BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45440.1
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483681 jgi|Araly1|483681|fgenesh2_kg.4__2741__AT2G45440.1 2161 0.0
Ahg486562 jgi|Araly1|486562|fgenesh2_kg.5__2554__AT3G60880.2 1035 0.0
> Ahg483681 jgi|Araly1|483681|fgenesh2_kg.4__2741__AT2G45440.1
Length=1495
Score = 2161 bits (1170), Expect = 0.0
Identities = 1401/1507 (93%), Gaps = 38/1507 (3%)
Strand=Plus/Plus
Query 216 TCTCTCGCCGCTTTATCCTTGTTACAAATCC-CATCGAT-C-T-TT-TCGGAATCTTCCC 270
|||||||||||||| || |||| |||||||| |||| || | | || |||||||||| ||
Sbjct 1 TCTCTCGCCGCTTTGTCTTTGTAACAAATCCACATCAATCCATCTTATCGGAATCTTTCC 60
Query 271 TCATTATGCTCAGCCACCATTACCAGAGCTCCATTGTTTCAGTTCTCCGTTCAACGATTA 330
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 TCATTATGCTCAGCCACCATTACCAGAGCTCCATTGTTTCAGTTCTCTTTTCAACGATTA 120
Query 331 TCGGAATTATTCACAACACTATTAGTATCA-C--CGTCGCCAACCGATTTTGATTACCAG 387
|||||| |||| | ||||||||||||||| | |||||||||| | |||||||||||||
Sbjct 121 TCGGAAGTATT--C-ACACTATTAGTATCATCATCGTCGCCAACTGGTTTTGATTACCAG 177
Query 388 CTTTGGTGACG---------AC-A--GTCGTGATTAAGGAGGTTTTGGTAAATTTCTTCG 435
||| ||||||| || | ||||||||||||||||||||||||||| ||||
Sbjct 178 CTTCGGTGACGTTTTAATACACGACGGTCGTGATTAAGGAGGTTTTGGTAAATATCTT-- 235
Query 436 TTCCT-GTTTGTTTTCAAAGATGGCTGCTTTGAAAGGTTATGGCTTGTGTTCTATGGACT 494
|| | || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 236 TT--TGGTATGTTTTCAAAGATGGCTGCTTTGAAAGGTTATGGATTGTGTTCTATGGACT 293
Query 495 CTGCTCTTCAATTCCCCTGTCCTAAGCTATTCAATAGCTACAAGAGAAGGAGCTCGAAAT 554
||||||| |||||||||||||| ||| ||| |||| ||||||||||||||||| ||||||
Sbjct 294 CTGCTCTACAATTCCCCTGTCCAAAGTTATCCAATGGCTACAAGAGAAGGAGCCCGAAAT 353
Query 555 GGGTCTCTCCCAAAGCAGCTGTTGTACCCAATTTCCATCTCCCAATGCGCAGCTTGGAGG 614
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 354 GGGTCTCTCCAAAAGCAGCTGTTGTGCCCAATTTTCATCTCCCAATGCGCAGCTTGGAGG 413
Query 615 TTAAAAACAGGACAAACACAGACGACATTAAAGCTCTACGTGTGATCACAGCTATCAAAA 674
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 414 TTAAAAACAGGACAAACACAGATGACATTAAAGCTCTACGTGTGATCACTGCTATCAAAA 473
Query 675 CACCGTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTGGTCAACATTC 734
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 474 CACCGTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTAGTGAACATTC 533
Query 735 AGATACAAAACGGTGCTGAAGGTGTCATTGTTGGTGGTACAACTGGTGAAGGACAACTGA 794
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 534 AGATACAAAACGGCGCTGAAGGTGTCATTGTTGGGGGTACAACTGGTGAAGGACAATTGA 593
Query 795 TGAGCTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TGAGCTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCA 653
Query 855 TCAAAGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCGACTGAAC 914
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 654 TCAAAGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCAACTGAAC 713
Query 915 AAGGATTCGCGGTTGGAATGCATGCTGCTCTTCATATAAACCCTTACTATGGCAAGACTT 974
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 714 AAGGATTCGCTGTTGGAATGCACGCTGCTCTTCACATAAACCCTTACTATGGCAAGACTT 773
Query 975 CTATTGAGGGACTGATTGCACATTTCCAGTCTGTTCTTCATATGGGACCGACGATTATAT 1034
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 774 CGATTGAGGGTCTGATTGCACATTTCCAATCTGTTCTTCATATGGGACCGACGATTATAT 833
Query 1035 ACAATGTGCCTGGTCGAACAGGGCAAGATATACCGCCTCGTGCCATCTTCAAACTTTCTC 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 ACAATGTGCCTGGTCGAACAGGGCAAGATATACCGCCTCGTGCCATCTTCAAACTTTCTC 893
Query 1095 AGAATCCGAATTTAGCTGGTGTGAAGGAATGTGTTGGGAACAAGCGAGTCGAAGAGTACA 1154
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 894 AGAATCCTAATTTAGCCGGTGTGAAGGAATGTGTTGGGAACAAGCGGGTCGAAGAGTACA 953
Query 1155 CTGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCCAGATGGG 1214
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 954 CTGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCAAGATGGG 1013
Query 1215 ATTATGGAGCAACAGGAGTTATATCAGTTACTAGTAATTTAGTTCCGGGTTTGATGAGGA 1274
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1014 ATTATGGAGCAACAGGAGTTATATCGGTTACTAGTAATTTAGTGCCAGGTTTGATGAGGA 1073
Query 1275 AGTTGATGTTTGAAGGTAGGAATTCATCTTTGAACTCAAAGCTTCTACCTTTGATGGCTT 1334
| |||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1074 AATTGATGTTTGAAGGAAGGAATTCATCTTTGAACTCAAAGCTACTACCTTTAATGGCTT 1133
Query 1335 GGCTGTTCCACGAGCCAAACCCGATTGGAATCAACACTGCTTTGGCTCAGCTTGGAGTTT 1394
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1134 GGCTATTCCACGAGCCAAACCCGATTGGAATTAACACTGCTTTGGCTCAGCTTGGAGTGT 1193
Query 1395 CGAGGCCGGTTTTTAGGTTACCATATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTG 1454
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1194 CGAGGCCAGTTTTTAGGTTACCGTATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTG 1253
Query 1455 TGAAACTGGTGAAGGAGATTGGACGAGAGCATTTTGTGGGTGAGAAAGATGTTCAGGCTC 1514
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1254 TGAAACTGGTGAAGGAGATTGGACGAGAGCATTTTGTTGGTGAGAAAGATGTTCAGGCTC 1313
Query 1515 TTGATGATGATGATTTTATCCTTATCGGTCGATATTAGCAT-ACttttttttttttaatt 1573
||||||| ||||||||||||||||| ||||||||||||||| || ||||||||| ||||
Sbjct 1314 TTGATGACGATGATTTTATCCTTATTGGTCGATATTAGCATTACCTTTTTTTTTCGAATT 1373
Query 1574 tttggttcctttttgtttGGTGTTAATGAAGAAGAGATGGTTCTAT-CAT-T-TG-GTTT 1629
||||||| ||||| |||||||||||| ||||||||| |||||||| | | | | ||||
Sbjct 1374 TTTGGTTTCTTTT-GTTTGGTGTTAAAAAAGAAGAGACGGTTCTATACTTCTATCTGTTT 1432
Query 1630 TATGTAGCTGATGAATGAATGAAAACTCAAGGAATGATTTCATCATATTTCTTAGCTTGT 1689
||||||||||||||||||| || |||| |||||||||||||||||||||||| | |||
Sbjct 1433 TATGTAGCTGATGAATGAA--AA--CTCACGGAATGATTTCATCATATTTCTTATCATGT 1488
Query 1690 TTTGGTC 1696
|||||||
Sbjct 1489 TTTGGTC 1495
> Ahg486562 jgi|Araly1|486562|fgenesh2_kg.5__2554__AT3G60880.2
Length=1439
Score = 1035 bits (560), Expect = 0.0
Identities = 939/1121 (84%), Gaps = 30/1121 (3%)
Strand=Plus/Plus
Query 447 TTTCAAAGATGGCTGCTTTGAAAGGTTATGGCTTGTGT-TCTATGGACTCTGCTCTTCAA 505
||| ||||||||| |||||||||||| | |||||| | || || |||||||| | || |
Sbjct 175 TTTAAAAGATGGCAGCTTTGAAAGGTCACGGCTTG-ATCTCCATTGACTCTGC-CCTCCA 232
Query 506 TTCCCCTGTC-CT-A-AGCTATTCAATAGCTACAAGAGAAGGAGCT-CGAAATGGGTCTC 561
|| || || || | | | ||| | |||||||||||||||| | |||||||||||||
Sbjct 233 TTTTCC--TCGCTCACATCAATTGGAGAGCTACAAGAGAAGGA-ATGCGAAATGGGTCTC 289
Query 562 TCCCAAAGCAGCTGTTGTACCCAATTTCCATCTCCCAATGCGCAGCT-TGGAGGTTAAAA 620
||| ||||||||||||||||| || |||||||| ||||||||||| | | |||| |||||
Sbjct 290 TCCAAAAGCAGCTGTTGTACCTAACTTCCATCTTCCAATGCGCAG-TCTCGAGGATAAAA 348
Query 621 ACAGGACAAACACAGACGACATTAAAG-CTC-TACGTGTGATCACAGCTATCAAAACACC 678
||||||||||||||||||||| ||| | | | || | ||||||||||| || || |||||
Sbjct 349 ACAGGACAAACACAGACGACA-TAAGGTCCCTTA-GAGTGATCACAGCCATTAAGACACC 406
Query 679 GTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTGGTCAACATTCAGAT 738
|||||||||||||||||||||||| || |||| ||||||||||| ||||||| |||||
Sbjct 407 GTATCTACCTGATGGAAGATTCGATCTCCAAGCGTACGATGACTTAGTCAACACGCAGAT 466
Query 739 ACAAAACGGTGCTGAAGGTGTCATTGTTGGTGGTACAACTGGTGAAGGACAACTGATGAG 798
| ||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||||||
Sbjct 467 AGAAAACGGTGCTGAAGGTGTGATTGTTGGTGGTACAACCGGTGAAGGCCAATTGATGAG 526
Query 799 CTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCATCAA 858
|||||| || || || |||||||||||||||||||| || |||||||||||||| |||||
Sbjct 527 CTGGGATGAGCATATAATGCTTATAGGCCATACCGTAAATTGTTTTGGCGGAAGAATCAA 586
Query 859 AGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCGACTGAACAAGG 918
|||||||||||||||||||||||| |||||||| ||||| || || || ||||| |||||
Sbjct 587 AGTCATTGGAAACACTGGAAGCAACTCGACTAGGGAAGCTATACATGCCACTGAGCAAGG 646
Query 919 ATTCGCGGTTGGAATGCATGCTGCTCTTCATATAAACCCTTACTATGGCAAGACTTCTAT 978
|||||| || |||||||| | || || || || |||||||||||||| || || || ||
Sbjct 647 ATTCGCTGTGGGAATGCACGGGGCACTGCACATTAACCCTTACTATGGAAAAACATCCAT 706
Query 979 TG-AGGGACTGATTGCACATTTCCAGTCTGTTCTTCATATGGGACCGACGATTATATACA 1037
|| ||| | ||| || ||||| || | |||||||||||||||||||||||||||||||
Sbjct 707 TGAAGGCA-TGACCGCGCATTTTCAAACCGTTCTTCATATGGGACCGACGATTATATACA 765
Query 1038 ATGTGCCTGGTCGAAC-AGGGCAAGATATACCGCCTC-GTGCCATCTTCAAACTTTCTCA 1095
||||||| |||||||| || ||||||||||| || | | | ||||| ||||| ||||
Sbjct 766 ATGTGCCAGGTCGAACGAGT-CAAGATATACCTCCCCAG-GTTATCTTTAAACTCTCTCG 823
Query 1096 GAATCCGAATTTAGCTGGTGTGAAGGAATGTGTTGGGAACAAGCGAGTCGAAGAGTACAC 1155
||| || ||| | ||||| || |||||||| ||||| || || ||||| |||||||| ||
Sbjct 824 GAACCCTAATATGGCTGGGGTTAAGGAATGCGTTGGTAATAACCGAGTTGAAGAGTATAC 883
Query 1156 TGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCCAGATGGGA 1215
||||||||| |||| ||||||||||| ||||||||| |||| |||||||| ||||||||
Sbjct 884 TGAGAATGGAATTGTAGTGTGGAGTGGAAATGATGATCAGTGCCATGATTCAAGATGGGA 943
Query 1216 TTATGGAGCAACAGGAGTTATATCAGTTACTAGTAATTTAGTTCCGGGTTTGATGAGGAA 1275
| | || ||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 944 TCACGGCGCAACTGGAGTGATATCGGTTACTAGCAATTTAGTTCCGGGTTTGATGAGGAA 1003
Query 1276 GTTGATGTTTGAAGGTAGGAATTCATCTTTGAACTCAAAGCTTCTACCTTTGATGGCTTG 1335
||| |||||||||||||| || ||| | |||||||||||||| || ||| | |||| |||
Sbjct 1004 GTTAATGTTTGAAGGTAGAAACTCAGCGTTGAACTCAAAGCTACTTCCTCTAATGGATTG 1063
Query 1336 GCTGTTCCACGAGCCAAACCCGATTGGAATCAACACTGCTTTGGCTCAGCTT-GGAGTTT 1394
||| ||||| || || || |||||||| | || ||||||||||||||| || ||||||
Sbjct 1064 GCTATTCCAAGAACCCAATCCGATTGGTGTTAATACTGCTTTGGCTCAG-TTAGGAGTTG 1122
Query 1395 CGAGGCCGGTTTTTAGGTTACCATATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTG 1454
| ||||| |||||| ||||||| ||||| |||||||| ||||| || ||| ||||||| |
Sbjct 1123 CTAGGCCTGTTTTTCGGTTACCTTATGTGCCATTGCCTCTGTCCAAAAGGATTGAGTTCG 1182
Query 1455 TGAAA-CTGGTGAAGGAGATTGGACGAGAGCATTTTGTGGGTGAGAAAGATGTTCAGGCT 1513
| || ||||||||||| || ||| | ||||||||||| || || | ||||||||||| |
Sbjct 1183 T-AAGGCTGGTGAAGGAAATCGGAAGGGAGCATTTTGTAGGAGACAGAGATGTTCAGG-T 1240
Query 1514 -CTTGATGATGATGATTTTATCCTTA-TCGGTCGATATTAG 1552
|||||||||||||| || ||| ||| ||||||||||||||
Sbjct 1241 ACTTGATGATGATGACTTCATC-TTAATCGGTCGATATTAG 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5