BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45470.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483684 jgi|Araly1|483684|fgenesh2_kg.4__2744__AT2G45470.1 2473 0.0
Ahg486566 jgi|Araly1|486566|fgenesh2_kg.5__2558__AT3G60900.1 1107 0.0
> Ahg483684 jgi|Araly1|483684|fgenesh2_kg.4__2744__AT2G45470.1
Length=1545
Score = 2473 bits (1339), Expect = 0.0
Identities = 1488/1558 (96%), Gaps = 17/1558 (1%)
Strand=Plus/Plus
Query 1 CCACTTCCTCTGCTCCACACTGACACTTGAAAAAACTCAAAACCGTCTCATCATGGCGGC 60
|||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 1 CCACTTCCTCTGCTCCACGCTGACAC-T-CAAAAACTCAAAACCGTCTCATCATGGCGGC 58
Query 61 GTCACAGACATTCTCACTCCTCGCCTTCACTTTCTCCCTCCTCGCCTTTGCTTCCACCGT 120
||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 59 GTCACAGACCTTCTCACTCCTCGCCTTCACTTTTTCCCTCCTCGCCGTCGCTTCCACCGT 118
Query 121 GAGTAGCCACAACATCACTCAAATCCTCGCTGATTCTCCAGATTACTCTTCCTTCAACAG 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 119 GAGTAGCCACAACATCACTCAAATCCTCGCTGATTCTCCTGATTACTCTTCCTTCAACAG 178
Query 181 CTACCTTTCTCAGACGAAGCTCGCCGACGAGATCAACAGCCGCACGACGATTACAGTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 179 CTACCTTTCTCAGACGAAGCTCGCCGACGAGATCAACAGCCGCACGACGATTACAGTCCT 238
Query 241 CGTCCTTAACAATGGCGCAATGTCTGCTCTCGCCGGAAAACATCCACTCTCCGTTATTAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 CGTCCTTAACAATGGCGCAATGTCTGCTCTCGCCGGAAAACATCCACTCTCCGTCATTAA 298
Query 301 AAGCGCTTTAAGCCTCCTCGTCCTCCTCGATTACTACGATCCACAAAAACTCCACAAGAT 360
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 299 AAGCGCTTTAAGCCTCCTCGTACTCCTCGATTACTACGATCCACTAAAACTCCACAAGAT 358
Query 361 CTCCAAAGGCACAACTCTCTCCACCACACTTTACCAAACCACCGGAAACGCTCCCGGAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTCCAAAGGCACAACTCTCTCCACCACACTTTACCAAACCACCGGAAACGCTCCCGGAAA 418
Query 421 CCTAGGATTCGTCAACATCACCGATCTTAAAGGAGGCAAAGTCGGATTTGGCTCCGCCGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCTAGGATTCGTCAACATCACCGATCTTAAAGGAGGCAAAGTCGGATTTGGCTCCGCCGC 478
Query 481 TTCAGGTTCCAAACTCGATTCATCTTACACCAAATCCGTTAAACAAATCCCTTACAACAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTCAGGTTCCAAACTCGATTCATCTTACACCAAATCCGTTAAACAAATCCCTTACAACAT 538
Query 541 CTCAATCCTCGAGATTGATGCTCCGATCATCGCTCCCGGAGTTTTAACCGCTCCTGCTCC 600
||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 539 CTCAATCCTCGAGATCGATGCTCCGATCATCGCTCCGGGAATTTTAACCGCTCCTGCTCC 598
Query 601 TTCCGCCTCCTTGTCAAACATCACCGGATTACTCGAAAAAGCCGGTTGCAAAACCTTTGC 660
||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 599 TTCCGCCGCCTTGTCAAACATCACCGGATTACTAGAGAAAGCCGGTTGCAAAACCTTTGC 658
Query 661 TAATTTGCTTGTCTCAAGTGGAGTACTCAAGACTTACGAATCCGCCGTTGAAAAAGGCTT 720
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 659 GAATTTGCTTGTCTCAAGTGGAGTTCTCAAGACTTACGAATCCGCCGTTGAAAAAGGCTT 718
Query 721 GACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTGAAGGTGTACCAGATCTGACGAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTGAAGGTGTACCAGATCTGACGAA 778
Query 781 GCTCACACAAGCTGAGGTAGTCTCGCTCTTAGAGTATCACGCCCTCGCTGAGTATAAACC 840
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCTCACACAAGCTGAGGTGGTCTCGCTCTTAGAGTATCACGCCCTCGCTGAGTATAAACC 838
Query 841 TAAAGGCTCATTGAAGACTAACAAGAACAATATCTCCACGTTAGCCACTAACGGCGCCGG 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 839 TAAAGGCTCATTGAAGACTAACAAGAACAATATCTCCACGTTAGCCACTAGCGGCGCCGG 898
Query 901 AAAATTCGATCTAACGACCTCTACCTCCGGCGACGAAGTTATTCTCCACACCGGCGTTGC 960
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 GAAATTCGATCTAACTACCTCTACCTCCGGCGATGAAGTTATTCTCCACACCGGCGTTGC 958
Query 961 TCCGTCGAGACTCGCGGACACTGTGCTCGACGCGACTCCGGTTGTGATATTCACTGTGGA 1020
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 959 TCCGTCGAGACTCGCGGACACTGTACTCGACGCGACTCCGGTTGTGATATTCACCGTGGA 1018
Query 1021 TAATGTCCTTCTCCCTGCTGAGCTATTCGGAAAATCTAAATCTCCATCTCCGGCACCGGC 1080
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1019 TAATGTCCTCCTCCCTGCTGAGCTATTCGGAAAATCTAAATCTCCTTCTCCGGCACCGGC 1078
Query 1081 GCCTGAGCCAGTTACCGCACCGACACCATCTCCAGCGGATGCACCTTCACCCACCGCAGC 1140
||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||
Sbjct 1079 GCCGGAGCCAGTTACCGCACCGACACCATCTCCGGCGGATGGACCTTCACCCACCGCGGC 1138
Query 1141 TTCACCACCGGCACCTCCGACGGACGAGTCACCGGAAAGTGCTCCTTCAGACTCGCCAAC 1200
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 1139 TTCACCACCGGCACCTCCGACGGATGATTCACCTGAAAGTGCTCCTTCAGACTCGCCGAC 1198
Query 1201 AGGTTCAGCGAACAGTAAGTCAGCTAACGCAGCGGTTGGCGTGAGCACACCGTCGTTGTT 1260
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 1199 AGGTTCAGCGAACAGTAAGTCGGCTAACGCGGCGGTTGGCGTGAGTACACCGTCGTTGTT 1258
Query 1261 CACCGCATTGGTCACGATCGCCGCCATAGCCGTCTCCGTGTCTCTCTGCTCTTAAAACCT 1320
||||||||||||||| ||||||||| | | |||||||||||||||||||||||| |||||
Sbjct 1259 CACCGCATTGGTCACTATCGCCGCCGTTGTCGTCTCCGTGTCTCTCTGCTCTTAGAACCT 1318
Query 1321 TTCGTAATTACGCAGGCTGCCACTCCCtttgtttatttttaatttaattatcttttcaat 1380
||||||||||||||| |||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1319 TTCGTAATTACGCAGACTGCCACTCCCTTTGTTTATTTTTAATTTATTT-TCTTTT-AAT 1376
Query 1381 ttttatttttGTGGTTATGTGTTGTTGAGTTTGAAAACATGGGATTAGTGAGTGAGGTTT 1440
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TTTTATTTTTGTGGTTATGCGTTGTTGAGTTTGAAAACATGGGATTAGTGAGTGAGGTTT 1436
Query 1441 TATTTAAATCGTTTGTTAATCACATTTTCATTATTGCTTTCAGTGTTGATCTGAT--AGT 1498
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1437 -ATTTAAATCTTTTGTTAATCACATTTTCATTATTGCTTTCAGTGTTGATCTGATTGAG- 1494
Query 1499 ATCTTGTTGAGATCTTTGG-CTTTCACTT-ATTTAACTTCTTTTCCATTTTTGGATAA 1554
||||| | | || || ||| | || |||||||||||||| |||||||||||||
Sbjct 1495 ATCTT-T-G---TCCTTCAACTT--ATTTTATTTAACTTCTTTTACATTTTTGGATAA 1545
> Ahg486566 jgi|Araly1|486566|fgenesh2_kg.5__2558__AT3G60900.1
Length=1841
Score = 1107 bits (599), Expect = 0.0
Identities = 1041/1252 (83%), Gaps = 40/1252 (3%)
Strand=Plus/Plus
Query 53 ATGGCGGCGTCACAGA-CATTCTCACTCCTCGCCTTCACTTTCTCCCTCCTCGCCTTTGC 111
||||||| |||| || | ||||| ||| |||| |||||||| || ||||| ||| | ||
Sbjct 367 ATGGCGGTATCAC-GAGCTTTCTCTCTCTTCGCATTCACTTTATCTCTCCTTGCCGTCGC 425
Query 112 TTCCACCGTGAGTAGCCACAACATCACTCAAATCCTCGCTGATTCTCCAGATTACTCTTC 171
|| ||||| |||| ||||||||||||||||| | ||| | || || || || ||
Sbjct 426 TTATACCGTCTCCGGCCATAACATCACTCAAATCCTATCCGATACGCCGGAATATTCCTC 485
Query 172 CTTCAACAGCTACCTTTCTCAGACGAAGCTCGCCGACGAGATCAACAGCCGCACGACGAT 231
||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||
Sbjct 486 ATTCAACAGCTACCTTTCTCAGACAAAGCTCGCCGACGAAATCAACAGCCGCACTACCAT 545
Query 232 TACAGTTCTCGTCCTTAACAATGGCGCAATGTCTGCTCTCGCCGGAAAACATCCACTCTC 291
|| || || ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 546 CACCGTCCTTGTCCTCAACAATGGCGCAATGTCTGCCCTCGCCGGAAAACATCCACTCTC 605
Query 292 CGTTATTAAAAGCGCTTTAAGCCTCCTCGTCCTCCTCGATTACTACGATCCACAAAAACT 351
||| | |||| ||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct 606 CGTCGTCAAAAATGCTCTCAGCCTCCTCGTCCTCCTCGATTACTACGATCCTTTAAAACT 665
Query 352 CCA-CAAGATCTCCAAAGGCACAACTCTCTCCACCACACTTTACCAAACCACCGGAAACG 410
||| | || |||| |||||| |||||||| ||||||| |||||||||||||||||| |||
Sbjct 666 CCATC-AGCTCTCTAAAGGCTCAACTCTCACCACCACGCTTTACCAAACCACCGGACACG 724
Query 411 CTCCCGGAAACCTAGGATTCGTCAACATCACCGATCTTAAAGGAGGCAAAGTCGGATTTG 470
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 725 CTCCCGGAAACCTAGGATTCGTCAACGTCACCGATCTCAAAGGAGGCAAAGTCGGATTTG 784
Query 471 GCTCCGCCGCTTCAGGTTCCAAACTCGATTCATCTTACACCAAATCCGTTAAACAAATCC 530
||||||||||| | || ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 785 GCTCCGCCGCTCCTGGATCCAAGCTCGATTCTTCTTACACCAAATCCGTTAAACAAATCC 844
Query 531 CTTACAACATCTCAATCCTCGAGATTGATGCTCCGATCATCGCTCCCGGAGTTTTAACCG 590
||||||||||||| | ||||| || | ||||||||||||||||||||| | |||||||
Sbjct 845 CTTACAACATCTCCGTTCTCGAAATCAACGCTCCGATCATCGCTCCCGGAATCTTAACCG 904
Query 591 CTCCTGCTCCTTCCGCCTCCT-TGTCAA-A-CATCACCGGA-TTACTCGAAAAAGCCGGT 646
| ||||||||||| || | ||| || | |||||||||| || ||||| |||||||||
Sbjct 905 CACCTGCTCCTTCTTCCGGCGGTGTTAACAACATCACCGGACTT-CTCGAGAAAGCCGGT 963
Query 647 TGCAAAACCTTTGCTAATTTGCTTGTCTCAAGTGGAGTACTCAAGACTTACGAATCCGCC 706
||||||||||| || |||||||| || || ||||| || || || || ||||||||| ||
Sbjct 964 TGCAAAACCTTCGCGAATTTGCTCGTATCGAGTGGTGTTCTTAAAACCTACGAATCCACC 1023
Query 707 GTTGAAAAAGGCTTGACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTGAAGGTGTA 766
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1024 GTTGAAAAAGGTTTGACGGTTTTTGCACCGTCCGATGAAGCTTTTAAAGCTAAAGGTGTA 1083
Query 767 CCAGATCTGACGAAGCTCACACAAGCTGAGGTAGTCTCGCTCTTAGAGTATCACGCCCTC 826
|||||||||||||| ||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 1084 CCAGATCTGACGAACCTCACGCAAGCTGAGGTGGTCTCGCTCCTAGAGTATCACGCCCTC 1143
Query 827 GCTGAGTATAAACCTAAAGGCTCATTGAAGACTAACAA-GAACAATATCTCCACGTTAGC 885
||||| || ||||| ||||| || ||||||| |||||| || | ||||||||| |||||
Sbjct 1144 GCTGAATACAAACCCAAAGGATCGTTGAAGAATAACAAAGA-CGCTATCTCCACTTTAGC 1202
Query 886 CACTAACGGCGCCGGAAAATTCGATCTAACGACCTCTACCTCCGGCGACGAAGTTATTCT 945
||||||||||||||| |||| |||| ||||||| || || || |||||||| ||||| ||
Sbjct 1203 CACTAACGGCGCCGGTAAATACGATTTAACGACGTCAACTTCTGGCGACGAGGTTATCCT 1262
Query 946 CCACACCGGCGTTGCTCCGTCGAGACTCGCGGACACTGTGCTCGACGCGACTCCGGTTGT 1005
||| ||||| |||| ||||||||||||||| ||||| ||| |||| | ||| || || ||
Sbjct 1263 CCATACCGGTGTTGGTCCGTCGAGACTCGCCGACACGGTGGTCGATGAGACACCTGTCGT 1322
Query 1006 GATATTCACTGTGGATAATGTCCTTCTCCCTGCTGAGCTATTCGGAAAATCTAAATCTCC 1065
||||||||| ||||||||||| || ||||| | ||||| || ||||| ||| ||||||
Sbjct 1323 GATATTCACGGTGGATAATGTACTCCTCCCCACCGAGCTTTTTGGAAAGTCTCCATCTCC 1382
Query 1066 ATCTCCGGCACCGGCGCCTGAGCCAGT---T--ACCG-CACCG---------A---CACC 1107
| ||||||||||| || |||||||| | |||| | ||| | ||||
Sbjct 1383 GGCGCCGGCACCGGCACCGGAGCCAGTGAGTGCACCGACCCCGTCTCCGGCTAATGCACC 1442
Query 1108 ATCTCCAGCGGATGCACCTTCACCCACCGCAGCTTCACCACCGGCACCTCCGACGGACGA 1167
||||||| ||| |||||||| || || |||||||| || || ||||||||| ||| ||
Sbjct 1443 GTCTCCAGTGGAAGCACCTTCTCCAACTGCAGCTTCTCCGCCAGCACCTCCGGTGGATGA 1502
Query 1168 GTCA-C-C-GGAAAGTGCTCCTTCAGACTCGCCAACAGGTTCAGCGAACAGTAA-GTCAG 1223
|| | | |||| | || || ||||||||||| ||| |||||| ||||||||| | | |
Sbjct 1503 ATCTTCGCCGGAAGGAGCCCCGTCAGACTCGCCGACAAGTTCAGAGAACAGTAATG-C-G 1560
Query 1224 CTAA-CGCAGCGGTTGGCGTGA-GCACACC-GTCGTTGTTCACCGCATTGGT 1272
|| ||||||| || ||||| | | | | |||||||||||||||||||
Sbjct 1561 AAAAACGCAGCGTTTCACGTGAAGG-CTTCTG-CGTTGTTCACCGCATTGGT 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5