BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45450.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322199 jgi|Araly1|322199|fgenesh1_pm.C_scaffold_4002256 464 4e-130
> Ahg322199 jgi|Araly1|322199|fgenesh1_pm.C_scaffold_4002256
Length=279
Score = 464 bits (251), Expect = 4e-130
Identities = 271/280 (97%), Gaps = 3/280 (1%)
Strand=Plus/Plus
Query 199 ATGTGTTTAAGTTCTTCAGAAACATTTTCAGACACACCCACGAGATTAGTTTTATACCTC 258
|||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||
Sbjct 1 ATGTGTTTGAGTTCTTCAGAACCATTTTCAGACAGACCCACGAGATTAGTTTTGTACCTC 60
Query 259 AAAACACAAAGTCACGTTCGTATCCCTCGTCTCTCCAGGAGGAGACGGATGTGGCGGGAA 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAACACAAAGTCACGTTCGTATCCCTCGTCTCTCCAGGAGGAGACGGATGTGGCGGGAA 120
Query 319 GAGAAA-AAGATGGAGATGATCAATCTAAAGCTTTACGTGGAGAATCAAAACATCATAAG 377
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GA-AAAGAAGATGGAGATGATCAATCTAAAGCTTTACGTGGAGAATCAAAACATCATAAG 179
Query 378 AGAGAACGAGAAACTTAAGAAGAAAGctcttcttcttcaccaagaaaacaaaactctctt 437
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 AGAGAACGAGAAACTTAGGAAGAAAGCTCTTCTTCTTCACCAAGAAAACAAAGCTCTCTT 239
Query 438 ctctctgcttcagaccaaaaaactctcctctGT-CCATAA 476
||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 CTCTCTGCTTCAGACCAAAAAACTCTCCTCTGTTCCATAA 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5