BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45490.1 Length=917 Score E Sequences producing significant alignments: (Bits) Value Ahg935507 jgi|Araly1|935507|scaffold_403495.1 1459 0.0 > Ahg935507 jgi|Araly1|935507|scaffold_403495.1 Length=912 Score = 1459 bits (790), Expect = 0.0 Identities = 867/904 (96%), Gaps = 5/904 (1%) Strand=Plus/Plus Query 14 AGTACGGTGATCGGAAAAATGAGTAAGAAATCGACAGAATCTGACGCTGGCA-ATACTGA 72 |||||| ||||||||||||||||||||| ||||||||||||||||||||| | |||| || Sbjct 7 AGTACGATGATCGGAAAAATGAGTAAGAGATCGACAGAATCTGACGCTGG-AGATACCGA 65 Query 73 GAAGCAATGGTCCCTGGCAGATTTCGAGATCGGGAGACCACTTGGAAAAGGCAAATTTGG 132 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 66 GAAGCAATGGTCCCTGGCAGATTTCGAGATCGGGGGACCACTTGGAAAAGGCAAATTTGG 125 Query 133 CAGAGTCTATCTCGCCCGAGAAGCCAAGAGCAAGTACATAGTGGCGCTGAAAGTCATATT 192 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 126 TAGAGTCTATCTCGCCCGAGAAGCCAAGAGTAAGTACATAGTGGCGCTGAAAGTGATATT 185 Query 193 CAAGGAACAGATAGAGAAGTATAAAATTCATCATCAGCTTAGGAGAGAAATGGAGATCCA 252 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 CAAGGAGCAGATTGAGAAGTATAAAATTCATCATCAGCTTAGGAGAGAAATGGAGATCCA 245 Query 253 AACGAGTTTAAGGCACCCAAATATCTTGCGTCTTTTTGGTTGGTTCCATGACAATGAGAG 312 |||||||||||| |||||||||||||||||||| || ||||||||| ||||| ||||| | Sbjct 246 AACGAGTTTAAGCCACCCAAATATCTTGCGTCTCTTCGGTTGGTTCGATGACGATGAGCG 305 Query 313 GATTTTCTTGATTCTCGAGTATGCTCATGGTGGTGAGCTCTATGGTGTGCTCAAACAGAA 372 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 306 GATTTTCTTGATTCTTGAGTATGCTCATGGTGGTGAGCTCTATGGTGTGCTCAAAAAGAA 365 Query 373 TGGTCATCTTACTGAACAACAAGCCGCCACTTACATTGCAAGTCTCAGTCAGGCACTGGC 432 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 366 TGGTCATCTTACCGAACAACAAGCCGCCACTTACATTGCAAGTCTCAGTCAGGCACTGGC 425 Query 433 CTATTGTCATGGCAAATGTGTGATTCATAGAGACATCAAACCTGAAAATTTGTTGCTCGA 492 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 426 CTATTGTCATGGAAAATGTGTGATTCACAGAGACATCAAACCTGAAAATTTGTTGCTCGA 485 Query 493 TCATGAGGGGAGATTGAAAATTGCTGACTTTGGATGGTCAGTTCAGTCAAGTAACAAGAG 552 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 486 TCATGAGGGGAGATTGAAAATTGCTGACTTTGGATGGTCAGTGCAATCAAGTAACAAGAG 545 Query 553 GAAAACAATGTGTGGAACCTTGGATTACTTAGCACCTGAGATGGTAGAAAATAGAGATCA 612 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 546 GAAAACAATGTGTGGAACCTTAGATTACTTGGCACCTGAGATGGTAGAAAATAGAGATCA 605 Query 613 TGATTATGCAGTTGATAACTGGACCTTAGGCATACTGTGTTACGAGTTTCTCTACGGTAA 672 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 606 CGATTATGCAGTTGATAACTGGACTTTAGGCATACTGTGTTACGAGTTTCTCTACGGTAA 665 Query 673 CCCTCCATTCGAAGCCGAGAGTCAAAAAGATACATTCAAGAGAATTCTTAAGATTGATCT 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 666 CCCTCCATTCGAAGCCGAGAGTCAAAAAGATACATTCAAGAGAATTCTTAAGATTGATCT 725 Query 733 GAGTTTTCCTCTTACACCGAATGTTTCAGAAGAAGCCAAAAATCTTATCAGTCAGCTTCT 792 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 726 TAGTTTTCCTCTTACACCGAATGTTTCAGAAGAAGCCAAAAATCTTATCAGTCAGCTTCT 785 Query 793 TGTTAAGGATCCCTCCAAACGACTCTCTATTGAGAAGATCATGCAACATCCATGGATTGT 852 ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| Sbjct 786 TGTTAAGGATCCCTCAAAACGACTCTCCCTTGAGAAGATCATGCAACATCCGTGGATTGT 845 Query 853 CAAGAACGCAGATCCGAAAGGTGTGTGTGCCTCAATTGATATTTGATG-TATTCTCTCCC 911 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || Sbjct 846 CAAGAACGCAGATCCGAAAGGTGTGTGTGCCTCAATTGATGTTTGATGCTATTCTC-CC- 903 Query 912 AATC 915 |||| Sbjct 904 AATC 907 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34005641964 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5