BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45360.1 Length=829 Score E Sequences producing significant alignments: (Bits) Value Ahg483673 jgi|Araly1|483673|fgenesh2_kg.4__2733__AT2G45360.1 1077 0.0 Ahg483674 jgi|Araly1|483674|fgenesh2_kg.4__2734__AT2G45380.2 63.9 2e-09 > Ahg483673 jgi|Araly1|483673|fgenesh2_kg.4__2733__AT2G45360.1 Length=788 Score = 1077 bits (583), Expect = 0.0 Identities = 687/734 (94%), Gaps = 20/734 (3%) Strand=Plus/Plus Query 1 ATCATCAAACTCCATTTCACTTTCACTATGAAGCTTGTCTGGTCGCCGGAAACTGCTTCT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATCATCAAACTCCATTTCACTTTCACTATGAAGCTTGTCTGGTCGCCGGAAACTGCTTCT 60 Query 61 GACGCCTACATCGACACCGTTAAATCGTGTAAGAGCGACAAAGAGTCAGGAGTGGCAGAA 120 |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| || Sbjct 61 GACGCCTACATCGACACCGTTAAATCGTGTAAGAGCTACAAAGAATCAGGAGTGGCGGAG 120 Query 121 TTTTTATCAGCTACAGCGGCTGGATGGAACGCGAGGCTGATCGTTGAGACATGGTCACGC 180 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTTTTATCAGCTACGGCGGCTGGATGGAACGCGAGGCTGATCGTTGAGACATGGTCACGC 180 Query 181 GGCGATCCAATCACGACTAGCGTCGGACTCGCGGTTGCTGCAACTCACACGGGTGGAAGA 240 |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 181 GGCGATCCAATCGCGACTAGCGTCGGACTCGCGGTTGCTGCAACTCACACGTGCGGAAGA 240 Query 241 CACGTGTGTATAGTACCTGACGAGCAATCTAAACTTGAGTACGTGTTGGCCATGAGAGGA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CACGTGTGTATAGTACCTGACGAGCAATCTAAACTTGAGTACGTGTTGGCCATGAGAGGA 300 Query 301 TTTGTTACGACGGAG--G-------TTGTGGTGGTCGGAGAATCTGTTGAGAACACGATG 351 | |||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 301 GTCGTTACGACGGAGACGACGGAGGTTGTGGTGGTCGGAGAATCTGTTGAGAACACGATG 360 Query 352 GAGGAGTTTCCCGGTGTGGATTTCTTGGTGGTGGACTCGAAGCGGCGAGAGTTCGTCAGA 411 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 361 GAGGAGTTTCCCGGTGTGGATTTCTTGGTGGTGGACTCGAAACGGCGAGATTTCGTTAGA 420 Query 412 ACGCTGAGGTTTGCGAAGCTGAGCAACAAGGGTGCCGTTTTGGTGTGTAAAAACGCCATG 471 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 421 ACGCTAAGGTTTGCGAAACTGAGCAACAAGGGTGCCGTTTTGGTGTGTAAAAACGCCACG 480 Query 472 CATAGAGCAATCTCTGGTTTTAAATGGCACGATGTGTTGAAAAGAGGAACACGTGTGGTG 531 ||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| || Sbjct 481 CATAGAGCAATCTCTGGGTTTAAATGGCACGATGTGTTGAAAGGAGGGACACGTGTAGTT 540 Query 532 AGATCCGTGTTTTTACCGGTTGGTAGTGGGTTGGATATTGTACACGTGGGAGCTACTGGT 591 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 541 AGATCCGTGTTTTTACCGGTTGGGAGTGGGTTGGATATCGTACACGTGGGAGCTACTGGT 600 Query 592 --C-------GTGGGGACTCGAGGAAT-CTTCGTAGCCGTTGGATTAGACACGTGGATCA 641 | ||| |||||||||| | |||||||||||||||||||||||||||||||| Sbjct 601 GGCCACCAACGTGATGACTCGAGGA-TGCTTCGTAGCCGTTGGATTAGACACGTGGATCA 659 Query 642 TCTGTCGGGAGAGGAGCATTTGTTCAGACGCTAAATTTGGATTTCCTCTTTTACCCTTTT 701 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 660 TCTATCGGGAGAGGAGCATTTGTTCAGACGCTAAATTTGGATTTCCTTTTTTACCCTTTT 719 Query 702 TCCACCACTTCATT 715 |||||||||||||| Sbjct 720 TCCACCACTTCATT 733 > Ahg483674 jgi|Araly1|483674|fgenesh2_kg.4__2734__AT2G45380.2 Length=1231 Score = 63.9 bits (34), Expect = 2e-09 Identities = 37/38 (97%), Gaps = 1/38 (3%) Strand=Plus/Minus Query 787 TATGTATGTTGTGTTTTTACACGAATGTAAAAT-ATTG 823 ||||||||||||||||||||||||||||||||| |||| Sbjct 1209 TATGTATGTTGTGTTTTTACACGAATGTAAAATTATTG 1172 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30650825268 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5