BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45460.3
Length=3117
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483683 jgi|Araly1|483683|fgenesh2_kg.4__2743__AT2G45460.1 4591 0.0
> Ahg483683 jgi|Araly1|483683|fgenesh2_kg.4__2743__AT2G45460.1
Length=2946
Score = 4591 bits (2486), Expect = 0.0
Identities = 2782/2924 (95%), Gaps = 23/2924 (1%)
Strand=Plus/Plus
Query 152 ATGGCGTCTACAGCGGCTGAACAAGACGAGAGAAAAATTGTATCGGTAGCATCGAACGCT 211
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGTCTACGGCGGCTGAACAAGACGAGAGAAAAATTGCATCGGTAGCATCGAACGCG 60
Query 212 AGCCAGGACATCAAAACGGCTGCTGCTGCATCGCGGATCAGTAGCCAAAACGGCGCTTCT 271
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 61 AGCCAGGACATCAAAACGGCTGCTGCTGCATCGCGGATCAATAGCCAAAACGGCACTTCT 120
Query 272 CCATCTCCGTCGCTCAACTCCAAGGACTTCATCGTCTCAGCAGCAGCTAACATCGCTTCT 331
|||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||
Sbjct 121 CCATCTCCATCGCTCAACTCCAAGGATTTCATCGTCTCCTCCGCAGCTAACATCGCTTCT 180
Query 332 CAGCCGTTACAGAACTACGATTCGAACGTTTGGGGAGTCCTCACCGCAATTTCAAGCAAT 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGCCGTTACAGAACTACGATTCGAACGTTTGGGGAGTCCTCACCGCAATTTCAAGCAAT 240
Query 392 GCTCGCAAACGCCGGCAGGGCATAAATATACTTTTGACTTCTGATGAGCATTGCTTAGGA 451
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 241 GCTCGCAAACGCCGGCAGGGCATAAACATACTTTTGACTTCTGATGAGCACTGCTTAGGA 300
Query 452 CGGCTGCCATGTCACGCTAGTTATCAGGTAGAATCAAATGCAATTAGCGGGAATCACTGT 511
||||| ||||||||||| || |||||| |||||||||||||||| ||||||||||| |||
Sbjct 301 CGGCTTCCATGTCACGCCAGCTATCAGATAGAATCAAATGCAATAAGCGGGAATCATTGT 360
Query 512 AAGGTATTCCGTAAGCCGGTAACAGGCGGTGATGGGGATGATGTAACTGTCTTTATGGTA 571
||||||| |||||||| ||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 361 AAGGTATACCGTAAGCGGGTCACAGGCGGTGATGGGGATGATGTATCTGTCTTTGTGGTA 420
Query 572 GACACAAGCACAAATGGTACGTTTCTCAATTGGGAAAGGTTAACAAAGAATGGCCCTGAA 631
||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 421 GACACAAGCACAAATGGTACGTTTCTCAATTGGGAGAGGTTAAAAAAGAACGGCCCTGAA 480
Query 632 GTCAGGGTTCAACACGGTGACATCATATCGCTTGCTGTTCCTCCAGAGCATGAGAAGGCA 691
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTCAGGGTTCAGCACGGTGACATCATATCGCTTGCTGTTCCTCCAGAGCATGAGAAGGCA 540
Query 692 TTTGCATTTGTATACCGCGAAGTACTTGGTAATAATCCTGCGCTGTCCTGCATGAACAGA 751
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 541 TTTGCATTTGTATACCGCGAAGTACTTGGTAATAATCCTGCACTTTCCTGCATGAACAGA 600
Query 752 AAAAGAAAAGCAGAGGATACTACTTGTGAAATTAAGAGGCAGAAGGGCATAGGCATCAGT 811
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 601 AAAAGAAAAGCAGAGGATACTACATGTGAAATTAAGAGGCAGAAGGGCATAGGGATTGGT 660
Query 812 GGTCCCAATGGTCCAATATCTTTGGATGATTTTAAGAGCCTCCAGCGTTCAAACACAGAA 871
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 661 GGTCCCAATGGTCCAATATCTCTAGATGATTTTAAGAGCCTCCAGCGTTCAAACACAGAA 720
Query 872 CTGAGGAAGCAATTAGAAGCCCAGGTGCTTACCATTGACACTCTGCGTAATGAGTCCCGC 931
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTGAGGAAGCAATTAGAAGCACAGGTGCTTACCATTGACACTCTGCGTAATGAGTCCCGC 780
Query 932 TCAATTGTTGAGCACCATGAAAGTGATTATTTGAGTATCTCTACTGAAATATCTTTGCAT 991
|||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 781 TCAATTGTGGAGCACCATGAAAGTGATTATTTGAGTATCTTTACTGATATAACTTTGCAT 840
Query 992 TTGCAGGAAATAAAACAGATAAAAGAATCCACTGCAAAATCATTTCATAATGAACTGATT 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTGCAGGAAATAAAACAGATAAAAGAATCCACTGCAAAATCATTTCATAATGAACTGATT 900
Query 1052 GAGCTACGTGATCAATTAGATACGAAGCAGAAGGAACTGGCGCAGGTCAACAAATTATCA 1111
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 GAGCTGCGTGATCAATTAGATACTAAGCAGAAGGAACTGGCGCAGGTCAACAAATTATCA 960
Query 1112 GCTGAACAGAAGAATTCCATAGATGAACTTGGTGAGAGAGTAAGCGCTTCTTTGCAAACT 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 961 GCTGAACAGAAGAATTCCATAGATGAACTTGGTGAGAGAGTAAGCGCTTCTTTGCAATCT 1020
Query 1172 CTCAGTGAAGCAAATGAAGTAATTCAAAGTCAAAAGGCATCTATAGCTGAACTGAAGACG 1231
|||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 1021 CTCAGTGAAGCAAATGAAGTAATTAAAAGTCAAAAGGCATCCATAGCTGAGCTGAAGACA 1080
Query 1232 GGGTTGGATGAAGAGAGAAACCAAAGAAGAGAGGAAAGAGAAACTGCCATTGCTGAACTC 1291
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1081 GGGTTGGATGAAGAGAGAAATCAAAGAAGAGAGGAAAGAGAAACTGCCGTTGCTGAACTC 1140
Query 1292 AAAGCTGCGATACATAGATGCCAAATTGAAGCTCAGGAAGAATTGAAAAGATTTTCTGAT 1351
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAGCTGCGATGCATAGATGCCAAATTGAAGCTCAGGAAGAATTGAAAAGATTTTCTGAT 1200
Query 1352 GCTGCTATGAGACACGAGAGGGAACAACAAGAAGTAATCAACAAAATGAAGGAGTCAGAG 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1201 GCTGCTATGAGACACGAGAGGGAACAACAAGAAGTAATCAACAAAATGAAGGAATCAGAG 1260
Query 1412 AAAGAAAAGTCAATGCAAGTCGAAACATTGATGTCAAAATTGGAAGATACAAGGCAGAGG 1471
||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 1261 AAAGAAAGGTCAATGCAAGTGGAAACATTGATGTCGAAATTGGAAGATACGAGGCAGAGG 1320
Query 1472 TTGGTGTG-TTCTGAGAATAGAAACCGTCTGCTAGAAGCTCAAGTTTCTGAGGAGCAGCT 1530
||||| | |||||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1321 TTGGT-CGATTCTGACAATAGAAACCGTCAGCTAGAAGCTCAAGTGTCTGAGGAGCAGCT 1379
Query 1531 TGCTTTTGCTGATGCACaaaaaaaaCTGGAAGAACTTGACCTTCAAGTAAAAAGACTGCA 1590
||||| |||| |||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1380 TGCTTCTGCTAATGCACAAAAAAAATTGGAAGAACTTGACCTTGAAATAAAAAGACTGCA 1439
Query 1591 AAAGGATCTGGACAGTGAAAAGCAGGCAGCTCGAGAAGAAGCATGGGCGAAAGTGTCTGC 1650
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1440 AAAGGATCTGGACAGTG-AAA--AGGCAGCTCGAGAAGAAGCATGGGCGAAAGTGTCTGC 1496
Query 1651 CTTAGAACTAGAGATAAGTGCTGCTGTTCGAGACCTTGACGTCGAAAGACAGAGACACCG 1710
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CTTAGAGCTAGAGATAAGTGCTGCTGTTCGAGACCTTGACGTCGAAAGACAGAGACACCG 1556
Query 1711 TGGTGCAAGGGAAAGAATCATGCTCCGTGAAACTCAGATGCGGGCATTTTATTCTACGAC 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TGGTGCAAGGGAAAGAATCATGCTCCGTGAAACTCAGATGCGGGCATTTTATTCTACGAC 1616
Query 1771 TGAGGAGATCTCGGCTTTGTTTGCAAAGCAGCAGGAACAGCTCAAGACTATGCAGAGAAC 1830
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TGAGGAGATCTCGGCTCTGTTTGCAAAGCAGCAGGAACAGCTCAAGACTATGCAGAGAAC 1676
Query 1831 TCTAGAAGATGAGGATAATTGTGACAATACTTCACTAGATATTGATCTTAATCCAATAAA 1890
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TCTGGAAGATGAGGATAATTGTGACAATACTTCACTAGATATTGATCTTAATCCAATAAA 1736
Query 1891 CAGAAGTCCCAACAGAGCTAATACGCAGGGAGATAAAAGAGCAACTTCCCATTTGAATTT 1950
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1737 CAGAAGTCCCAACAGAGCTAATACGCAGGAAGATAAAAGAGCAACTTACCATTTGAATTG 1796
Query 1951 TGCTGCCAGGGCAAGCTCGTCCACTTCAGGGCAAAGGTCTACCAGAAATGAAGTTGTGGA 2010
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1797 TGCTGCCAGGGCAAGCTCGTCCACTTCAGGGCAAAGGTCTACCAGAAATGAAGTTTTGGA 1856
Query 2011 TACGTCATGTGAGGATGCAGATGCTACCCAAAAGCATGATTGTGAAATCATGAGTCAGGA 2070
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 TACGTCATGTGAAGATGCAGATGCTACCCAAAAGCATGATTGTGAAATCATGAGTCAGGA 1916
Query 2071 AGGCCAAAACACCCAAGAAGCAGAGTATCCAAGCTCTGATAAAGTT-GCAAAGGGTGGCT 2129
||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 1917 AGGCCAAAACACCCAAGAAGCAGAGTATCCAAGCTCTGA-AAAGGTCGCAAAGGGTGGCT 1975
Query 2130 TTGGCTCAGATATAGAAGGTATTGGTACAGCACCCACTTCGGGAACAGACCCTGTAGGAA 2189
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TTGGCTCAGATATAGAAGGTGTTGGTACAGCACCCACTTCGGGAACAGACCCTGTAGGAA 2035
Query 2190 CAGAGCAAGTCAATGAAACTCAAAGTCCAGGAAATGATTATGAGAGAAATGATCATCTGA 2249
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2036 CAGAGCAAGTTAATGAAACTCAAAGTCCAGGAAATGATTATGAGAGAAATGGTCATCTGA 2095
Query 2250 GGAAGTCTATTATTTTAGCTGGTGATACAATGCAAATAGATTGTGAAACTCAGGTACATG 2309
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 GGAACTCGCTTATTTTAGCTGGTGATACAATGCAAATAGATTGTGAAACTCAGGTACATG 2155
Query 2310 AAAGTGTTCAGATTGAAGGAGCTGTTCTCTTGTTAAGGAACCCGAACGATCGAAGGGATA 2369
|||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2156 AAAGTGTTCAGAATGATGGAGCTGTTCTCTTGTTAAGGAACCCGAACGATCAAAGGGATA 2215
Query 2370 CTCAAGACATAGAGGGAGTAGGTACTATAGGGACGTCGGATCTTCTAGCTTCTGAAGTTG 2429
| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2216 CGCAAGACACAGAGGGAGTAGGCACTATAAGGACGTCGGATCTTCTAGCTTCTGAAGTTG 2275
Query 2430 CGGGGAGTTGGGCTAATAGCACGAATCCTTCTGTACATGGAGAAAACGAAACTGAAAGAA 2489
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2276 CGGGGAGTTGGGCTAATAGCACGGCTCCTTCTGTACATGGAGAAAACGAAACTGAAAGAA 2335
Query 2490 GTAGAGAAGATGAAGAGAGTCAGACTCAAAAAATCAAGGAAGTGACCATAGTACAGGATT 2549
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2336 GTAGAGAAGATGAAGAGAGTCAGACTCAAAAAATCAAGGAAGTGACCGTAGTACAGGATT 2395
Query 2550 CTGCTGGTCAGATAGGGGAAAGTCAAACTAAACCGACAAGTCCAGGGGTCCTGGTCACTA 2609
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2396 CTGCTGGTCAGATAGGCGAAAGCCAAACTAAACCGACAAGTCCAGGGGTCCTGGTGACTA 2455
Query 2610 ACAAGGATGATGC--AG----AGCGTGGAGTTATTAACGAGCCAGTGGGGATCACTGATC 2663
| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||
Sbjct 2456 AGAAGGATGATGCTGAGCCTGAGCGTGGAGTTGTTAACGAGCCAGTGGGGATCATTGATC 2515
Query 2664 AAGGGAAGATAAAACATGGTACTCGTTCGGACTCAGAGACAGAGAGTTGTTCTGACTCTG 2723
||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 2516 AAGGGAAGATAAAACATGGTACTGGTTCGGACTCAGAGACAGAGAGTTGTTCGGAATCTG 2575
Query 2724 ATGATGATCATGAGAAGGAAAAACACAATCCTGTCTCAGATTCTGATACAGAGGGTTCTG 2783
||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2576 ATGTTGATCATGAGAATGAAAAACACAATCCTGTCTCAGACTCTGATACAGAGGGTTCTG 2635
Query 2784 ATATGAATGATGACAAGGGATCACTCTCGTCGGATCCTGATACAGAAAGAA-GCCATGAA 2842
|||||||||||||||||||||||||||| | |||||| ||||||||| ||| ||||||||
Sbjct 2636 ATATGAATGATGACAAGGGATCACTCTCTTTGGATCCCGATACAGAA-GAAAGCCATGAA 2694
Query 2843 GTTGATGGGGATCAGAAGAAACAAGTGGACACCATGGACGAAGACGATAAAGCTACTTAG 2902
| ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 2695 GCTGATGGGGATCAGAA-A--CAAGTGGACACCATGGATGAAGACGATAAAGCTACTTAG 2751
Query 2903 CATGATTCCCGTTTCAAGATCTTATTATGAGT-AACATG-TTCATGATTTTACAGTCTTT 2960
|| | || || |||||| |||| ||| | ||| |||| | ||||||||||||||||||||
Sbjct 2752 CAAGGTTTCCTTTTCAAAATCTCATTCTCAGTTAACA-GATTCATGATTTTACAGTCTTT 2810
Query 2961 TCCAAATCCCTCTTTGTTTTGTATTCGCACACACCGGGCTCATTTTGTCGTTTACATTAG 3020
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 2811 -CCAAATCCCTCTTTGTTTTGTATTCGTACACACCGGGCTCATTTTTTCGTTTACATTAG 2869
Query 3021 AAGTAGGGTGTAGATAACGCAGGTCAAATGGTAAGGT-TTGTAA 3063
||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct 2870 AAGTAGGATGTAGATAACGCAGGACAAATGGTAAGGAGTTGTAA 2913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117736947295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5