BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45410.1
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902576 jgi|Araly1|902576|Al_scaffold_0004_3226 911 0.0
Ahg935409 jgi|Araly1|935409|scaffold_403397.1 355 2e-97
> Ahg902576 jgi|Araly1|902576|Al_scaffold_0004_3226
Length=579
Score = 911 bits (493), Expect = 0.0
Identities = 551/579 (95%), Gaps = 3/579 (1%)
Strand=Plus/Plus
Query 9 ATGATGACCGGAAACTTGAACGGCGGTGGAAGAGGAGGA---GAAGGACCATGCGGGGCT 65
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGATGACCGCAAACTTGAACGGCGGTGGAAGAGGAGGAGGGGAAGGACCATGCGGGGCG 60
Query 66 TGCAAGTTCTTGAGAAGAAAGTGTGTGAAAGGGTGCGTTTTCGCTCCTTATTTCGATGCA 125
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCAAGTTCTTGAGGAGAAAGTGTGTGAAAGGGTGCGTTTTCGCTCCTTATTTCGATGCA 120
Query 126 GAGCAAGGAACTGCGAGATTTGCAGCAGTTCACAAAGTATTTGGGGCCAGCAATGCCTCT 185
|| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 121 GATCAAGGAACTGCGAGATTTGCAGCGGTTCACAAAGTGTTTGGAGCCAGCAATGCCTCT 180
Query 186 AAGATGTTACTGAGATTGCCTCTGCACAAGAGACTTGATGCAGTCGTCACGCTCTGTTAC 245
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 181 AAGATGTTACTGAGATTGCCTTTGCACAAGCGACTTGATGCAGTCGTCACGCTCTGTCAC 240
Query 246 GAGGCCATGGCAAGGATTCGTGATCCTGTCTATGGCTCTGTTGGCCATCTCTTCTCTCTT 305
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGGCCATGGCAAGGCTTCGTGATCCTGTCTATGGCTCTGTTGGCCATCTCTTCTCTCTT 300
Query 306 CAACACCAGGTGATGAATCTACAAGCAGAGCTTGCTCATGTTCAAGCTCGTCTTTCAACA 365
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 CAACACCAGGTGATGAATCTACAAGCAGAGCTTGCTCATGTTCAAGCTCTTCTTTCAACA 360
Query 366 ATTCAGCGGTTTCCTCTACAGTCGCCACAACAAATGCAGCCACCGTCTTTTGATCCTGCG 425
||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 361 TTTCAGCGTTTTCCTCTACAATCGCCACAACAAATGCAGCCACCGCCTTTTGATCTTGCG 420
Query 426 CATAACAATGAATATGCGATGGAACCGAGTAACTTGGATAGTGTGTGGGGGGAAGAACAT 485
||||||||||||||| |||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 421 CATAACAATGAATATACGATGGAACCGAGTAATTTGGATGGTGTGTGGGAAGAAGAACAT 480
Query 486 TTACTTCAAGATGGAACTGGAGATGGGGATTTCCAAGAACTGGCGTCGCAGTTCGTCTCA 545
||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 481 TTACTTCAAGATGGAACTGAAGATGAGGATTTCCATGAACTGGCGTCGCAGTTCGTCTCA 540
Query 546 AGGTATTTACCGGCGGTCAAACTTCCGGCTTGCACTTAG 584
|||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGTATTTACCGGCGGTCAAACTTCCGGCTTGCACTTAG 579
> Ahg935409 jgi|Araly1|935409|scaffold_403397.1
Length=292
Score = 355 bits (192), Expect = 2e-97
Identities = 224/240 (93%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 77 GAGAAGAAAGTGTGTGAAAGGGTGCGTTTTCGCTCCTTATTTCGATGCAGAGCAAGGAAC 136
||| ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 35 GAGGAGAAAGTGTGTGAAAGGGTGCATTTTCGCTCCTTGTTTCGATCCAGAGCAAGGAAC 94
Query 137 TGCGAGATTTGCAGCAGTTCACAAAGTATTTGGGGCCAGCAATGCCTCTAAGATGTTACT 196
||||||||||||||||||||||||||||||||| ||||| |||||||||| ||| |||||
Sbjct 95 TGCGAGATTTGCAGCAGTTCACAAAGTATTTGGAGCCAGTAATGCCTCTATGATATTACT 154
Query 197 GAGATTGCCTCTGCACAAGAGACTTGATGCAGTCGTCACGCTCTGTTACGAGGCCATGGC 256
|||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 155 GAGATTGCCTTTGCACAAGCGACTTGATGCAGTCGTCACCCTCTGTTACGAGGCCATGGC 214
Query 257 AAGGATTCGTGATCCTGTCTATGGCTCTGTTGGCCATCTCTTCTCTCTTCAACACCAGGT 316
|||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||| ||||
Sbjct 215 AAGGCTTCGTGGTCCTGTCTATGGCTCTGTTGGCCATCTCTTCCCTCCTCAACACTAGGT 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27486623157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5