BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45420.1
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483677 jgi|Araly1|483677|fgenesh2_kg.4__2737__AT2G45420.1 1515 0.0
> Ahg483677 jgi|Araly1|483677|fgenesh2_kg.4__2737__AT2G45420.1
Length=1223
Score = 1515 bits (820), Expect = 0.0
Identities = 962/1026 (94%), Gaps = 27/1026 (3%)
Strand=Plus/Plus
Query 212 GGGAGATAGAGTAACAACTCGTTAATTGGGGGGTGGCCGGTCATGAGCGGTGGTGGGAAC 271
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 GGGAGATAGAGTAACAACTCGTTAATTGTGGGGTGGCCGGTCATGAGCGGTGGTGGGAAC 239
Query 272 ACAATCACTGCCGTGGGAGGCggaggtggtggttgtggtggaggaggcagcagtggggga 331
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 ACAGTCACTGCCGTGGGAGGCGGAGGTGGTGGTTGTGGTGGAGGAGGCAGCACTGGGGGG 299
Query 332 ggaggaagtagtggcggtggtggtggtgggCCATGTGGTGCTTGTAAGTTTCTAAGGAGG 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGAGGAAGTAGTGGCGGTGGTGGTGGTGGGCCATGTGGTGCTTGTAAGTTTCTAAGGAGG 359
Query 392 AAGTGTGTGCCGGGATGTATATTTGCACCGTACTTTGACTCCGAGCAAGGATCGGCTTAT 451
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 AAGTGTGTGCCGGGATGTATATTTGCACCGTACTTTGACTCCGAGCAAGGCTCGGCTTAT 419
Query 452 TTTGCGGCGGTGCATAAAGTGTTCGGAGCCAGTAACGTCTCGAAGCTTCTATTACACATA 511
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 TTTGCGGCGGTGCATAAAGTGTTCGGAGCCAGTAACGTCTCGAAGCTTCTCTTACACATA 479
Query 512 CCGGTTCATCGAAGGTCCGATGCTGTCGTAACAATTTGCTATGAAGCTCAGGCTAGGATA 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCGGTTCATCGAAGGTCCGATGCTGTCGTAACAATTTGCTATGAAGCTCAGGCTAGGATA 539
Query 572 AGGGATCCTATCTACGGTTGCGTCGCTCACATCTTTGCTCTTCAGCAACAGGTGGTGAAT 631
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGGGATCCTATCTATGGTTGCGTCGCTCACATCTTTGCTCTTCAGCAACAGGTGGTGAAT 599
Query 632 CTACAGGCAGAAGTTTCTTACTTACAAGCCCATTTGGCATCACTAGAGCTACCTCAACCG 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTACAGGCAGAAGTTTCTTACTTACAAGCCCATTTGGCATCACTAGAGCTACCTCAACCG 659
Query 692 CAAACGCGGCCACAGCCTATGCCGCAACCGCAACCGCTCTTTTTCACTCCTCCTCCCCCT 751
||||||||||||||||||||||||||||||| | | ||||| ||||||||||| |||
Sbjct 660 CAAACGCGGCCACAGCCTATGCCGCAACCGCT-C---T-TTTTT-ACTCCTCCTCCGCCT 713
Query 752 CTTGCCATAACCGATTTACCTGCATCAGTCTCACCCTTGCCCTCAACCTATGACCTAGCA 811
||||||||||| |||||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 714 CTTGCCATAACTGATTTACCTGCATCAGTCTCACCCTTACCCTCAACTTACGATCTAGCA 773
Query 812 TCCATCTTCGATCAAACGACGTCTTCTTCGGCATGGGCCACGCAACAACGAAGATTCATT 871
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 774 TCCATCTTCGATCAAACGACGTCTTCTTCGGCGTGGGCCACGCAACAACGAAGATTCATT 833
Query 872 GATCCACGTCACCAATACGGTGTATCATCGTCTTCCTCTTCTGTCGCCGTGGGGCTCGGT 931
||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 834 GATCCACGTCACCAACACGGTGTATCATCGTCGTCTTCTTCTGTCGCCGCGGGGCTCGGT 893
Query 932 GGTGAAAACAGTCATGACCTCCAAGCATTAGCACATGAACTCCTCCATAGACAAGGATCT 991
|||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 894 GGTGGAAACAGTCAGGACCTTCAAGCATTAGCACATGAACTCCTCCATAGACAAGGATCT 953
Query 992 CCTCCCCCGGCAGCTACCGACCACTCGCCGTCTCGAACTATGTCTAGATGAGTTGGTTTT 1051
||||| ||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 954 CCTCCACCGGCCGCTACAGACGATTCGCCGTCTCGAACTATGTCTAGATGAGTTGGTTTT 1013
Query 1052 GATCGA-TACATCTCCGCATT-GTTATTAGGAAAATTAAATTACAACTCAATAAGATTTA 1109
|||| | ||||||||| | || |||||||||||||||||||||| |||||||||| ||||
Sbjct 1014 GATCAAATACATCTCCCCCTTTGTTATTAGGAAAATTAAATTACTACTCAATAAGGTTTA 1073
Query 1110 ATTTTCTTTGAA------A-G---TACTGATTATAAATTTTCTAACATTTATATT-GTAT 1158
|||||||| ||| | | || |||||||||||||||||||||||| ||| ||||
Sbjct 1074 ATTTTCTTGGAATGTTGTAAGGAATATTGATTATAAATTTTCTAACATTTAAATTTGTAT 1133
Query 1159 TACTACTGTAttttcacttc-ttttgactgacgagtattttctttcttctttgcctttac 1217
||||||||||||||| |||| |||| ||||||||||||| ||| ||| | |||||||
Sbjct 1134 TACTACTGTATTTTCCCTTCGTTTT--CTGACGAGTATTT-CTT-CTT-T--GCCTTTAA 1186
Query 1218 tttttt 1223
||||||
Sbjct 1187 TTTTTT 1192
Score = 272 bits (147), Expect = 4e-72
Identities = 169/179 (94%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 4 AAAGAGAAAATAGAGAGAGATCGttttttttttGTTAGCTTTGTCGTCGCTTGGCTTTAA 63
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 AAAGAGAAAATAGAGAGAGATCGTTTGTTTTTTGTTAGCTTTGTCGTCGCGTGGCTTTAA 60
Query 64 AGAC-TTTCTTCTCTATACTCTCCTCTTACCAAACCCTAATTCTCCTCTCTTGATTCCCG 122
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGACTTTTCTTCTCTGTACTCTCCTCTTACCAAACCCTAATTCTCCTCTCTTGATTCCCT 120
Query 123 TTTCTCAAATCTTCCTCTCATCTTCAAA---CAATACCAAACATAATCTCCATATTTTT 178
||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||
Sbjct 121 TTTCTCAAATCTTCCTCTCTTCTTCAAATTACAACACCAAACATAATCTCCATATTTTT 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49597915017
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5