BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45440.1 Length=1700 Score E Sequences producing significant alignments: (Bits) Value Ahg483681 jgi|Araly1|483681|fgenesh2_kg.4__2741__AT2G45440.1 2161 0.0 Ahg486562 jgi|Araly1|486562|fgenesh2_kg.5__2554__AT3G60880.2 1035 0.0 > Ahg483681 jgi|Araly1|483681|fgenesh2_kg.4__2741__AT2G45440.1 Length=1495 Score = 2161 bits (1170), Expect = 0.0 Identities = 1401/1507 (93%), Gaps = 38/1507 (3%) Strand=Plus/Plus Query 216 TCTCTCGCCGCTTTATCCTTGTTACAAATCC-CATCGAT-C-T-TT-TCGGAATCTTCCC 270 |||||||||||||| || |||| |||||||| |||| || | | || |||||||||| || Sbjct 1 TCTCTCGCCGCTTTGTCTTTGTAACAAATCCACATCAATCCATCTTATCGGAATCTTTCC 60 Query 271 TCATTATGCTCAGCCACCATTACCAGAGCTCCATTGTTTCAGTTCTCCGTTCAACGATTA 330 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 61 TCATTATGCTCAGCCACCATTACCAGAGCTCCATTGTTTCAGTTCTCTTTTCAACGATTA 120 Query 331 TCGGAATTATTCACAACACTATTAGTATCA-C--CGTCGCCAACCGATTTTGATTACCAG 387 |||||| |||| | ||||||||||||||| | |||||||||| | ||||||||||||| Sbjct 121 TCGGAAGTATT--C-ACACTATTAGTATCATCATCGTCGCCAACTGGTTTTGATTACCAG 177 Query 388 CTTTGGTGACG---------AC-A--GTCGTGATTAAGGAGGTTTTGGTAAATTTCTTCG 435 ||| ||||||| || | ||||||||||||||||||||||||||| |||| Sbjct 178 CTTCGGTGACGTTTTAATACACGACGGTCGTGATTAAGGAGGTTTTGGTAAATATCTT-- 235 Query 436 TTCCT-GTTTGTTTTCAAAGATGGCTGCTTTGAAAGGTTATGGCTTGTGTTCTATGGACT 494 || | || |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 236 TT--TGGTATGTTTTCAAAGATGGCTGCTTTGAAAGGTTATGGATTGTGTTCTATGGACT 293 Query 495 CTGCTCTTCAATTCCCCTGTCCTAAGCTATTCAATAGCTACAAGAGAAGGAGCTCGAAAT 554 ||||||| |||||||||||||| ||| ||| |||| ||||||||||||||||| |||||| Sbjct 294 CTGCTCTACAATTCCCCTGTCCAAAGTTATCCAATGGCTACAAGAGAAGGAGCCCGAAAT 353 Query 555 GGGTCTCTCCCAAAGCAGCTGTTGTACCCAATTTCCATCTCCCAATGCGCAGCTTGGAGG 614 |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 354 GGGTCTCTCCAAAAGCAGCTGTTGTGCCCAATTTTCATCTCCCAATGCGCAGCTTGGAGG 413 Query 615 TTAAAAACAGGACAAACACAGACGACATTAAAGCTCTACGTGTGATCACAGCTATCAAAA 674 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 414 TTAAAAACAGGACAAACACAGATGACATTAAAGCTCTACGTGTGATCACTGCTATCAAAA 473 Query 675 CACCGTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTGGTCAACATTC 734 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 474 CACCGTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTAGTGAACATTC 533 Query 735 AGATACAAAACGGTGCTGAAGGTGTCATTGTTGGTGGTACAACTGGTGAAGGACAACTGA 794 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 534 AGATACAAAACGGCGCTGAAGGTGTCATTGTTGGGGGTACAACTGGTGAAGGACAATTGA 593 Query 795 TGAGCTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCA 854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 TGAGCTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCA 653 Query 855 TCAAAGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCGACTGAAC 914 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 654 TCAAAGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCAACTGAAC 713 Query 915 AAGGATTCGCGGTTGGAATGCATGCTGCTCTTCATATAAACCCTTACTATGGCAAGACTT 974 |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 714 AAGGATTCGCTGTTGGAATGCACGCTGCTCTTCACATAAACCCTTACTATGGCAAGACTT 773 Query 975 CTATTGAGGGACTGATTGCACATTTCCAGTCTGTTCTTCATATGGGACCGACGATTATAT 1034 | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 774 CGATTGAGGGTCTGATTGCACATTTCCAATCTGTTCTTCATATGGGACCGACGATTATAT 833 Query 1035 ACAATGTGCCTGGTCGAACAGGGCAAGATATACCGCCTCGTGCCATCTTCAAACTTTCTC 1094 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 834 ACAATGTGCCTGGTCGAACAGGGCAAGATATACCGCCTCGTGCCATCTTCAAACTTTCTC 893 Query 1095 AGAATCCGAATTTAGCTGGTGTGAAGGAATGTGTTGGGAACAAGCGAGTCGAAGAGTACA 1154 ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 894 AGAATCCTAATTTAGCCGGTGTGAAGGAATGTGTTGGGAACAAGCGGGTCGAAGAGTACA 953 Query 1155 CTGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCCAGATGGG 1214 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 954 CTGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCAAGATGGG 1013 Query 1215 ATTATGGAGCAACAGGAGTTATATCAGTTACTAGTAATTTAGTTCCGGGTTTGATGAGGA 1274 ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| Sbjct 1014 ATTATGGAGCAACAGGAGTTATATCGGTTACTAGTAATTTAGTGCCAGGTTTGATGAGGA 1073 Query 1275 AGTTGATGTTTGAAGGTAGGAATTCATCTTTGAACTCAAAGCTTCTACCTTTGATGGCTT 1334 | |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1074 AATTGATGTTTGAAGGAAGGAATTCATCTTTGAACTCAAAGCTACTACCTTTAATGGCTT 1133 Query 1335 GGCTGTTCCACGAGCCAAACCCGATTGGAATCAACACTGCTTTGGCTCAGCTTGGAGTTT 1394 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1134 GGCTATTCCACGAGCCAAACCCGATTGGAATTAACACTGCTTTGGCTCAGCTTGGAGTGT 1193 Query 1395 CGAGGCCGGTTTTTAGGTTACCATATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTG 1454 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1194 CGAGGCCAGTTTTTAGGTTACCGTATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTG 1253 Query 1455 TGAAACTGGTGAAGGAGATTGGACGAGAGCATTTTGTGGGTGAGAAAGATGTTCAGGCTC 1514 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1254 TGAAACTGGTGAAGGAGATTGGACGAGAGCATTTTGTTGGTGAGAAAGATGTTCAGGCTC 1313 Query 1515 TTGATGATGATGATTTTATCCTTATCGGTCGATATTAGCAT-ACttttttttttttaatt 1573 ||||||| ||||||||||||||||| ||||||||||||||| || ||||||||| |||| Sbjct 1314 TTGATGACGATGATTTTATCCTTATTGGTCGATATTAGCATTACCTTTTTTTTTCGAATT 1373 Query 1574 tttggttcctttttgtttGGTGTTAATGAAGAAGAGATGGTTCTAT-CAT-T-TG-GTTT 1629 ||||||| ||||| |||||||||||| ||||||||| |||||||| | | | | |||| Sbjct 1374 TTTGGTTTCTTTT-GTTTGGTGTTAAAAAAGAAGAGACGGTTCTATACTTCTATCTGTTT 1432 Query 1630 TATGTAGCTGATGAATGAATGAAAACTCAAGGAATGATTTCATCATATTTCTTAGCTTGT 1689 ||||||||||||||||||| || |||| |||||||||||||||||||||||| | ||| Sbjct 1433 TATGTAGCTGATGAATGAA--AA--CTCACGGAATGATTTCATCATATTTCTTATCATGT 1488 Query 1690 TTTGGTC 1696 ||||||| Sbjct 1489 TTTGGTC 1495 > Ahg486562 jgi|Araly1|486562|fgenesh2_kg.5__2554__AT3G60880.2 Length=1439 Score = 1035 bits (560), Expect = 0.0 Identities = 939/1121 (84%), Gaps = 30/1121 (3%) Strand=Plus/Plus Query 447 TTTCAAAGATGGCTGCTTTGAAAGGTTATGGCTTGTGT-TCTATGGACTCTGCTCTTCAA 505 ||| ||||||||| |||||||||||| | |||||| | || || |||||||| | || | Sbjct 175 TTTAAAAGATGGCAGCTTTGAAAGGTCACGGCTTG-ATCTCCATTGACTCTGC-CCTCCA 232 Query 506 TTCCCCTGTC-CT-A-AGCTATTCAATAGCTACAAGAGAAGGAGCT-CGAAATGGGTCTC 561 || || || || | | | ||| | |||||||||||||||| | ||||||||||||| Sbjct 233 TTTTCC--TCGCTCACATCAATTGGAGAGCTACAAGAGAAGGA-ATGCGAAATGGGTCTC 289 Query 562 TCCCAAAGCAGCTGTTGTACCCAATTTCCATCTCCCAATGCGCAGCT-TGGAGGTTAAAA 620 ||| ||||||||||||||||| || |||||||| ||||||||||| | | |||| ||||| Sbjct 290 TCCAAAAGCAGCTGTTGTACCTAACTTCCATCTTCCAATGCGCAG-TCTCGAGGATAAAA 348 Query 621 ACAGGACAAACACAGACGACATTAAAG-CTC-TACGTGTGATCACAGCTATCAAAACACC 678 ||||||||||||||||||||| ||| | | | || | ||||||||||| || || ||||| Sbjct 349 ACAGGACAAACACAGACGACA-TAAGGTCCCTTA-GAGTGATCACAGCCATTAAGACACC 406 Query 679 GTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTGGTCAACATTCAGAT 738 |||||||||||||||||||||||| || |||| ||||||||||| ||||||| ||||| Sbjct 407 GTATCTACCTGATGGAAGATTCGATCTCCAAGCGTACGATGACTTAGTCAACACGCAGAT 466 Query 739 ACAAAACGGTGCTGAAGGTGTCATTGTTGGTGGTACAACTGGTGAAGGACAACTGATGAG 798 | ||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||| Sbjct 467 AGAAAACGGTGCTGAAGGTGTGATTGTTGGTGGTACAACCGGTGAAGGCCAATTGATGAG 526 Query 799 CTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCATCAA 858 |||||| || || || |||||||||||||||||||| || |||||||||||||| ||||| Sbjct 527 CTGGGATGAGCATATAATGCTTATAGGCCATACCGTAAATTGTTTTGGCGGAAGAATCAA 586 Query 859 AGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCGACTGAACAAGG 918 |||||||||||||||||||||||| |||||||| ||||| || || || ||||| ||||| Sbjct 587 AGTCATTGGAAACACTGGAAGCAACTCGACTAGGGAAGCTATACATGCCACTGAGCAAGG 646 Query 919 ATTCGCGGTTGGAATGCATGCTGCTCTTCATATAAACCCTTACTATGGCAAGACTTCTAT 978 |||||| || |||||||| | || || || || |||||||||||||| || || || || Sbjct 647 ATTCGCTGTGGGAATGCACGGGGCACTGCACATTAACCCTTACTATGGAAAAACATCCAT 706 Query 979 TG-AGGGACTGATTGCACATTTCCAGTCTGTTCTTCATATGGGACCGACGATTATATACA 1037 || ||| | ||| || ||||| || | ||||||||||||||||||||||||||||||| Sbjct 707 TGAAGGCA-TGACCGCGCATTTTCAAACCGTTCTTCATATGGGACCGACGATTATATACA 765 Query 1038 ATGTGCCTGGTCGAAC-AGGGCAAGATATACCGCCTC-GTGCCATCTTCAAACTTTCTCA 1095 ||||||| |||||||| || ||||||||||| || | | | ||||| ||||| |||| Sbjct 766 ATGTGCCAGGTCGAACGAGT-CAAGATATACCTCCCCAG-GTTATCTTTAAACTCTCTCG 823 Query 1096 GAATCCGAATTTAGCTGGTGTGAAGGAATGTGTTGGGAACAAGCGAGTCGAAGAGTACAC 1155 ||| || ||| | ||||| || |||||||| ||||| || || ||||| |||||||| || Sbjct 824 GAACCCTAATATGGCTGGGGTTAAGGAATGCGTTGGTAATAACCGAGTTGAAGAGTATAC 883 Query 1156 TGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCCAGATGGGA 1215 ||||||||| |||| ||||||||||| ||||||||| |||| |||||||| |||||||| Sbjct 884 TGAGAATGGAATTGTAGTGTGGAGTGGAAATGATGATCAGTGCCATGATTCAAGATGGGA 943 Query 1216 TTATGGAGCAACAGGAGTTATATCAGTTACTAGTAATTTAGTTCCGGGTTTGATGAGGAA 1275 | | || ||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| Sbjct 944 TCACGGCGCAACTGGAGTGATATCGGTTACTAGCAATTTAGTTCCGGGTTTGATGAGGAA 1003 Query 1276 GTTGATGTTTGAAGGTAGGAATTCATCTTTGAACTCAAAGCTTCTACCTTTGATGGCTTG 1335 ||| |||||||||||||| || ||| | |||||||||||||| || ||| | |||| ||| Sbjct 1004 GTTAATGTTTGAAGGTAGAAACTCAGCGTTGAACTCAAAGCTACTTCCTCTAATGGATTG 1063 Query 1336 GCTGTTCCACGAGCCAAACCCGATTGGAATCAACACTGCTTTGGCTCAGCTT-GGAGTTT 1394 ||| ||||| || || || |||||||| | || ||||||||||||||| || |||||| Sbjct 1064 GCTATTCCAAGAACCCAATCCGATTGGTGTTAATACTGCTTTGGCTCAG-TTAGGAGTTG 1122 Query 1395 CGAGGCCGGTTTTTAGGTTACCATATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTG 1454 | ||||| |||||| ||||||| ||||| |||||||| ||||| || ||| ||||||| | Sbjct 1123 CTAGGCCTGTTTTTCGGTTACCTTATGTGCCATTGCCTCTGTCCAAAAGGATTGAGTTCG 1182 Query 1455 TGAAA-CTGGTGAAGGAGATTGGACGAGAGCATTTTGTGGGTGAGAAAGATGTTCAGGCT 1513 | || ||||||||||| || ||| | ||||||||||| || || | ||||||||||| | Sbjct 1183 T-AAGGCTGGTGAAGGAAATCGGAAGGGAGCATTTTGTAGGAGACAGAGATGTTCAGG-T 1240 Query 1514 -CTTGATGATGATGATTTTATCCTTA-TCGGTCGATATTAG 1552 |||||||||||||| || ||| ||| |||||||||||||| Sbjct 1241 ACTTGATGATGATGACTTCATC-TTAATCGGTCGATATTAG 1280 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63763070130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5