BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45480.1
Length=1565
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322202 jgi|Araly1|322202|fgenesh1_pm.C_scaffold_4002259 1829 0.0
> Ahg322202 jgi|Araly1|322202|fgenesh1_pm.C_scaffold_4002259
Length=1305
Score = 1829 bits (990), Expect = 0.0
Identities = 1207/1309 (92%), Gaps = 25/1309 (2%)
Strand=Plus/Plus
Query 144 AGATGCAGAGCCCTAAAATggagcaggaggaggttgaggaggagaggatgaggaATAAGT 203
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 5 AGATGCAGAGCCCTAAAATGGAGCAGGAGGAGGTTGAGGTGGAGAGGATGAGGAAGAAGT 64
Query 204 GGCCGTGGATGAAGGCGGCGCAGTTAATGGAGTTTCGGATGCAAGCTTTGGTGTATAGAT 263
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 65 GGCCGTGGATGAAGGCGGCGCAGTTAATGGAGTTTCGGATGCAAACTTTGGTGTACAGAT 124
Query 264 ACATAGAGGCTGGTCTCCGTGTGCCTCATCATCTCGTGGTGCCTATTTGGAACAGTCTTG 323
|||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||
Sbjct 125 ACATAGAGGCTGGTCTTCGTGTGCCTCCTCATCTTGTGGTGCCTATTTGGAACAGTCTTG 184
Query 324 CTCTCTCTTCTTCCTCCAATTACAACTATCACTCTTCTTCTCTGTTGAGTAACAAGGGAG 383
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 185 CTCTCTCTTCCTCCTCAAATTATAACTATCACTCTTCTTCTCTGTTGAGTAACAAGGGAG 244
Query 384 TAACCCATATCGACACGTTGGAAACTGAACCAACTAGGTGCAGGAGAACAGATGGGAAGA 443
||| ||||||||| || |||| ||||||| || |||||||||||||||||||||||||
Sbjct 245 TAAATCATATCGACGCGGCGGAACCTGAACCCACAAGGTGCAGGAGAACAGATGGGAAGA 304
Query 444 AATGGCGCTGTAGCAACACGGTCCTTCTAT-TCGAGAAGTACTGTGAACGGCACATGCAT 502
||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 305 AATGGCGGTGTAGCAACACGGTCCTTCTATAT-GAGAAGTACTGTGAACGGCACATGCAT 363
Query 503 AGAGGTCGTAAACGTTCAAGAAAGCTTGTGGAATCTTCTT-CTGAGGTTGCTTCATCATC 561
||||| |||||||||||||||||||||||||||||||||| | ||||||||||| || ||
Sbjct 364 AGAGGCCGTAAACGTTCAAGAAAGCTTGTGGAATCTTCTTAC-GAGGTTGCTTCGTCGTC 422
Query 562 AACCAAATACGACAACACTTATGGTTTGGATAGGTATAACGAGAGTCAGAGTCATCTTCA 621
||||||| |||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 423 AACCAAACACGACAACACTTATGGTTTGGACAGGAATAACGAGAGTCAGAGTGTTCTTCA 482
Query 622 TGGGACAATCTCGGGTTCTAGTAATGCGCAGGTAGTTACCATTGCTTCACTGCCTAGTGC 681
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 483 TGGGACAATCTCGGGTTCTAGTAATGCGCAGGTAGTTACCATTGCTTCATTGCCTAGTGC 542
Query 682 CAGATCCTGTGAAAATGTCATTCGTCCGTCTTTAGTGATCTCTGAATTCACAAACAAAAG 741
|||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 543 CAGAGCTTGTGATGATGTCATTCGTCCGTCTTTAGTGATCTCTGAATCCACAAACAAAAG 602
Query 742 TGTGAGTCACGG---C---AG-A-AA-GAACATGGAGATGAGTTATGATGACTTTATTAA 792
|||||||||||| | || | || ||| |||||||| |||| |||||||||||| |
Sbjct 603 TGTGAGTCACGGCTACAGGAGCAGAAGGAATATGGAGATAAGTTGTGATGACTTTATCAG 662
Query 793 TGA-AAAAGAGGCGAGTATGTGTGTTGGAGTTGTTCCTCTTCAAGGTGATGAGAGCAAAC 851
| | ||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 663 T-ACAAAAGAGTCGAGTTTGTGTGTAAGAGTTGTTCCTCTTCAAGGTGATGAGAGCTTAC 721
Query 852 CTTCGGTTCAAAAGTTCTTCCCTGAGGTATCTGATAAATGCTTAGAAGCTGCAAAATTCT 911
|||| ||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||
Sbjct 722 CTTCTGTTCAAAAGTTCTTCCCCGAGGTATCTGATAATTCCTTAGAAGCTGCAAAGTTCT 781
Query 912 CAAGCAACAGGAAGAATGATATAATTGCAAGAAGCAGAGAATGGAAGAATATGAA---TG 968
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 782 CAAGTAACCGGAAGAATGATATCATTGCAAGAAGCAGAGAATGGAAGAATATGAATGTTG 841
Query 969 TTAATGGTGGTTTG-TTTCATGGTATCCACTTTTCTCCAGACACTGTTCTTCAAGAACGT 1027
|||||||||| ||| |||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct 842 TTAATGGTGGCTTGTTTTC-TAGTATCCACTTTTCTCCAGATACTGTTCTTCAAGAACGT 900
Query 1028 GGTTGTTTTCGTTTACAAGGAGTTGAAACAGACAATGAACCAGGAAGGTGCCGAAGAACA 1087
||| | |||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 901 GGTGGGTTTCGTTTACAAAGAGTTGATACAGACAATGAACCAGGAAGGTGCCGAAGAACA 960
Query 1088 GATGGGAAGAAGTGGAGATGCAGCAAAGATGTTTTGTCTGGTCAGAAGTACTGCGATAAG 1147
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 961 GATGGGAAGAAGTGGAGATGCAGCAAAGATGCTTTGTCTGGTCAGAAGTACTGCGATAAG 1020
Query 1148 CACATGCATAGAGGTATGAAGAAGAAGCATCCAGTTGATACTACTAACTCACATGAGAAT 1207
||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| |
Sbjct 1021 CACATGCATAGAGGTATCAAGAAGAAGCATCCAGTGGATACTACTAACTTACATGAGCGT 1080
Query 1208 -GCCGGGTTTAGCCCGTTAACCGTGGAAACAGCTGTTAGATCGGTTGTGCCTTGCAAAGA 1266
|| || |||||||||||||| ||| ||||||||| |||||| || || | |||||||||
Sbjct 1081 AGC-GGTTTTAGCCCGTTAACTGTGAAAACAGCTGCTAGATCTGT-GT-C-TTGCAAAGA 1136
Query 1267 TGGAGATGACCAGAAGCATTCTGTTTCAGTCATGGGAATTACACTGCCCCGAGTTTCTGA 1326
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1137 TGGAGATGACCAGAAGCTTTCTGTTTCAGTCATGGGAATTCCACTGCCCCGAGTTTCTGA 1196
Query 1327 TGAGAAGAGCACTAGCAGTTGCAGTACCGACACTACCATTACTGACACAGCTTTAAGGGG 1386
||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TGAGAAGAGCACTTGTAGTTACAGTACCGACACTACCATTACTGACACAGCTTTAAGGGG 1256
Query 1387 TGAAGACGACGATGAGGAGTACTTGTCTTTGTTTTCACCAGGTGTTTAG 1435
|||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1257 TGAAGAAGACGATGAGGAGTACTTGTCTTTGTTTTCATCAGGTGTTTAG 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58620887055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5