BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45510.1 Length=1775 Score E Sequences producing significant alignments: (Bits) Value Ahg346360 jgi|Araly1|346360|fgenesh1_pg.C_scaffold_4002702 2427 0.0 Ahg483688 jgi|Araly1|483688|fgenesh2_kg.4__2748__AT2G44890.1 1230 0.0 > Ahg346360 jgi|Araly1|346360|fgenesh1_pg.C_scaffold_4002702 Length=1536 Score = 2427 bits (1314), Expect = 0.0 Identities = 1465/1539 (95%), Gaps = 6/1539 (0%) Strand=Plus/Plus Query 12 ATGGAGATTTTGACGAGCATAGCTATTACAGTAGCAACAACGATCTTCATCGTTTTGTGT 71 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 1 ATGGAGATTTTGACGAGCATAGCTATTACAATAGCAACAACGATCTTCATCGTTTTGTCT 60 Query 72 TTCACTATCTATCTTATGATCAGAATCTTTACCGGGAAATCAAGAAACGACAAGAGATAT 131 ||||| |||||||| | |||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 TTCACCATCTATCTCACGATCAGAATCTTTACCGGAAAATCAAGAAACGACAAGAGATAT 120 Query 132 GCTCCAGTGCATGCCACGGTCTTTGATCTTCTCTTCCACAGCGACGAGTTATACGATTAC 191 |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 121 GCTCCAGTACATGCCACGGTCTTTGATCTTCTCTTCCACAGGGACGAATTATACGATTAC 180 Query 192 GAGACAGAGATCGCGAG-AGAGAAGCCGACTTACAGGTTTTTGAGTCCAGGACAGAGCGA 250 ||||||||||||||||| | | ||||||||||| ||||| || ||||||||||||||||| Sbjct 181 GAGACAGAGATCGCGAGAACA-AAGCCGACTTATAGGTTCTTAAGTCCAGGACAGAGCGA 239 Query 251 GATATTAACTGCAGATCCTCGTAACGTGGAGCATATTCTCAAGACAAGATTCGATAACTA 310 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 240 GATATTAACTGCTGATCCTCGGAACGTGGAGCATATTCTCAAGACAAGATTCGATAACTA 299 Query 311 TAGTAAAGGACACAG-TAGTAGAGAGAATATGGCGGATCTTCTAGGACATGGGATCTTTG 369 ||||||||||| | | | ||||||||||| ||||||||||| |||||||||||||||||| Sbjct 300 TAGTAAAGGAC-CTGCTGGTAGAGAGAATCTGGCGGATCTTTTAGGACATGGGATCTTTG 358 Query 370 CTGTTGATGGAGAGAAATGGAGACAACAGAGGAAGCTTTCGAGCTTTGAGTTCTCTACTA 429 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 359 CTGTTGATGGAGAGAAATGGAGACAACAAAGGAAGCTTGCGAGCTTTGAGTTCTCTACTA 418 Query 430 GAGTTTTAAGAGATTTTAGCTGCTCTGTTTTTAGGAGAAATGCATCTAAGCTTGTTGGTT 489 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 419 GAGTTTTAAGAGATTTTAGCTGCTCTGTTTTTAGGAGAAATGCATCTAAGCTTATTGGTT 478 Query 490 TTGTCTCGGAGTTTGCTCTCTCTGGAAAAGCTTTTGATGCTCAAGATTTGTTGATGAGAT 549 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 479 TTGTCTCGGAGTTTGCTCTCTCTGGAAAAGCTTTTGATGCTCAAGATATGTTGATGAGAT 538 Query 550 GTACACTGGACTCCATCTTTAAAGTTGGGTTTGGTGTGGAGTTAAAATGTTTGGATGGGT 609 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 GTACATTGGACTCCATCTTTAAAGTTGGGTTTGGTGTGGAGTTAAAATGTTTGGATGGGT 598 Query 610 TTAGCAAAGAAGGGCAAGAGTTTATGGAAGCTTTTGATGAAGGTAACGTTGCAACTAGTT 669 |||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 599 TTAGCAAAAAAGGGGAAGAGTTTATGGAGGCTTTTGATGAAGGTAACGTTGCAACTAGTT 658 Query 670 CCAGATTCATCGATCCTCTTTGGAAGCTGAAATGGTTTTTCAACATTGGATCACAATCTA 729 |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 659 CCAGATACATCGATCCACTTTGGAAGCTGAAATGGTTTCTCAACATTGGATCACAATCTA 718 Query 730 AGCTCAAGAAGAGCATTGCTACTATAGATAAATTTGTCTATAGTCTCATTACCACTAAAA 789 | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 719 AACTCAAGAAGAGTATTGCTACTATAGATAAATTTGTCTATAGTCTCATTACCACAAAAA 778 Query 790 GGAAAGAGCTTGCTAAGGAACAGAACACTGTTGTTAGAGAGGACATACTATCGAGATTCC 849 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 779 GGAAAGAGCTTGCTAAGGAACAGAACACTGTTGTTAGAGAGGACATACTATCGAGATTTC 838 Query 850 TAGTGGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGGGATATAATTC 909 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 839 TAGTGGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGAGATATAATTC 898 Query 910 TGAACTTCATGATTGCTGGTAAGGACACAACCGCTGCACT-ACTCTCTTGGTTCTTGTAC 968 ||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||||| Sbjct 899 TGAACTTTATGATTGCTGGTAAGGACACAACCGCTGCA-TCACTTTCTTGGTTCTTGTAC 957 Query 969 ATGCTCTGCAAAAACCCACTTGTTCAGGAGAAAATCGTACAAGAAATCAGAGATGTGACA 1028 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 958 ATGCTCTGCAAAAACCCACTTGTTCAGGAGAAAATCGTTCAAGAAATCAGAGATGTGACA 1017 Query 1029 TTTAGTCACGAGAAAACGACCGATGTAAATGGTTTCGTTGAAAGTATTAACGAAGAGGCT 1088 | |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| Sbjct 1018 TCAAGTCACGAGAAAACAACCGACGTAAATGGTTTCATTGAAAGTATTAACGAAGAGGCT 1077 Query 1089 CTTGATGAGATGCACTACCTCCATGCAGCCTTGTCTGAGACCTTGAGGCTCTACCCTCCT 1148 |||||| ||||||| || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1078 CTTGATCAGATGCAGTATCTCCATGCAGCCTTGTCTGAGACCTTGAGGCTTTACCCTCCT 1137 Query 1149 GTGCCTGTGGACATGAGGTGTGCAGAAAATGATGACGTTCTTCCAGATGGACATAGAGTG 1208 ||||||||||||| ||| | |||||||||||||||| ||||||||||||||||||||||| Sbjct 1138 GTGCCTGTGGACACGAGATATGCAGAAAATGATGACATTCTTCCAGATGGACATAGAGTG 1197 Query 1209 AGCAAAGGGGATAATATCTACTACATAGCCTATGCAATGGGTAGGATGACTTACATTTGG 1268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 AGCAAAGGGGATAATATCTACTACATAGCCTATGCAATGGGTAGGATGACTTACATTTGG 1257 Query 1269 GGTCAAGATGCTGAAGAATTCAAGCCAGAGAGATGGCTCAAGGACGGCTTATTCCAACCC 1328 || ||||||||||| ||||||||||||||||||||||| ||||||||| | ||||||||| Sbjct 1258 GGACAAGATGCTGAGGAATTCAAGCCAGAGAGATGGCTTAAGGACGGCGTGTTCCAACCC 1317 Query 1329 GAATCACCATTCAAATTCATAAGCTTTCATGCTGGTCCAAGAATCTGTCTTGGCAAGGAT 1388 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 GAATCACCATTCAAATTTATAAGCTTTCATGCTGGTCCAAGAATCTGTCTTGGCAAGGAT 1377 Query 1389 TTCGCATACCGGCAGATGAAGATAGTATCAATGGCACTTCTTCACTTCTTTCGCTTCAAA 1448 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1378 TTCGCATACCGGCAAATGAAGATAGTAGCAATGGCACTTCTTCACTTCTTTCGCTTCAAA 1437 Query 1449 ATGGCTGATGAGAACAGCAAGGTGTATTACAAGAGAATGCTTACTCTTCATGTCGATGGA 1508 |||||||||||||| ||||| |||| |||||||| ||||||||| ||||||||||| ||| Sbjct 1438 ATGGCTGATGAGAAGAGCAATGTGTGTTACAAGACAATGCTTACACTTCATGTCGAAGGA 1497 Query 1509 GGACTCCATCTCTGTGCAATCCCGAGGACAAGCACTTGA 1547 ||||||||||| || ||||| |||||||||||||||||| Sbjct 1498 GGACTCCATCTATGCGCAATTCCGAGGACAAGCACTTGA 1536 > Ahg483688 jgi|Araly1|483688|fgenesh2_kg.4__2748__AT2G44890.1 Length=1485 Score = 1230 bits (666), Expect = 0.0 Identities = 884/988 (89%), Gaps = 20/988 (2%) Strand=Plus/Plus Query 12 ATGGAGATTTTGACGAGCATAGCTATTACAGTAGCAACAACGATCTTCATCGTTTTGT-G 70 |||||||||||||||||||| || |||| ||| | ||||||||||||||||||| ||| Sbjct 1 ATGGAGATTTTGACGAGCATGGCAATTATAGTTGTAACAACGATCTTCATCGTTCTGTCT 60 Query 71 TTT-CACTATCTATCTTATGATCAGAATCTTTACCGGGAAATCAAGAAACGACAAGAGAT 129 ||| ||| ||||||| | |||||||||||| ||||||||||| |||||||||||||| | Sbjct 61 TTTGCAC--TCTATCTCACGATCAGAATCTTCACCGGGAAATCCAGAAACGACAAGAGGT 118 Query 130 ATGCTCCAGTGCATGCCACGGTCTTTGATCTTCTCTTCCACAGCGACGAGTTATACGATT 189 || ||||||| || ||||| |||| |||||| ||||||| |||||| | |||||||||| Sbjct 119 ATACTCCAGTACACGCCACAATCTTCGATCTTTTCTTCCATAGCGACAAATTATACGATT 178 Query 190 ACGAGACAGAGATCGCGA-GAGAGAAGCCGACTTACAGGTTTTTGAGTCCAGGACAGAGC 248 |||||||||||||||||| || | ||||| |||| |||||| |||||||||||||||||| Sbjct 179 ACGAGACAGAGATCGCGAGGACA-AAGCCTACTTTCAGGTTCTTGAGTCCAGGACAGAGC 237 Query 249 GAGATATTAACTGCAGATCCTCGTAACGTGGAGCATATTCTCAAGACAAGATTCGATAAC 308 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 238 GAGATATTGACTGCAGATCCTCGGAACGTGGAGCATATTCTCAAGACAAGATTCGATAAC 297 Query 309 TATAGTAAAGGACACAGTAG-TAGAGAGAATATGGCGGATCTTCTAGGACATGGGATCTT 367 ||||||||||||| | || | |||||||||| | ||||||||| | |||||||| ||||| Sbjct 298 TATAGTAAAGGACCC-GTTGGTAGAGAGAATCTTGCGGATCTTTTGGGACATGGAATCTT 356 Query 368 TGCTGTTGATGGAGAGAAATGGAGACAACAGAGGAAGCTT-TCGAGCTTTGAGTTCTCTA 426 ||||| ||||||||||||||||| |||||| ||||||||| | ||||||||||||||||| Sbjct 357 TGCTGCTGATGGAGAGAAATGGAAACAACAAAGGAAGCTTGT-GAGCTTTGAGTTCTCTA 415 Query 427 CTAGAGTTTTAAGAGATTTTAGCTGCTCTGTTTTTAGGAGAAATGCATCTAAGCTTGTTG 486 |||||||||||||| |||||||||||||||||||| ||| || ||| || ||||||||| Sbjct 416 CTAGAGTTTTAAGAAATTTTAGCTGCTCTGTTTTTCGGACAAGTGCTTCAAAGCTTGTTA 475 Query 487 GTTTTGTCTCGGAGTTTGCTCTCTCTGGAAAAGCTTTTGATGCTCAAGATTTGTTGATGA 546 ||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||||| Sbjct 476 GTTTTGTTTCGGAGTTTGCTCTCTCTGGAAAACCTTTTGATGCTCAGGATATGTTGATGA 535 Query 547 GATGTACACTGGACTCCATCTTTAAAGTTGGGTTTGGTGTGGAGTTAAAATGTTTGGATG 606 |||||||| | ||||| |||||||||||||||||||||||||| ||| |||| | |||| Sbjct 536 GATGTACAATAGACTCGATCTTTAAAGTTGGGTTTGGTGTGGAACTAAGATGTCTAGATG 595 Query 607 GGTTTAGCAAAGAAGGGCAAGAGTTTATGGAAG-CTTTTGATGAAGGTAACGTTGCAACT 665 ||||||||||||||||| ||||||| ||| ||| ||||||||||||| |||||||||||| Sbjct 596 GGTTTAGCAAAGAAGGGGAAGAGTTCATG-AAGGCTTTTGATGAAGGCAACGTTGCAACT 654 Query 666 AGTTCCAGATTCATCGATCCTCTTTGGAAGCTGAAATGGTTT-TTCAACATTGGATCACA 724 |||||||| |||| |||||| ||||||||||||||||| ||| || |||||||||||| | Sbjct 655 AGTTCCAGGTTCACCGATCCGCTTTGGAAGCTGAAATGTTTTCTT-AACATTGGATCAGA 713 Query 725 ATCTA-AGCTCAAGAAGAGCATTGCTACTATAGATAAATTTGTCTATAGTCTCATTACCA 783 |||| | ||| |||||||| ||||||||||||| || |||||||||||||||||||||| Sbjct 714 GTCTAGA-CTCCAGAAGAGCGTTGCTACTATAGACAAGTTTGTCTATAGTCTCATTACCA 772 Query 784 CTAAAAGGAAAGAGCTTGCTAAGGAACA-GAACACTGTTGTTAGAGAGGACATACTATCG 842 ||||||||||||||||||| |||||||| || ||||| ||||||||||||||| |||||| Sbjct 773 CTAAAAGGAAAGAGCTTGCCAAGGAACATGA-CACTGCTGTTAGAGAGGACATCCTATCG 831 Query 843 AGATTCCTAGTGGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGGGAT 902 | ||| || | |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 832 AAATTTCTTCTCGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGAGAT 891 Query 903 ATAATTCTGAACTTCATGATTGCTGGTAAGGACACAACCGCTGCA-CTACTCTCTTGGTT 961 || ||| |||| |||||| |||||||||||||||||||||||||| || || |||||||| Sbjct 892 ATCATTTTGAATTTCATGGTTGCTGGTAAGGACACAACCGCTGCATCT-CTTTCTTGGTT 950 Query 962 CTTGTACATGCTCTGCAAAAACCCACTT 989 |||||||||||||||||||||||||||| Sbjct 951 CTTGTACATGCTCTGCAAAAACCCACTT 978 Score = 756 bits (409), Expect = 0.0 Identities = 475/507 (94%), Gaps = 4/507 (1%) Strand=Plus/Plus Query 1043 AACGACCGATGTAAATGGTTTCGTTGAAAGTATTAA-CGAAGAGGCTCTTGATGAGATGC 1101 ||| || ||||||||||||||| ||| |||| ||| ||||||| |||||| | |||||| Sbjct 981 AACAACTGATGTAAATGGTTTCATTGGAAGT-GTAACCGAAGAGACTCTTGCTCAGATGC 1039 Query 1102 ACTACCTCCATGCAGCCTTGTCTGAGACCT-TGAGGCTCTACCCTCCTGTGCCTGTGGAC 1160 | || |||||||| ||||||||||||| || ||||||| |||||||||||||||| |||| Sbjct 1040 AGTATCTCCATGCGGCCTTGTCTGAGA-CTCTGAGGCTTTACCCTCCTGTGCCTGAGGAC 1098 Query 1161 ATGAGGTGTGCAGAAAATGATGACGTTCTTCCAGATGGACATAGAGTGAGCAAAGGGGAT 1220 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1099 ATGAGGTGTGCAGGAAATGATGACGTTCTTCCAGATGGACATAGAGTGAGCAAAGGGGAT 1158 Query 1221 AATATCTACTACATAGCCTATGCAATGGGTAGGATGACTTACATTTGGGGTCAAGATGCT 1280 ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1159 AATGTCTACTACATAGCCTATGCAATGGGTAGGATGACTTACATTTGGGGTCCAGATGCT 1218 Query 1281 GAAGAATTCAAGCCAGAGAGATGGCTCAAGGACGGCTTATTCCAACCCGAATCACCATTC 1340 || ||||||||||||||||||||||||||||||||| | |||||| |||||| ||||||| Sbjct 1219 GAGGAATTCAAGCCAGAGAGATGGCTCAAGGACGGCGTGTTCCAAACCGAATTACCATTC 1278 Query 1341 AAATTCATAAGCTTTCATGCTGGTCCAAGAATCTGTCTTGGCAAGGATTTCGCATACCGG 1400 ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1279 AAATTCATAAGCTTTCATGCTGGTCCAAGAATCTGTCCAGGCAAGGATTTTGCATACCGG 1338 Query 1401 CAGATGAAGATAGTATCAATGGCACTTCTTCACTTCTTTCGCTTCAAAATGGCTGATGAG 1460 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1339 CAAATGAAGATAGTATCAATGGCACTTCTTCACTTCTTTCGCTTCAAAATGGCTGATGAG 1398 Query 1461 AACAGCAAGGTGTATTACAAGAGAATGCTTACTCTTCATGTCGATGGAGGACTCCATCTC 1520 ||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1399 AACAGCAAGGTGTGTTACAAGAGGATGCTTACACTTCATGTCGATGGAGGACTCCATCTC 1458 Query 1521 TGTGCAATCCCGAGGACAAGCACTTGA 1547 ||||||||||||||||||||||||||| Sbjct 1459 TGTGCAATCCCGAGGACAAGCACTTGA 1485 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66619838505 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5