137
Query 686 ttcttcctcctctgtctcatctctctactcttcctccgatctccACCGTCCATTAACCCT 745
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 138 TTCTTCCTCCTCTGTCTCATCTCTCTACTCTTCCTCCGATCTCCCCCGTCCATTAACCCT 197
Query 746 TCTTCACCGTCCGATCCATCTCGCCGTTCACTCCGAACCAACACCTACGGAGGACCAGCT 805
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 198 TCTTCACCGTCCGATCCATCTCGCCGCTCACTCCGAACCAACAGCTACGGAGGACCAGCT 257
Query 806 TGGGAAAAACGTCTCAGATCCTCAGCTCGAATCCGAACCTCAACAAACAACGGAATCACA 865
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 TGGGAAAAACGTCTCCGATCCTCAGCTCGAATCCGAACCTCAACAAACAACGGAATCACA 317
Query 866 GTTTTAGTAACCGGAGCAGCTGGTTTCGTCGGAACACACGTCTCCGCCGCATTAAAACGC 925
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GTTTTAGTCACCGGAGCAGCTGGTTTCGTCGGAACACACGTCTCCGCCGCATTAAAACGC 377
Query 926 CGCGGAGACGGCGTAATCGGCCTCGACAACTTCAACGATTACTACGATCCATCTCTGAAA 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 CGCGGAGACGGCGTAATCGGCCTCGACAACTTCAACGATTACTACGATCCATCTCTGAAA 437
Query 986 CGAGCAAGACGAGCTTTACTCGAGAGAAGTGGGATCTTCATCGTAGAAGGAGACATAAAC 1045
|||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 438 CGAGCAAGACAAGCTTTGCTCGAAAGAAGTGGGATCTTCATCGTAGAAGGAGACATAAAC 497
Query 1046 GACGTCGAATTACTCCGTAAGCTATTCAAGATCGTCTCCTTCACACACGTTATGCATTTA 1105
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GACGTCGAATTGCTTCGTAAGCTATTCAAGATCGTCTCCTTCACACACGTTATGCATTTA 557
Query 1106 GCAGCTCAAGCTGGTGTACGGTACGCAATGGAAAACCCTAGCTCGTACGTTCATAGCAAC 1165
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 558 GCAGCTCAAGCTGGTGTACGGTACGCAATGGAAAACCCTAGCTCTTATGTTCATAGCAAC 617
Query 1166 ATCGCCGGATTCGTCAATCTCCTCGAGATCTGCAAATCTGTGAATCCACAACCTGCTATA 1225
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 ATCGCCGGATTTGTCAATCTCCTCGAGATCTGCAAATCTGTGAATCCACAACCTGCTATA 677
Query 1226 GTCTGGGCTTCGTCTAGCTCCGTCTACGGACTCAACACCAAAGTTCCGTTCTCGGAGAAA 1285
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 678 GTCTGGGCTTCGTCTAGCTCCGTCTACGGACTCAACACGAAAGTTCCGTTCTCGGAGAAA 737
Query 1286 GATAAAACAGATCAACCGGCGAGTTTATACGCCGCCACTAAAAAAGCCGGCGAAGAGATC 1345
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 738 GATAAAACAGATCAACCGGCGAGTTTATACGCCGCGACTAAAAAAGCCGGCGAAGAGATC 797
Query 1346 GCACATACCTACAACCACATCTATGGATTATCTCTAACCGGATTAAGATTTTTCACCGTG 1405
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 798 GCACATACCTATAACCACATCTATGGATTATCTCTAACCGGATTAAGGTTTTTCACGGTG 857
Query 1406 TATGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACTAAAGATATTCTAAAA 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 TATGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACTAAAGATATTCTAAAA 917
Query 1466 GGCAAATCGATTTCGATATTCGAATCGGCGAATCACGGAACGGTGGCTAGGGATTTCACT 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 GGCAAATCGATTTCGATATTCGAATCGGCGAATCACGGAACGGTGGCTAGGGATTTCACT 977
Query 1526 TACATAGACGATATAGTGAAGGGATGTTTAGCGGCGCTAGATACGGCGGAGAAGAGTACA 1585
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 978 TACATCGACGATATAGTGAAAGGATGTTTAGCGGCGCTAGATACGGCGGAGAAGAGTACA 1037
Query 1586 GGGAGTGGAGGGAAGAAGAGAGGTCCGGCGCAATTGAGAGTGTTTAACCTCGGAAACACG 1645
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 GGAAGTGGAGGGAAGAAGAGAGGTCCGGCGCAATTGAGAGTGTTTAACCTCGGAAACACG 1097
Query 1646 TCGCCGGTGCCGGTTTCAGATCTGGTGAGGATATTGGAGAGACAATTGAAAGTGAAGGCG 1705
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1098 TCGCCGGTGCCGGTTTCAGATCTGGTGAGAATATTGGAGAGACAATTGAAAGTGAAGGCG 1157
Query 1706 AAGAAGAATTTGATTAAGATGCCACGAAACGGTGACGTTCCGTTTACTCATGCTAATATT 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 AAGAAGAATTTGATTAAGATGCCACGAAACGGTGACGTTCCGTTTACTCATGCTAATATT 1217
Query 1766 AGTTTAGCTCAACGTGAGCTTGGTTATAAACCGACTACGGATTTGCAAACCGGTTTGAAG 1825
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1218 AGTTTAGCTCAACGTGAGCTTGGTTATAAACCGACGACGGATTTGCAAACCGGTTTGAAG 1277
Query 1826 AAGTTTGTCAGATGGTATTTGAGTTATTACTCCGGCGACAAAAAAGCCGCCGCTAgatga 1885
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1278 AAGTTTGTGAGATGGTATTTGAGTTATTACTCCGGCGAGAAAAAAGCCGCCGCTAGATGA 1337
Query 1886 tctttttttctggttgatgat 1906
| ||||||| |||||||||||
Sbjct 1338 TTTTTTTTTTTGGTTGATGAT 1358
> Ahg943753 jgi|Araly1|943753|scaffold_604297.1
Length=1330
Score = 640 bits (346), Expect = 0.0
Identities = 885/1141 (78%), Gaps = 54/1141 (5%)
Strand=Plus/Plus
Query 756 CCGATCCATCTCGCCGTTCACTCCGAACCAACACCTACGGAGGACCAGCTTGGGAAAAAC 815
||||||| ||||||||||| || || ||| || | | |||||||| |||||||| ||||
Sbjct 190 CCGATCCTTCTCGCCGTTCTCTTCGTACCTACTCTTGGGGAGGACCCGCTTGGGAGAAAC 249
Query 816 GTCTCAGATCCTCAGCTCGAATCCGAACCTCAACAAACAACGGAATCACAGTTTTAGTAA 875
| |||||||||| || || |||| ||| | | | ||| || | ||| | || |
Sbjct 250 GGGTCAGATCCTCCGCCCGTGTCCGTACC-C-GC---C-GCGGTTTCTCTGTTCTCGTCA 303
Query 876 CCGGAGCAGCTGGTTTCGTCGGAACACACGTCTCCGCCGCAT-TAAAACGCCGCGGAGAC 934
||||||| || ||||||||||| || || ||||||||||| | | ||||| || |||||
Sbjct 304 CCGGAGCCGCCGGTTTCGTCGGTACCCATGTCTCCGCCGC-TCTTAAACGGCGTGGAGAT 362
Query 935 GGCGTAATCGGCCTCGACAACTTCAACGATTACTACGATCCATCTCTGAA-ACGAGCAAG 993
||||| | || || ||||||||||||||||||||||||||||| || || | |||||||
Sbjct 363 GGCGTTCTGGGACTGGACAACTTCAACGATTACTACGATCCATCGCTAAAGA-GAGCAAG 421
Query 994 ACGAGC--TTTACTCGAGAGAAGTGG-GATCTTCATCGTAGAAGGAGACATAAACGACG- 1049
| ||| ||| | |||||||| || | |||| | || ||||||||||| || ||||
Sbjct 422 GCAAGCCCTTT--TGGAGAGAAGCGGAG-TCTTTGTGGTTGAAGGAGACATCAATGACGC 478
Query 1050 TCGAAT-TACTCCGTA-A-GCTATTC-AAGATCGTCTCCTTCACACACGTTATGCATTTA 1105
| | | | || | | | ||| || ||| | ||| |||| || ||||||||||||||
Sbjct 479 T-GC-TCT-CTT-GAAGAAGCTCTTTGAAGTT-GTCCCCTTTACCCACGTTATGCATTTG 533
Query 1106 GCAGCTCAAGCTGGTGT-ACGGTACGCAATGGAAAACCCTAGCTCGTACGTTCATAGCAA 1164
|| |||||||||||||| | ||||||| |||||||| || ||||| || ||||| || ||
Sbjct 534 GCTGCTCAAGCTGGTGTCA-GGTACGCCATGGAAAATCCAAGCTCCTATGTTCACAGTAA 592
Query 1165 CATCGCCGGATTCGTCAATCTCCTCGAGATCTGCAAATCTG-TGAATCCACAACCTGCTA 1223
|||||| || |||||||||||||| ||| | |||||||||| | ||||| ||||| || |
Sbjct 593 CATCGCTGGCTTCGTCAATCTCCTTGAGGTTTGCAAATCTGCT-AATCCCCAACCCGCCA 651
Query 1224 TAGTCTGGGCTTCGTCTAGCTCCGTCTACGGACTCAACACCAAAGTTCCGTTCTCGGAGA 1283
| ||||||||||| |||||||| ||||| ||||||||||| ||||| || ||||| ||||
Sbjct 652 TTGTCTGGGCTTCCTCTAGCTCTGTCTATGGACTCAACACTAAAGTCCCCTTCTCCGAGA 711
Query 1284 AAGATAAAACAGATCAACCGGCGAGTTTATACGCCGCCACTAAAAAAGCCGGCGAAGAGA 1343
|||| | ||| ||||||||||| ||| | || || || ||||| ||||| || |||||||
Sbjct 712 AAGACAGAACTGATCAACCGGCTAGTCTCTATGCTGCTACTAAGAAAGCTGGTGAAGAGA 771
Query 1344 TCGCACATACCTACAACCACATCTATGGA-TTATCTCTAACCGGATTAAGATTTTTCACC 1402
| || || || ||||| ||||||||||| || ||||| || || || || |||||||||
Sbjct 772 TTGCTCACACTTACAATCACATCTATGGCCTT-TCTCTTACTGGCTTGAGGTTTTTCACC 830
Query 1403 GTGTATGGACCTTGGGGAAGACCAGACATGGCGTATTTCTTCTTCACTAAAGATATTCTA 1462
|| ||||| ||||||||||| || |||||||| |||||||||||||| | ||| |||||
Sbjct 831 GTCTATGGTCCTTGGGGAAGGCCTGACATGGCCTATTTCTTCTTCACCAGAGACATTCTC 890
Query 1463 AAAGGCAAATCGATTTCGATATTCGAATCGG-CGAATCACGGAACGGTGGCTAGGGATTT 1521
||||| ||| | ||||| || || || || | || || ||||| ||||||||||| ||
Sbjct 891 AAAGGGAAAGCCATTTCAATCTTTGAGGGGGTC-AACCATGGAACCGTGGCTAGGGACTT 949
Query 1522 CACTTACATAGACGATATAGTGAAGGGATGTTTAGCGGCGCTAGATACGGCGGAGAAGAG 1581
||||||||| || || || || ||||| || || | ||| | || || || ||||||||
Sbjct 950 CACTTACATTGATGACATTGTCAAGGGCTGCTTGGGGGCTTTGGACACCGCTGAGAAGAG 1009
Query 1582 TACAGGGAGTGGAGGGAAGAAGAGAGGTCCGGCGCAATTGA-GAGTGTTT-AACCTCGGA 1639
||||| ||||| || |||||| | ||| |||| || || | | || ||| || |||||
Sbjct 1010 CACAGGTAGTGGTGGTAAGAAGCGCGGTGCGGCTCAGTT-ACGGGT-TTTCAATCTCGGC 1067
Query 1640 AACACGTCGCCGGTGCCGGTTTCAGATCTGGTGAGGATAT-TGGAGAGACAAT-TGAAAG 1697
||||| ||||| || || || | |||||||| | || | | ||||||| | ||||||
Sbjct 1068 AACACTTCGCCCGTTCCAGTGACTGATCTGGTCACCAT-TCTCGAGAGACT-TCTGAAAG 1125
Query 1698 TGAAGGCGAAGAAGAAT-TTGATTAAGATGCC-ACGAAACGGTGACGTTCCGTTTACTCA 1755
||||||| |||| ||| || || ||| |||| | ||| ||| || || | ||| |||||
Sbjct 1126 TGAAGGCCAAGAGGAACATT-ATGAAGTTGCCGAGGAA-CGGGGATGTGCAGTTCACTCA 1183
Query 1756 TGCTAATATTAGTTTAGCTCA-ACGTGAGCTTGGTTATAAACCGACTACGGAT-TTGCAA 1813
||||||||| |||| || || | | ||||| || || ||||| || || ||| || ||
Sbjct 1184 TGCTAATATCAGTTCCGCACAGA-GAGAGCTCGGGTACAAACCCACCACCGATCTT-CAG 1241
Query 1814 ACCGGTTTGAAGAAGTTTGTC-AGATGGTATTTGAGTTATTACTCCGGCGACAAA-AAAG 1871
|| ||| | |||||||||| | |||||||||||| |||| ||| ||||| ||| ||||
Sbjct 1242 ACGGGTCTCAAGAAGTTTG-CGAGATGGTATTTGGGTTACTACAACGGCGG-AAAGAAAG 1299
Query 1872 C 1872
|
Sbjct 1300 C 1300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73742714320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5