BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45430.1
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935500 jgi|Araly1|935500|scaffold_403488.1 1596 0.0
Ahg486561 jgi|Araly1|486561|fgenesh2_kg.5__2553__AT3G60870.1 248 8e-65
> Ahg935500 jgi|Araly1|935500|scaffold_403488.1
Length=999
Score = 1596 bits (864), Expect = 0.0
Identities = 958/1002 (96%), Gaps = 12/1002 (1%)
Strand=Plus/Plus
Query 268 TTTGCTTTTTATATCAAGTAATGGATCAGGTCTCTCGCTCTCTTCCTCCACCTTTTCTCT 327
||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTTACTTTTGA-ATCAAGAAATGGATCAGGTCTCTCGCTCTCTTCCTCCACCTTTTCTCT 60
Query 328 CAAGAGATCTCCATCTTCACCCACACCATCAATTCcagcatcagcagcagcagcagcaAC 387
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 61 CAAGAGATCTCCATCTTCACCCGCACCATCAATTCCAGCAT---CAGCAGCAGCAGCAAC 117
Query 388 AGAATCACGGCCACGATATAGACCAGCACCGAATCGGTGGGCTAAAACGTGACCGAGATG 447
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |
Sbjct 118 AGAATCACGGCCACGATATCGACCAGCACCGAATCGGTGGCCTAAAACGTGACCGGGACG 177
Query 448 CTGATATCGATCCCAACGAGCACTCTTCAGCCGGAAAAGATCAAAGTACTCCTGGCTCCG 507
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 178 CTGATATCGATCCCAACGAGCACTCTTCAGCCGGAAAAGATCAAAACACTCCTGGCTCCG 237
Query 508 GTGGAGAAAGCGGCGGCGGAGGAGGAGGAGATAATCACATCACGAGAAGGCCACGTGGCA 567
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 238 GTGGAGAAAGCGGCGGCGGAGGAGGAGGAGACAATCATATCACGAGAAGGCCACGTGGCA 297
Query 568 GACCAGCGGGATCTAAGAACAAACCAAAACCGCCAATCATCATCACTCGAGACAGCGCAA 627
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 298 GACCAGCGGGATCCAAGAACAAACCAAAACCACCAATCATCATCACTCGAGACAGCGCAA 357
Query 628 ACGCTCTCAAATCTCATGTCATGGAAGTAGCAAACGGATGTGACGTCATGGAAAGTGTCA 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACGCTCTCAAATCTCATGTCATGGAAGTAGCAAACGGATGTGACGTCATGGAAAGTGTCA 417
Query 688 CCGTCTTCGCTCGCCGTCGCCAACGTGGCATCTGCGTTTTGAGCGGAAACGGCGCCGTTA 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCGTCTTCGCTCGCCGTCGCCAACGTGGCATCTGCGTTTTGAGCGGAAACGGCGCCGTTA 477
Query 748 CCAACGTTACCATAAGACAACCAGCTTCAGTACCTGGTGGTGGCTCATCTGTCGTTAACT 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CCAACGTTACCATAAGACAACCAGCTTCAGTACCTGGTGGTGGCTCATCTGTCGTTAACT 537
Query 808 TACACGGACGTTTCGAGATTCTTTCTCTCTCGGGATCATTCCTTCCTCCTCCGGCTCCAC 867
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 538 TACACGGACGTTTCGAGATTCTTTCTCTCTCGGGATCTTTCCTTCCCCCTCCGGCTCCAC 597
Query 868 CAGCTGCGTCAGGTCTAACGATTTACTTAGCCGGTGGTCAGGGACAGGTTGTTGGAGGAA 927
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 598 CAGCTGCGTCAGGACTAACGATTTACTTAGCCGGTGGTCAGGGACAGGTCGTTGGAGGAA 657
Query 928 GCGTGGTTGGTCCACTCATGGCTTCAGGACCTGTAGTGATTATGGCAGCTTCGTTTGGAA 987
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 658 GCGTGGTTGGTCCACTCATGGCTTCAGGACCAGTAGTGATTATGGCTGCTTCGTTTGGGA 717
Query 988 ACGCTGCGTATGAGAGACTGCCGTTGGAGGAAGACGATCAAGAAGAGCAAACAGCTGGAG 1047
||||||||||||||||| ||||||| |||||||| ||||| ||||||||||| |||||||
Sbjct 718 ACGCTGCGTATGAGAGATTGCCGTTAGAGGAAGATGATCAGGAAGAGCAAACGGCTGGAG 777
Query 1048 CGGTTGCTAATAATATCGATGGAAACGCAACAATGGGTGGTGGAACGCAAACGCAAACTC 1107
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 778 CGGTTGCCAATAATATCGATGGAAACGCAACGATGGGTGGTGGGACGCAAACGCAGACTC 837
Query 1108 AGACGCAGCAGCAACAGCAACAACA------GTTGATGCAAGATCCGACGTCGTTTATAC 1161
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 838 AGACGCAGCAGCAGCAGCAACAACAACAACAGTTGATGCAAGATCCGACGTCGTTTATAC 897
Query 1162 AAGGGTTGCCTCCGAATCTTATGAATTCTGTTCAATTGCCAGCTGAAGCTTATTGGGGAA 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AAGGGTTGCCTCCGAATCTTATGAATTCTGTTCAATTGCCAGCTGAAGCTTATTGGGGAA 957
Query 1222 CTCCGAGACCATCTTTCTAAATCGCG-AAGAAAAAA-CAAGT 1261
|||||||||||||||||||||||||| || |||||| |||||
Sbjct 958 CTCCGAGACCATCTTTCTAAATCGCGGAAAAAAAAAACAAGT 999
> Ahg486561 jgi|Araly1|486561|fgenesh2_kg.5__2553__AT3G60870.1
Length=792
Score = 248 bits (134), Expect = 8e-65
Identities = 361/466 (77%), Gaps = 34/466 (7%)
Strand=Plus/Plus
Query 551 GAGAAGGCCACGTGGCAGACCAGCGGGATCTAAGAACAAACCAAAACCGCCAATCATCA- 609
||| || |||||||| ||||| || || || || |||||||| ||| | || ||||| |
Sbjct 171 GAGGAGACCACGTGGAAGACCCGCAGGTTCCAAAAACAAACCCAAAGCACCGATCAT-AG 229
Query 610 TCACTCGAGACAGC-GCAAACG-CTCTCAAAT-CTCATGTCATGGAAG-TAGCAAACGGA 665
||||||| ||| | || |||| || ||| || | || ||||||| || || | |||||
Sbjct 230 TCACTCGCGAC-TCTGCGAACGCCT-TCAGATGC-CACGTCATGG-AGATAACCAACGGC 285
Query 666 TGTGACGTCATGGAAAGTGTCA-CCGTCTTCGCTCGCCGTCGCCAACGTGGCATCTGCGT 724
|| || || |||||||| | | ||||||||||| | || || || |||||| | |||||
Sbjct 286 TGCGATGTAATGGAAAG-CTTAGCCGTCTTCGCTAGACGCCGTCAGCGTGGCGTTTGCGT 344
Query 725 TTTGAGC-GGAAACGGCGCCGTTACCAACGTTACCATAAGACAACCAGCTTCAGTACCTG 783
|||| | ||||||||||||||||| ||||| || | |||| | | | || |
Sbjct 345 CTTGA-CTGGAAACGGCGCCGTTACAAACGTCACTGTTAGAC-A--A----C----CC-G 391
Query 784 GTGGTGGCTCATCTGTCGTTAACTTACACGGACGTTTCGAGATTCTTTCTCTCTCGGGAT 843
| || || | ||||||| ||||||||||| ||||||||||| ||||||||||| |
Sbjct 392 GCGGAGG-----C-GTCGTTAGTTTACACGGACGGTTCGAGATTCTCTCTCTCTCGGGCT 445
Query 844 CATTCCTTCCTCCTCCGGCTCCACCAGCTGCGTCAGGTCTAACGATTTACTTAGCCGGTG 903
| || |||||||| ||||||||||| |||||| | ||| ||||| |||||||||||||||
Sbjct 446 CGTTTCTTCCTCCACCGGCTCCACCGGCTGCGACTGGTTTAACGGTTTACTTAGCCGGTG 505
Query 904 GTCAGGGACAGGTTG-TTGGAGGAAGCGTGGTTGGTCCACTCATGGCTTCAGGACCTGTA 962
|||| || || | || | ||||| || |||| || || || ||||||||||| || ||
Sbjct 506 GTCAAGGTCAAG-TGATCGGAGGCAGTTTGGTGGGACCGCTTATGGCTTCAGGTCCGGTG 564
Query 963 GTGATTATGGCAGCTTCGTTTGGAAACGCTGCGTATGAGAGACTGC 1008
||||||||||||||||||||||||||||| || || ||||| ||||
Sbjct 565 GTGATTATGGCAGCTTCGTTTGGAAACGCAGCTTACGAGAGGCTGC 610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5