BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45330.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483669 jgi|Araly1|483669|fgenesh2_kg.4__2729__AT2G45330.2 1513 0.0
Ahg896030 jgi|Araly1|896030|Al_scaffold_0006_4026 366 2e-100
Ahg311844 jgi|Araly1|311844|fgenesh1_pm.C_scaffold_1000624 270 1e-71
Ahg947485 jgi|Araly1|947485|scaffold_703714.1 206 3e-52
> Ahg483669 jgi|Araly1|483669|fgenesh2_kg.4__2729__AT2G45330.2
Length=1035
Score = 1513 bits (819), Expect = 0.0
Identities = 954/1016 (94%), Gaps = 21/1016 (2%)
Strand=Plus/Plus
Query 14 CGTCTCTGTCGTCATCGACTTCCTCTTCCTCTGACTTTGAGCAGCTCTGTCTTCTTCTCG 73
||||||||||||| ||| ||| | | ||||||||||||||||||||||||||||||||
Sbjct 40 CGTCTCTGTCGTCTTCGTCTT-C-C-AACTCTGACTTTGAGCAGCTCTGTCTTCTTCTCG 96
Query 74 AAATCGTCTCCTGTTTCTTCTGCTTTCATGGATGCTTCAAATCCCAATTCTTCTAGAAAA 133
||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 97 AAATCGTCTCCTG--T-TTCTGCTTTCATGGAAGCTTCAAATCCCAATTCTTCTAGAAAA 153
Query 134 TCTAATGTCTCTTCCTTCGCTCAGTCCAGTCGAAGCGGTGGTAGAGGAGGAGGATATGAG 193
|| ||| ||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct 154 TCCAATTTCTCTTCCTTCGCTCAGTCCAGTCG-A--------AGAGGAGGAGGCTATGAG 204
Query 194 AGAGATAACGATCGACGGAGACCTCAGGGTCGTGGCGACGGTGGAGGCGGAAAGGATAGA 253
||||||||||||||||||||||||||||| ||| | | ||| ||||||||||| ||||||
Sbjct 205 AGAGATAACGATCGACGGAGACCTCAGGGACGT-G-G-CGGCGGAGGCGGAAAAGATAGA 261
Query 254 ATCGATGCACTTGGACGACTCTTGACGAGAATATTGCGACATATGGCTACTGAGCTGAGA 313
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 262 ATCGATGCCCTTGGAAGACTCTTGACGAGAATATTGCGACACATGGCTACTGAGCTGAGA 321
Query 314 TTGAACATGAGAGGTGATGGTTTTGTTAAAGTTGAAGATTTACTTAACCTGAATTTGAAA 373
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TTGAACATGCGAGGTGATGGTTTTGTTAAAGTTGAAGATTTACTTAACCTGAATTTGAAA 381
Query 374 ACTTCTGCAAATATTCAGTTAAAGTCACACACGATTGATGAAATTAGAGAGGCTGTGAGA 433
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 382 ACTTCTGCAAATATTCAATTGAAGTCACACACGATTGATGAAATTAGAGAGGCTGTGAGA 441
Query 434 AGGGACAATAAGCAACGGTTTAGTCTCATCGATGAGAATGGAGAGCTCTTGATTCGCGCT 493
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 442 AGGGACAATAAACAACGGTTTAGCCTCATCGATGAGAATGGAGAGCTCTTGATTCGCGCT 501
Query 494 AACCAAGGCCATTCGATCACGACGGTTGAGTCAGAGAAGTTACTTAAACCAATACTGTCA 553
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 502 AACCAAGGCCACTCGATCACGACGGTTGAGTCAGAAAAGTTACTTAAACCAATACTGTCA 561
Query 554 CCAGAAGAAGCTCCAGTGTGTGTACATGGAACTTATAGGAAGAATTTGGAATCCATCTTA 613
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 CCAGAAGAAGTTCCAGTGTGTGTACATGGAACTTATAGGAAGAATTTGGAATCCATCTTA 621
Query 614 GCATCGGGCTTAAAGCGTATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCAACA 673
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GCATCGGGCTTAAAGCGCATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCAACA 681
Query 674 GATGGTGAAGTGATTAGTGGCATGAGAAGAAATGTAAATGTTATCATCTTCCTCGACATC 733
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 682 GATGGTGAAGTGATTAGTGGCATGAGAAGGAATGTAAATGTTATCATCTTCCTCGACGTC 741
Query 734 AAGAAAGCTCTTGAAGATGGGATTGCGTTCTACATATCAGACAACAAAGTGATTTTGACT 793
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 742 AAGAAAGCTCTTGCAGATGGGATTGCGTTCTACATTTCAGACAACAAAGTGATTTTGACT 801
Query 794 GAAGGCATTGATGGTGTATTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGAT 853
|||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 802 GAAGGCATTGATGGAGTAGTGCCGGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGAT 861
Query 854 CGGCAATCCATACCTTTCTGATTCATATAATTCAACATCATGCGAAGATTGACAGGATCC 913
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 862 CGGCAATCCATACCTTTCTGATTCATGTAATTCAACATCATGCGAAGATTCACAGGATTC 921
Query 914 TATGACAATGATTGTGAGGATTCTTC-TGAACCTTGATTATGTAATGTTGTCTCAGTGTT 972
||||||||||||||||| ||||||| |||||||||||||||||||| |||||| |||
Sbjct 922 TATGACAATGATTGTGACGATTCTTGGTGAACCTTGATTATGTAATG--GTCTCACTGTC 979
Query 973 TTCAATTGCACATATGACAATTTATGAAAACTTTCAAGATTATGTTGTTTCCTTTG 1028
|||||||||||||||| || |||||| ||||||||||||||||||||||||| |||
Sbjct 980 TTCAATTGCACATATGCCAGTTTATGGAAACTTTCAAGATTATGTTGTTTCCGTTG 1035
> Ahg896030 jgi|Araly1|896030|Al_scaffold_0006_4026
Length=252
Score = 366 bits (198), Expect = 2e-100
Identities = 236/254 (93%), Gaps = 4/254 (2%)
Strand=Plus/Plus
Query 446 CAACGGTTTAGTCTCATCGATGAGAATGGAGAGCTCTTGATTCGCGCTAACCAAGGCCA- 504
|||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 2 CAAC-GTTTAGCCTCATAGATGAGAATGGAGAGCTCTTGATTCGCGCAAACCAAGGCCAC 60
Query 505 TTCGATCACGACGGTTGAGTCAGAGAAGTTACTTAAACCAATACTGTCACCAGAAGAAGC 564
|| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 TT-GATCACGGCGGTTGAGTCAGAGAAGTTACTTAAACCAATCCTGTCACCAGAAGAAGC 119
Query 565 TCCAGTGTGTGTACATGGAACTTATAGGAAGAATTTGGAATCCATCTTAGCATCGGGCTT 624
|||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 120 TCCAGTGTGTGTGCATGGAACTTATAAGAAGAATTTGGAATCCATCTTATCATCGGGCTT 179
Query 625 AAAGCGTATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCAACAGATGGTGAAGT 684
|||||| ||||||||| ||||| |||||||||||||||| || |||||||||||||||||
Sbjct 180 AAAGCGCATGAATAGACTGCATATTCACTTCTCTTGTGGCTTGCCAACAGATGGTGAAGT 239
Query 685 GATTAGTGGCATGA 698
||||| |||||||
Sbjct 240 GATTAA-GGCATGA 252
> Ahg311844 jgi|Araly1|311844|fgenesh1_pm.C_scaffold_1000624
Length=579
Score = 270 bits (146), Expect = 1e-71
Identities = 170/182 (93%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 511 CACGACGGTTGAGTCAGAGAAGTTACTTAAACCAATACTGTCACCAGAAGAAGCTCCAGT 570
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 252 CACAACGGTTGAGTCAGAGAAGTTACTTAAACCAATCCTGTCACCAGAAGAAGCTCCGGT 311
Query 571 GTGTGTACATGGAACTTATAGGAAGAATTTGGAATCCATCTTAGCATCGGGCTTAAAGCG 630
|||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 312 GTGTGTGCATGGAACTTATAAGAAGAATTTGGAATCCATCTTATCATCGGGCTTAAAGCG 371
Query 631 TATGAATAGAATGCATGTTCACTTCTCTTGTGGATTACCAACAGATGGTGAAGTGATTAG 690
||||||||| ||||| |||||||||||||||| || |||||||||||||||||| ||||
Sbjct 372 CATGAATAGACTGCATATTCACTTCTCTTGTGGCTTGCCAACAGATGGTGAAGTGGTTAG 431
Query 691 TG 692
||
Sbjct 432 TG 433
Score = 233 bits (126), Expect = 2e-60
Identities = 141/148 (95%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 728 GACATCAAGAAAGCTCTTGAAGATGGGATTGCGTTCTACATATCAGACAACAAAGTGATT 787
|||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 433 GACAACAAGAAAGCTCTTGAAGATGGGATTGCATTCTACATTTCAGACAACAAAGTGATT 492
Query 788 TTGACTGAAGGCATTGATGGTGTATTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGG 847
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 493 TTGACTGAAGGCATTGATGGTGTAGTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGG 552
Query 848 CCTGATCGGCAATCC-ATACCTTTCTGA 874
|||||||| ||||| ||||||||||||
Sbjct 553 CCTGATCGA-AATCCTATACCTTTCTGA 579
> Ahg947485 jgi|Araly1|947485|scaffold_703714.1
Length=750
Score = 206 bits (111), Expect = 3e-52
Identities = 134/145 (92%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 748 AGATGGGATTGCGTTCTACATATCAGACAACAAAGTGATTTTGACTGAAGGCATTGATGG 807
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 603 AGATGGGATTGCATTCTACATTTCAGACAACAAAGTGATTTTGACTGAAGGAATTGATGG 662
Query 808 TGTATTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGATCGGCAATCC-ATAC 866
|||| ||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 663 TGTAGTGCCTGTCGATTACTTCCAGAAGATCGAGTCTTGGCCTGATCGAAAA-CCTATAC 721
Query 867 CTTTCTGATTCATATAATTCAACAT 891
|||||||||||| | || |||||||
Sbjct 722 CTTTCTGATTCACAGAACTCAACAT 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5