BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45500.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902586 jgi|Araly1|902586|Al_scaffold_0004_3236 2377 0.0
> Ahg902586 jgi|Araly1|902586|Al_scaffold_0004_3236
Length=1476
Score = 2377 bits (1287), Expect = 0.0
Identities = 1415/1478 (96%), Gaps = 4/1478 (0%)
Strand=Plus/Plus
Query 123 ATGAGTTTCCTCAGAGGTATAATTGATTCGTTTAGCTCTATTCTCAACGAAGAATCTAAG 182
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGTTTTCTCAGAGGTATAATTGATTCGTTTAGCTCGATTCTCAACGAAGAATCTAAG 60
Query 183 AAAGATCCTAGTGTTTCATCATCATCAACTTCTTCTGAG-TCCATGAATGGTATCGATGG 241
||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 61 CAAGATTCTAGTGTATCATCATCATCAACTTCTTCTG-GTTCCATGAATGGTATCGATGG 119
Query 242 AGTTCCGGTTACTAACGAACGAATTGCGTATAAGCTTAAAGGATACTTCGATTTAGCGAA 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGTTCCGGTTACTAACGAACGAATTGCGTATAAGCTTAAAGGATACTTCGATTTAGCGAA 179
Query 302 AGAGGAAATCGCTAAAGGGGTTAGAGCAGAAGAGTGGGGTTTACATGATGATGCTCTTCT 361
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAGGAAATCGCTAAAGGCGTTAGAGCAGAAGAGTGGGGTTTACATGATGATGCTCTTCT 239
Query 362 TCATTATAGAAATGCTCAAAGGATCATGAATGAAGCTACTTCTACTCCTTCTCCTTCGTA 421
||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| ||
Sbjct 240 TCATTATAGGAATGCTCAGAGGATCATGAATGAAGCTAGTTCTACTCCTTCTCCTTCTTA 299
Query 422 TATTAGTTCCAGTGAAAAGGAGAAGGTGAGATCGTACCGAGAGAAGATTTCAAATTGGCA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TATTAGTTCCAGTGAAAAGGAGAAGGTGAGATCGTACCGAGAGAAGATTTCAAATTGGCA 359
Query 482 AAATCAAGTATCTGAGAGATTGCAAGCTTTGGGTAAGCGTACAGGTGTTGGAATGTCTGA 541
||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 360 AAATCAAGTATCTGAAAGATTGCAAGCTTTGGGTAAGCGTACAGGTGTTAGAGTGTCTGA 419
Query 542 GAATAAGAGGACGGTGGCATATCCTTCTTCAGCTTCAGTTTCCTCTACAGCGTCAAGGTA 601
||||||||| || || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAATAAGAGAACCGTAGCATCTCCTTCTTCAGCTTCAGTTTCCTCTACAGCGTCAAGGTA 479
Query 602 TAGGAAAACTTTATCGCAAAAGACTCCGGTTGCCAGAGGTGGCGTTGCAACGCCAAGGAA 661
||| ||||||| || |||||||||||| ||| ||||||||||| |||||||| ||| |||
Sbjct 480 TAGAAAAACTTCATTGCAAAAGACTCCAGTTCCCAGAGGTGGCATTGCAACGGCAAAGAA 539
Query 662 CCCTAAAGATGCTGCTGCAAGCCCAAAACCTGTGAAAGAATCTGGAAATGTCTATGATGA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCCTAAAGATGCTGCTGCAAGCCCAAAACCTGTGAAAGAATCTGGAAATGTCTATGATGA 599
Query 722 TAAGTTGGTTGAGATGATAAATACAACAATAGTGGATAGAAGCCCATCTGTGAAATGGGA 781
||||||||||||||||||||| |||||||||||||||| |||||| |||||||| |||||
Sbjct 600 TAAGTTGGTTGAGATGATAAACACAACAATAGTGGATAAAAGCCCGTCTGTGAAGTGGGA 659
Query 782 TGATGTCGCTGGACTTAATGGAGCTAAACAAGCTTTGTTGGAGATGGTAATTTTACCGGC 841
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGATGTCGCTGGACTTGATGGAGCTAAACAAGCTTTGTTGGAGATGGTAATTTTACCGGC 719
Query 842 AAAACGAAGAGATTTGTTCACTGGTCTCCGAAGACCAGCGAGAGGTCTGCTTCTCTTTGG 901
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 AAAACGAAGGGATTTATTCACTGGTCTCCGGAGACCAGCGAGAGGTCTGCTTCTCTTTGG 779
Query 902 GCCACCTGGCAATGGGAAAACAATGCTTGCCAAGGCAGTCGCTTCTGAGTCACAGGCAAC 961
|||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 ACCACCTGGAAATGGAAAAACAATGCTTGCCAAGGCAGTCGCTTCCGAGTCACAGGCAAC 839
Query 962 ATTTTTCAATGTCTCAGCATCTTCTTTGACATCAAAATGGGTGGGTGAGGCTGAAAAGCT 1021
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 ATTCTTCAACGTCTCAGCATCTTCTTTGACGTCAAAATGGGTGGGTGAGGCTGAAAAGCT 899
Query 1022 AGTTAAAACGCTGTTTCAAGTTGCAATATCCAGACAACCGTCTGTTATATTTATGGATGA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGTTAAAACGCTGTTTCAAGTTGCAATATCCAGACAACCGTCTGTTATATTTATGGATGA 959
Query 1082 AATAGATAGTATAATGTCAACAAGGTCAACCAGTGAGAATGAAGCAAGCAGAAGGCTGAA 1141
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 960 AATAGATAGTATAATGTCAACAAGGTCGATCAGTGAGAATGAAGCAAGCAGAAGGTTGAA 1019
Query 1142 ATCAGAATTTCTTATCCAGTTTGATGGTGTGACTTCTAATCCTGATGATTTGGTGATTAT 1201
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1020 ATCAGAATTCCTTATCCAGTTTGACGGTGTGACTTCTAATCCTGATGATTTGGTGATTGT 1079
Query 1202 CATTGGAGCTACTAACAAGCCACAGGAGTTGGATGATGCAGTGCTTAGGAGATTGGTGAA 1261
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 CATTGGAGCTACTAACAAGCCACAGGAGTTGGATGATGCAGTGCTCAGGAGATTGGTGAA 1139
Query 1262 GAGAATATATGTACCATTGCCGGATTCCAACGTCAGAAAACTACTTTTTAAAACTAAATT 1321
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 GAGAATATATGTACCATTGCCGGATTCAAACGTCAGAAAACTACTTTTTAAAACTAAATT 1199
Query 1322 AAAGTGCCAGCCTCACTCGTTATCCGATGGCGACATTGATAAAATCGTCAAAGAAACCGA 1381
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1200 AAAGTGCCAGCCTCACTCTTTATCCGATGACGACATTGATAAAATCGTCAAAGAAACCGA 1259
Query 1382 AGGATACTCAGGAAGCGATCTCCAAGCATTGTGTGAAGAAGCTGCAATGATGCCAATCAG 1441
||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1260 AGGATACTCAGGAAGTGATCTTCAAGCATTGTGTGAAGAAGCTGCAATGATGCCGATCAG 1319
Query 1442 AGAACTCGGTGCAAATATTCTAAC-GATCCAAGCAAATAAAGTAAGATCTCTACGATATG 1500
|||||| |||||| ||||||| || | |||||||||||||||||||| ||||||||||||
Sbjct 1320 AGAACTGGGTGCAGATATTCTTACCG-TCCAAGCAAATAAAGTAAGACCTCTACGATATG 1378
Query 1501 ATGATTTTCGGAAATCAATGGCAGTGATCAGACCAAGCTTGAGTAAAAGCAAATGGGAAG 1560
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1379 ATGATTTTCGGAAATCGATGGCAGTGATCAGACCCAGCTTGAGTAAAAGCAAATGGGAAG 1438
Query 1561 AGCTTGAACGTTGGAACTCAGAGTTTGGCTCTAATTGA 1598
||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AGCTTGAACGTTGGAACTCAGAGTTTGGCTCTAATTGA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5