BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45380.1
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483674 jgi|Araly1|483674|fgenesh2_kg.4__2734__AT2G45380.2 922 0.0
Ahg487434 jgi|Araly1|487434|fgenesh2_kg.6__568__AT5G06260.1 412 3e-114
Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576 172 6e-42
Ahg487477 jgi|Araly1|487477|fgenesh2_kg.6__611__AT5G06670.1 113 3e-24
> Ahg483674 jgi|Araly1|483674|fgenesh2_kg.4__2734__AT2G45380.2
Length=1231
Score = 922 bits (499), Expect = 0.0
Identities = 598/645 (93%), Gaps = 10/645 (2%)
Strand=Plus/Plus
Query 961 GCTGAGAGGAAGATTCAGAATGTGAATCAAAGGAGTGATTTTAACCGAAGAGAGGGTACA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 GCTGAGAGGAAGATTCAGAATGTGAATCAAAGGAGTGATTTTAACCGAAGAGAGGGTACG 630
Query 1021 CAGTCTCGAGCTAACACATTCAGACATCACATCTCTAAGGTTACATATGGTGGCATACAT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 631 CAGTCTCGAGCTAACACATTCAGACATCACATCTCTAAGGTTACATATGGTGGCATAGAT 690
Query 1081 GGTGCGTACTATACATCTACTAGAACCAGAAGAAAAGACGGTGATGGAATGGTGGTTGAG 1140
||||| ||||||||||| ||||||||||||||||||| | |||||||||||||||| |||
Sbjct 691 GGTGCTTACTATACATCCACTAGAACCAGAAGAAAAGGCAGTGATGGAATGGTGGTAGAG 750
Query 1141 GAAAGCAAAGAAGCTGATAAGACTACCGGTGAAGCCACTCATAGGATCTCAAGAGGAATC 1200
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 751 GAAAGCAAAGAAGCCGATAAGACTACCGGTGAAGCCACTCATAGGATCTCCAGAGGAATC 810
Query 1201 AATGATAAGGGTCATTCAGTTACTAGGAAGCTCAACTCAAGTGGTGGTGTAGAGTCGACA 1260
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 811 AATGATAAGGGTCATTCAGTTACTAGGAAGCTTAACTCAAGTGGTGGTATAGAGTCAACA 870
Query 1261 CAGACTCTTCACAACCTCGATGAAGATGAATTAAGTGGCTTTGAAGAAGCATGGAAAGGC 1320
||||||||||||||||| ||| |||| ||||||||| ||||||| ||||||||||||| |
Sbjct 871 CAGACTCTTCACAACCTTGATAAAGACGAATTAAGTAGCTTTGAGGAAGCATGGAAAGAC 930
Query 1321 AATTCATCTCTTGGCAAGCATGAATTCACTGGCTCTGATAATAGTTTTGGAGGGTGGGTA 1380
|||| |||||||| ||| || |||||||||||||||||| |||||||||| |||||| |
Sbjct 931 AATTTATCTCTTGCCAAACAAGAATTCACTGGCTCTGATCATAGTTTTGGTGGGTGGCTT 990
Query 1381 CTTCCATCTCTTGACCAAATTCGTCGCCAAACAGACCAAAGTCAGACTGGTTCGAGCCGA 1440
|||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 991 CTTCCAGCTCTTGACCAAAGTGGTCGCCAAACAGACCAAAGTCAGACTGGTTCGAGCCGA 1050
Query 1441 TCTGCAACTGGAGCTAAGAAGGTTGTTCGAATCAACATTGAATGAATCATCAGAAAACCA 1500
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 TCTGCAACTAGAGCTAAGAAGGTTGTTCGAATCAACATTGAATGAATCATCAGAAAACCA 1110
Query 1501 TATATCAATCTATGTGCGTGTAAATCAAATAATTTTGTAGTTG--T-TTTGAAGTTGTAG 1557
| |||||||||||||| |||||||| |||||| ||| || || | |||||||||| |
Sbjct 1111 TGTATCAATCTATGTG--TGTAAATCTAATAATGTTGCAGATGCATCTTTGAAGTTGCA- 1167
Query 1558 TAATTGGCAATA-TTTTACATTCGTGTAAAAACACAACATACATA 1601
| | | ||||| ||||||||||||||||||||||||||||||||
Sbjct 1168 -A-T-GTCAATAATTTTACATTCGTGTAAAAACACAACATACATA 1209
Score = 87.9 bits (47), Expect = 2e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 578 AGAGTACTCTGCCTCTGGAATTTCTGGGTTCTTCTCGGATTCTCTCAAAG 627
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 287 AGAGTACTCTGTCTCTGGAATTTCTGGGTTCTTCTCGGATTCTCTCAAAG 336
> Ahg487434 jgi|Araly1|487434|fgenesh2_kg.6__568__AT5G06260.1
Length=1412
Score = 412 bits (223), Expect = 3e-114
Identities = 249/261 (95%), Gaps = 3/261 (1%)
Strand=Plus/Plus
Query 291 GGGAAATTCGAA-T--TCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTT 347
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GGGAAATTCGAATTCGTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTT 62
Query 348 TACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTTGTTTCCCTCGCTTCCAAGTCTCA 407
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 63 TACTCAGAAGAAGCTCGATGATCTCAAATCACTCTTCGTCTCCCTCGCTTCCAAGTCCCA 122
Query 408 CAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGTTC 467
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GAGCAATGACCAATACGTATCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGTTC 182
Query 468 TTTAGGAGAAAGGATCTTTGATATGGTTACTCAACACAGGAAAGATGATAAAATGACTTT 527
||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 183 TTTAGGAGAAAGGATGTTTGATATGGTCACTCAACACAGGAAAGATGATAAATTGACTTT 242
Query 528 TGAAGATCTTGTTATTGCTAA 548
|||||||||||||||||||||
Sbjct 243 TGAAGATCTTGTTATTGCTAA 263
Score = 58.4 bits (31), Expect = 2e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 546 TAAAATGACTTTTGAAGATCTTGTTATTGCTAAG 579
|||| |||||||||||||||||||||||||||||
Sbjct 231 TAAATTGACTTTTGAAGATCTTGTTATTGCTAAG 264
> Ahg349983 jgi|Araly1|349983|fgenesh1_pg.C_scaffold_6000576
Length=1314
Score = 172 bits (93), Expect = 6e-42
Identities = 108/115 (94%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 294 AAATTCGAATTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTTTACTCA 353
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 6 AAATTCGAATTCGTCTTCTGTTGATCATCACTTCACTTCTGCTTCCAGAGCTTTTACTCA 65
Query 354 GAAGAAGCTCGATGATCTCAAATCTCTCTT-TGTTTCCCTCGCTTCCAAGTCTCA 407
|||||||||||||||||||||||| ||||| | || || ||| ||||||||||||
Sbjct 66 GAAGAAGCTCGATGATCTCAAATCACTCTTCTCTTACC-TCGATTCCAAGTCTCA 119
> Ahg487477 jgi|Araly1|487477|fgenesh2_kg.6__611__AT5G06670.1
Length=2970
Score = 113 bits (61), Expect = 3e-24
Identities = 97/113 (86%), Gaps = 7/113 (6%)
Strand=Plus/Minus
Query 1 ATGTCTTTGGATAAAGTTTTGGAAGACGAGGTTGTTGAAGATACAGGGGAATCA-CAAGT 59
|||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| || |
Sbjct 112 ATGTCTCTGGATAAAGTTTT-GAAGACGAGGTTGTTGAAGATACAGGGGACTCAGCA--T 56
Query 60 CTTTAA-CTTGCTTAATCC-AGAATTTGTAGACTTTGATACTTGTTTAGATCC 110
| |||| ||| || || || || |||| ||||||| || ||||||||||||||
Sbjct 55 CCTTAAACTTACT-AAGCCCAGCATTTCTAGACTTCGACACTTGTTTAGATCC 4
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61668106655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5