BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45360.1
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483673 jgi|Araly1|483673|fgenesh2_kg.4__2733__AT2G45360.1 1077 0.0
Ahg483674 jgi|Araly1|483674|fgenesh2_kg.4__2734__AT2G45380.2 63.9 2e-09
> Ahg483673 jgi|Araly1|483673|fgenesh2_kg.4__2733__AT2G45360.1
Length=788
Score = 1077 bits (583), Expect = 0.0
Identities = 687/734 (94%), Gaps = 20/734 (3%)
Strand=Plus/Plus
Query 1 ATCATCAAACTCCATTTCACTTTCACTATGAAGCTTGTCTGGTCGCCGGAAACTGCTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCATCAAACTCCATTTCACTTTCACTATGAAGCTTGTCTGGTCGCCGGAAACTGCTTCT 60
Query 61 GACGCCTACATCGACACCGTTAAATCGTGTAAGAGCGACAAAGAGTCAGGAGTGGCAGAA 120
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 61 GACGCCTACATCGACACCGTTAAATCGTGTAAGAGCTACAAAGAATCAGGAGTGGCGGAG 120
Query 121 TTTTTATCAGCTACAGCGGCTGGATGGAACGCGAGGCTGATCGTTGAGACATGGTCACGC 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTTATCAGCTACGGCGGCTGGATGGAACGCGAGGCTGATCGTTGAGACATGGTCACGC 180
Query 181 GGCGATCCAATCACGACTAGCGTCGGACTCGCGGTTGCTGCAACTCACACGGGTGGAAGA 240
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 181 GGCGATCCAATCGCGACTAGCGTCGGACTCGCGGTTGCTGCAACTCACACGTGCGGAAGA 240
Query 241 CACGTGTGTATAGTACCTGACGAGCAATCTAAACTTGAGTACGTGTTGGCCATGAGAGGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CACGTGTGTATAGTACCTGACGAGCAATCTAAACTTGAGTACGTGTTGGCCATGAGAGGA 300
Query 301 TTTGTTACGACGGAG--G-------TTGTGGTGGTCGGAGAATCTGTTGAGAACACGATG 351
| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 301 GTCGTTACGACGGAGACGACGGAGGTTGTGGTGGTCGGAGAATCTGTTGAGAACACGATG 360
Query 352 GAGGAGTTTCCCGGTGTGGATTTCTTGGTGGTGGACTCGAAGCGGCGAGAGTTCGTCAGA 411
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 361 GAGGAGTTTCCCGGTGTGGATTTCTTGGTGGTGGACTCGAAACGGCGAGATTTCGTTAGA 420
Query 412 ACGCTGAGGTTTGCGAAGCTGAGCAACAAGGGTGCCGTTTTGGTGTGTAAAAACGCCATG 471
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 ACGCTAAGGTTTGCGAAACTGAGCAACAAGGGTGCCGTTTTGGTGTGTAAAAACGCCACG 480
Query 472 CATAGAGCAATCTCTGGTTTTAAATGGCACGATGTGTTGAAAAGAGGAACACGTGTGGTG 531
||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| ||
Sbjct 481 CATAGAGCAATCTCTGGGTTTAAATGGCACGATGTGTTGAAAGGAGGGACACGTGTAGTT 540
Query 532 AGATCCGTGTTTTTACCGGTTGGTAGTGGGTTGGATATTGTACACGTGGGAGCTACTGGT 591
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 541 AGATCCGTGTTTTTACCGGTTGGGAGTGGGTTGGATATCGTACACGTGGGAGCTACTGGT 600
Query 592 --C-------GTGGGGACTCGAGGAAT-CTTCGTAGCCGTTGGATTAGACACGTGGATCA 641
| ||| |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 601 GGCCACCAACGTGATGACTCGAGGA-TGCTTCGTAGCCGTTGGATTAGACACGTGGATCA 659
Query 642 TCTGTCGGGAGAGGAGCATTTGTTCAGACGCTAAATTTGGATTTCCTCTTTTACCCTTTT 701
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 660 TCTATCGGGAGAGGAGCATTTGTTCAGACGCTAAATTTGGATTTCCTTTTTTACCCTTTT 719
Query 702 TCCACCACTTCATT 715
||||||||||||||
Sbjct 720 TCCACCACTTCATT 733
> Ahg483674 jgi|Araly1|483674|fgenesh2_kg.4__2734__AT2G45380.2
Length=1231
Score = 63.9 bits (34), Expect = 2e-09
Identities = 37/38 (97%), Gaps = 1/38 (3%)
Strand=Plus/Minus
Query 787 TATGTATGTTGTGTTTTTACACGAATGTAAAAT-ATTG 823
||||||||||||||||||||||||||||||||| ||||
Sbjct 1209 TATGTATGTTGTGTTTTTACACGAATGTAAAATTATTG 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30650825268
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5