BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45400.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483675 jgi|Araly1|483675|fgenesh2_kg.4__2735__AT2G45400.1 1762 0.0
> Ahg483675 jgi|Araly1|483675|fgenesh2_kg.4__2735__AT2G45400.1
Length=1207
Score = 1762 bits (954), Expect = 0.0
Identities = 1129/1209 (93%), Gaps = 30/1209 (2%)
Strand=Plus/Plus
Query 1 ACCagaagagagagaaagagacagagagaaaatggtgagagaagaacaagaagaagatga 60
||||||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||
Sbjct 1 ACCAGAAGAGAGAGAGAGAGAGAGAGAG-AAATGGTGAGAGAAG---AAGAAGAAGATG- 55
Query 61 caacaacaacaacaacaacGGAGGAGGAGAGAGAAAGCTGCTTGTGGCTGATGAAACGGT 120
|||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 56 -----ACAACAAC--GGA-GGAGGAGGAGAGAGAAAGCTGCTTGTGGCTGATGAAACGAT 107
Query 121 GCCGTCTTTGTTGGACGAAACGGGGTTGGTTTGTGTAACGGGAGGTTCTGGTTTCGTTGC 180
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 108 GCCGTCTTTGTTGGACGGAACGGGGTTGGTTTGTGTAACGGGAGGTACTGGTTTCGTTGC 167
Query 181 TTCTTGGCTCATCATGCGTCTCCTTCAACGTGGCTACTCCGTTCGGGCCACGGTTCGAAC 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 168 TTCTTGGCTCATCATGCGTCTCCTTCAACGTGGCTACTCCGTTCGAGCCACGGTTCGAAC 227
Query 241 CAACT-CAGAAGGGAATAAGAAAGATATAAGCTACCTAACCGAGCTACCATTTGCATCGG 299
||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 228 CAA-TCCAGAAGGGAATAAGAAAGATATAAGCTACCTAACCGAACTACCATTTGCATCGG 286
Query 300 AGAGGCTTCAAATATTCACCGCCGATCTCAACGAACCGGAGAGCTTCAAACCGGCAATCG 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 287 AGAGGCTTCAAATATTCACCGCCGATCTCAACGAACCGGAGAGCTTTAAACCGGCAATCG 346
Query 360 AAGGATGCAAAGCCGTATTCCACGTGGCACATCCTATGGACCCAAACAGCAACGAAACAG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 347 AAGGATGCAAAGCCGTATTCCACGTGGCACATCCTATGGACCCAAACAGCAACGAAACCG 406
Query 420 AAGAGACCGTTACGAAACGTACTGTGCAAGGTCTCATGGGGATACTAAAGTCGTGTTTGG 479
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 407 AAGAGACCGTTACGAAACGCACCGTGCAAGGTCTCATGGGGATACTAAAGTCGTGTTTGG 466
Query 480 ACGCTAAAACCGTGAAACGTTTTTTCTACACGTCAAGCGCCGTGACTGTTTTCTATAGCG 539
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 467 ACGCTAAAACCGTGAAACGTTTTTTCTACACGTCAAGCGCCGTTACCGTTTTCTATAGCG 526
Query 540 GTG-GAAACGGCGGTGGAGGAGGCGAAGTAGACGAGAGCGTTTGGAGCGACGTCGAGGTG 598
| | |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 527 G-GAAAAACGGCGGTGGAGGAGGAGAAGTAGACGAGAGCGTTTGGAGCGACGTGGAGGTG 585
Query 599 TTTAGGAATCAAAAGGAGAAGAGGGTGAGTAGCTCTTACGTCGTGTCGAAAATGGCGGCG 658
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 586 TTTAGGAATCAAAAGGAGAAGAGAGTGAGTAGCTCTTACGTCGTGTCGAAAATGGCGGCG 645
Query 659 GAGACGGCGGCGCTTGAGTTCGGTGGGAAGAATGGGTTAGAGGTTGTGACGCTCGTTATT 718
||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 646 GAGACGGCGGCACTTGAGTTCGGCGGGAAGAATGGATTGGAGGTTGTGACGCTCGTTATT 705
Query 719 CCTCTCGTCGTCGGACCTTTTATATCTTCGTCGTTGCCTTCCTCCGTCTTCATATCTCTC 778
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 706 CCTCTTGTCGTCGGACCTTTTATATCTCCGTCGTTGCCTTCCTCCGTCTTCATATCTCTC 765
Query 779 GCCATGCTCTTTGGAAATTACAAGGAGAAGTATTTGTTTGATACTTACAATATGGTGCAT 838
||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 766 GCCATGCTCTTTGGAAATTACAAAGAGAAGTATTTATTCGATACTTACAACATGGTGCAT 825
Query 839 ATTGATGATGTGGCAAGGGCGATGATATTTCTATTAGAAAAGCCAGTTGCAAAAGGTAGA 898
|||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 826 ATTGATGATGTGGCGAGGGCGATGATATTACTATTAGAAAAGCCAGTAGCGAAAGGTAGA 885
Query 899 TATATTTGTTCGTCGGTGGAGATGAAGATCGATGAGGTCTTTGAGTTTTTGTCTACGAAA 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TATATTTGTTCGTCGGTGGAGATGAAGATCGATGAGGTCTTTGAGTTTTTGTCTACGAAA 945
Query 959 TTTCCTCAGTTTCAGCTACCTTCAATAGATTTGAATAAATATAAAGTAGAGAAGAGGATG 1018
|||||||||||||||||||||||||| |||||||| || || ||||||||||||||||||
Sbjct 946 TTTCCTCAGTTTCAGCTACCTTCAATTGATTTGAAGAATTACAAAGTAGAGAAGAGGATG 1005
Query 1019 GGTCTTTCATCGAAGAAGCTGAAAAGTGCCGGGTTCGAATTCAAGTATGGAGCCGAGGAA 1078
|||| || ||||||||||||| ||||| |||||||| |||||||||||||| ||||||
Sbjct 1006 AGTCTCTCGTCGAAGAAGCTGAGAAGTGAAGGGTTCGAGTTCAAGTATGGAGCTGAGGAA 1065
Query 1079 ATATTCAGTGGAGCTATAAGGAGCTGTCAAGCAAGGGGATTTCTTTAAATTCTTATGGGA 1138
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1066 ATATTCGGTGGAGCTATAAGGAGCTGCCAAGCGAGGGGATTTCTTTAAATTCT---G--- 1119
Query 1139 TTTTTGTGTTAAAATTTGTATATGAATTGAAAATATGTTTTTTCTTTATTGGCCATTTCC 1198
| || | |||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1120 T----GT-T-AAAATTTGTATATGAATTGAAAATATCTTTTT-CTTTATTGGCCATTCCC 1172
Query 1199 GTTTTGTAA 1207
|||||||||
Sbjct 1173 GTTTTGTAA 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5