BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45320.1
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935484 jgi|Araly1|935484|scaffold_403472.1 2023 0.0
> Ahg935484 jgi|Araly1|935484|scaffold_403472.1
Length=1217
Score = 2023 bits (1095), Expect = 0.0
Identities = 1173/1211 (97%), Gaps = 3/1211 (0%)
Strand=Plus/Plus
Query 28 ATACGATATTAATGGGTTCCCGGAGAGATTATCGGAGCATGAGATCTTGTAGCGGATGGC 87
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 ATACGGTATTAATGGGTTCCCGGAGAGATTATCGGAGCATGAGATCTTGTAGCGGATGGC 69
Query 88 GTCGAATTCTTTTACTTATTCCTGTGCTCTTTCTTCTTCCTCATCTCTCTTCACTTGTTG 147
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||
Sbjct 70 GTCGAATTCTTTTACTTGTTCCTGTGCTCTTTCTTCTTCCTCATCTCTCGTCACTTCTTG 129
Query 148 ATTTTTCTTCGGATTCGGCTACGAGGAACGACGCGCGAACCATTCCTAATAAGAAATTGG 207
| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 130 GTATTTCTTCGGATTCGGCTAAGAGGAACGATGCGCGAACCATTCCTAATAAGAAATTGG 189
Query 208 ATCACCTTGTGCTCGGTCCTGTAGCTGGACAAGGCTTGTCTGATCGATTTCATTGCCGAG 267
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 190 ATCACCTTGTGCTCGGTCCTGTAGCTGGACAAGGCTTGTCGGATCGATTGCATTGCCGAG 249
Query 268 GCACGAAGGCTCTGAACAAGACTCATGGTTCAACTTCTCATGTGTCTGGTGCTGGAAATG 327
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 250 GCACGAAGGCTCTGAACAAGACTCATGGTT---CTTCTCATGTGTCTGGTGCTGGAAATG 306
Query 328 GCGTTTCTTTTGTGACGGTGTTTACTGTTTATAATACGTCGCTCGGAAATGTGAAATCCT 387
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 307 GTGTTTCTTTTGTGACGGTGTTTACTGTTTATAATACGTCGCTCGGAAATGCGAAATCCT 366
Query 388 CCAATCCGGTTTCTGTTGTTGGGAATGTTACCTACAGCAAGCCAGAGAGGTCAATGGCTG 447
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 367 CCAATATGGTTTCTGTTGTTGGGAATGTTACCTACAGCAAGCCAGAGAGGTCAATGGCAG 426
Query 448 TTCTAAATGCATTCGCCAACTTCATTCAGGTGACTATGCCCAAGAGCAATGTTGTCATAT 507
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 427 TTCTAAATGCATTCGCCTACTTCATTCAGGTGACTATGCCCAAGAGTAATGTTGTCATAT 486
Query 508 TGACTGATCCAGCTTCTGATCTCTCCATCCAACAAAGCAATGTGATATTACAGCCTGTTC 567
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 487 TGACTGATCCAGCTTCTGATCTCTCCATCCAACAAAGCAATGTGATGGTACAGCCTGTTC 546
Query 568 AGGGTGATTATTCACGGGGTAACCTGATGCTTCAAAGAATCAGGTCTTACATTACCTTTC 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGGGTGATTATTCACGGGGTAACCTGATGCTTCAAAGAATCAGGTCTTACATTACCTTTC 606
Query 628 TTGAGATGAAGCTCGAGAAGAATGAGGGTGGGATAAACCACTATATCTTCACTGATTCTG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTGAGATGAAGCTCGAGAAGAATGAGGGTGGGATAAACCACTATATCTTCACTGATTCTG 666
Query 688 ATATAGCTGTGGTTGACGACGTCGGGACTATATTTGACAAGCATTCAAGCTTCCATCTAG 747
|||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||||
Sbjct 667 ATATAGCTGTGGTTGACGACATCGGGGCTATATTTGACAAGCATCCAAGCTTTCATCTAG 726
Query 748 CACTCACATTCAGGAACAATAAAGATCAGCCGTTGAATTCAGGATTTATAGCAGTGAGAG 807
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 727 CACTCACATTCAGGAACAATAAAGATCAGCCGCTGAATTCAGGATTTATAGCAGTGAGAG 786
Query 808 GCACACGTGAAGGGATCCTAAGGGCCAAAGTTTTTCTTGAAGAAGTCCTAAAAGCTTACA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GCACACGTGAAGGGATCCTAAGGGCCAAAGTTTTTCTTGAAGAAGTCCTAAAAGCTTACA 846
Query 868 AAACCAAATACATGAAAGCTTCGCGCATGCTTGGTGATCAGTTGGCTCTGGTATCGGTTG 927
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 847 AAACCAAATACATGAAAGCTTCGCGCATGCTTGGTGATCAGTTGGCTCTGGTTTGGGTTG 906
Query 928 TTAAATCTCATGCTTCCTTTGACGCAAAGAGATTCACAAAGCCACAAGCTTTCACAGAAG 987
||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct 907 TTAAATCTCATCCTTCTTTTGATGCAAAGAGATTAACAAAGCCACAAGCTTTCACACAAG 966
Query 988 AAATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTCTATACAACTGGACACCTCCTG 1047
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 967 AAATAGCTGGAGCTTCAGTGTTATTTCTACCATGTGCTTTATACAACTGGACACCTCCTG 1026
Query 1048 AAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGATTGTTCACTTCAAAGGAT 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 AAGGTGCTGGTCAGTTTCATGGCATGCCATTAGATGTCAAGATTGTTCACTTCAAAGGAT 1086
Query 1108 CAAGAAAACGTTTAATGCTCGAGGCATGGAACTTCTACAAATCTACTTCAAACATTCCAG 1167
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1087 CAAGAAAACGTTTAATGCTAGAGGCATGGAACTTCTACAAATCAACTTCAAACATTCCAG 1146
Query 1168 ATATGTTGTGTCTTGTTCTAGGTAGTGGAAGAACTAAATACGATTTCTGATTGTTGACGA 1227
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1147 ATATGTTGTGTCTTGTTCTAGGTAGTGGAAGAACTAAATACGATTTCTAATTGTTGACGA 1206
Query 1228 TGACAACTCTG 1238
|||||||||||
Sbjct 1207 TGACAACTCTG 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47958629586
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5