BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45490.1
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935507 jgi|Araly1|935507|scaffold_403495.1 1459 0.0
> Ahg935507 jgi|Araly1|935507|scaffold_403495.1
Length=912
Score = 1459 bits (790), Expect = 0.0
Identities = 867/904 (96%), Gaps = 5/904 (1%)
Strand=Plus/Plus
Query 14 AGTACGGTGATCGGAAAAATGAGTAAGAAATCGACAGAATCTGACGCTGGCA-ATACTGA 72
|||||| ||||||||||||||||||||| ||||||||||||||||||||| | |||| ||
Sbjct 7 AGTACGATGATCGGAAAAATGAGTAAGAGATCGACAGAATCTGACGCTGG-AGATACCGA 65
Query 73 GAAGCAATGGTCCCTGGCAGATTTCGAGATCGGGAGACCACTTGGAAAAGGCAAATTTGG 132
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 66 GAAGCAATGGTCCCTGGCAGATTTCGAGATCGGGGGACCACTTGGAAAAGGCAAATTTGG 125
Query 133 CAGAGTCTATCTCGCCCGAGAAGCCAAGAGCAAGTACATAGTGGCGCTGAAAGTCATATT 192
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 126 TAGAGTCTATCTCGCCCGAGAAGCCAAGAGTAAGTACATAGTGGCGCTGAAAGTGATATT 185
Query 193 CAAGGAACAGATAGAGAAGTATAAAATTCATCATCAGCTTAGGAGAGAAATGGAGATCCA 252
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CAAGGAGCAGATTGAGAAGTATAAAATTCATCATCAGCTTAGGAGAGAAATGGAGATCCA 245
Query 253 AACGAGTTTAAGGCACCCAAATATCTTGCGTCTTTTTGGTTGGTTCCATGACAATGAGAG 312
|||||||||||| |||||||||||||||||||| || ||||||||| ||||| ||||| |
Sbjct 246 AACGAGTTTAAGCCACCCAAATATCTTGCGTCTCTTCGGTTGGTTCGATGACGATGAGCG 305
Query 313 GATTTTCTTGATTCTCGAGTATGCTCATGGTGGTGAGCTCTATGGTGTGCTCAAACAGAA 372
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 306 GATTTTCTTGATTCTTGAGTATGCTCATGGTGGTGAGCTCTATGGTGTGCTCAAAAAGAA 365
Query 373 TGGTCATCTTACTGAACAACAAGCCGCCACTTACATTGCAAGTCTCAGTCAGGCACTGGC 432
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TGGTCATCTTACCGAACAACAAGCCGCCACTTACATTGCAAGTCTCAGTCAGGCACTGGC 425
Query 433 CTATTGTCATGGCAAATGTGTGATTCATAGAGACATCAAACCTGAAAATTTGTTGCTCGA 492
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 426 CTATTGTCATGGAAAATGTGTGATTCACAGAGACATCAAACCTGAAAATTTGTTGCTCGA 485
Query 493 TCATGAGGGGAGATTGAAAATTGCTGACTTTGGATGGTCAGTTCAGTCAAGTAACAAGAG 552
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 486 TCATGAGGGGAGATTGAAAATTGCTGACTTTGGATGGTCAGTGCAATCAAGTAACAAGAG 545
Query 553 GAAAACAATGTGTGGAACCTTGGATTACTTAGCACCTGAGATGGTAGAAAATAGAGATCA 612
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 546 GAAAACAATGTGTGGAACCTTAGATTACTTGGCACCTGAGATGGTAGAAAATAGAGATCA 605
Query 613 TGATTATGCAGTTGATAACTGGACCTTAGGCATACTGTGTTACGAGTTTCTCTACGGTAA 672
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 606 CGATTATGCAGTTGATAACTGGACTTTAGGCATACTGTGTTACGAGTTTCTCTACGGTAA 665
Query 673 CCCTCCATTCGAAGCCGAGAGTCAAAAAGATACATTCAAGAGAATTCTTAAGATTGATCT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CCCTCCATTCGAAGCCGAGAGTCAAAAAGATACATTCAAGAGAATTCTTAAGATTGATCT 725
Query 733 GAGTTTTCCTCTTACACCGAATGTTTCAGAAGAAGCCAAAAATCTTATCAGTCAGCTTCT 792
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TAGTTTTCCTCTTACACCGAATGTTTCAGAAGAAGCCAAAAATCTTATCAGTCAGCTTCT 785
Query 793 TGTTAAGGATCCCTCCAAACGACTCTCTATTGAGAAGATCATGCAACATCCATGGATTGT 852
||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 786 TGTTAAGGATCCCTCAAAACGACTCTCCCTTGAGAAGATCATGCAACATCCGTGGATTGT 845
Query 853 CAAGAACGCAGATCCGAAAGGTGTGTGTGCCTCAATTGATATTTGATG-TATTCTCTCCC 911
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||
Sbjct 846 CAAGAACGCAGATCCGAAAGGTGTGTGTGCCTCAATTGATGTTTGATGCTATTCTC-CC- 903
Query 912 AATC 915
||||
Sbjct 904 AATC 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34005641964
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5