BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45510.1
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346360 jgi|Araly1|346360|fgenesh1_pg.C_scaffold_4002702 2427 0.0
Ahg483688 jgi|Araly1|483688|fgenesh2_kg.4__2748__AT2G44890.1 1230 0.0
> Ahg346360 jgi|Araly1|346360|fgenesh1_pg.C_scaffold_4002702
Length=1536
Score = 2427 bits (1314), Expect = 0.0
Identities = 1465/1539 (95%), Gaps = 6/1539 (0%)
Strand=Plus/Plus
Query 12 ATGGAGATTTTGACGAGCATAGCTATTACAGTAGCAACAACGATCTTCATCGTTTTGTGT 71
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1 ATGGAGATTTTGACGAGCATAGCTATTACAATAGCAACAACGATCTTCATCGTTTTGTCT 60
Query 72 TTCACTATCTATCTTATGATCAGAATCTTTACCGGGAAATCAAGAAACGACAAGAGATAT 131
||||| |||||||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TTCACCATCTATCTCACGATCAGAATCTTTACCGGAAAATCAAGAAACGACAAGAGATAT 120
Query 132 GCTCCAGTGCATGCCACGGTCTTTGATCTTCTCTTCCACAGCGACGAGTTATACGATTAC 191
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 121 GCTCCAGTACATGCCACGGTCTTTGATCTTCTCTTCCACAGGGACGAATTATACGATTAC 180
Query 192 GAGACAGAGATCGCGAG-AGAGAAGCCGACTTACAGGTTTTTGAGTCCAGGACAGAGCGA 250
||||||||||||||||| | | ||||||||||| ||||| || |||||||||||||||||
Sbjct 181 GAGACAGAGATCGCGAGAACA-AAGCCGACTTATAGGTTCTTAAGTCCAGGACAGAGCGA 239
Query 251 GATATTAACTGCAGATCCTCGTAACGTGGAGCATATTCTCAAGACAAGATTCGATAACTA 310
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 GATATTAACTGCTGATCCTCGGAACGTGGAGCATATTCTCAAGACAAGATTCGATAACTA 299
Query 311 TAGTAAAGGACACAG-TAGTAGAGAGAATATGGCGGATCTTCTAGGACATGGGATCTTTG 369
||||||||||| | | | ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 300 TAGTAAAGGAC-CTGCTGGTAGAGAGAATCTGGCGGATCTTTTAGGACATGGGATCTTTG 358
Query 370 CTGTTGATGGAGAGAAATGGAGACAACAGAGGAAGCTTTCGAGCTTTGAGTTCTCTACTA 429
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 359 CTGTTGATGGAGAGAAATGGAGACAACAAAGGAAGCTTGCGAGCTTTGAGTTCTCTACTA 418
Query 430 GAGTTTTAAGAGATTTTAGCTGCTCTGTTTTTAGGAGAAATGCATCTAAGCTTGTTGGTT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 419 GAGTTTTAAGAGATTTTAGCTGCTCTGTTTTTAGGAGAAATGCATCTAAGCTTATTGGTT 478
Query 490 TTGTCTCGGAGTTTGCTCTCTCTGGAAAAGCTTTTGATGCTCAAGATTTGTTGATGAGAT 549
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 TTGTCTCGGAGTTTGCTCTCTCTGGAAAAGCTTTTGATGCTCAAGATATGTTGATGAGAT 538
Query 550 GTACACTGGACTCCATCTTTAAAGTTGGGTTTGGTGTGGAGTTAAAATGTTTGGATGGGT 609
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTACATTGGACTCCATCTTTAAAGTTGGGTTTGGTGTGGAGTTAAAATGTTTGGATGGGT 598
Query 610 TTAGCAAAGAAGGGCAAGAGTTTATGGAAGCTTTTGATGAAGGTAACGTTGCAACTAGTT 669
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 TTAGCAAAAAAGGGGAAGAGTTTATGGAGGCTTTTGATGAAGGTAACGTTGCAACTAGTT 658
Query 670 CCAGATTCATCGATCCTCTTTGGAAGCTGAAATGGTTTTTCAACATTGGATCACAATCTA 729
|||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 659 CCAGATACATCGATCCACTTTGGAAGCTGAAATGGTTTCTCAACATTGGATCACAATCTA 718
Query 730 AGCTCAAGAAGAGCATTGCTACTATAGATAAATTTGTCTATAGTCTCATTACCACTAAAA 789
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 AACTCAAGAAGAGTATTGCTACTATAGATAAATTTGTCTATAGTCTCATTACCACAAAAA 778
Query 790 GGAAAGAGCTTGCTAAGGAACAGAACACTGTTGTTAGAGAGGACATACTATCGAGATTCC 849
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 779 GGAAAGAGCTTGCTAAGGAACAGAACACTGTTGTTAGAGAGGACATACTATCGAGATTTC 838
Query 850 TAGTGGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGGGATATAATTC 909
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 839 TAGTGGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGAGATATAATTC 898
Query 910 TGAACTTCATGATTGCTGGTAAGGACACAACCGCTGCACT-ACTCTCTTGGTTCTTGTAC 968
||||||| |||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 899 TGAACTTTATGATTGCTGGTAAGGACACAACCGCTGCA-TCACTTTCTTGGTTCTTGTAC 957
Query 969 ATGCTCTGCAAAAACCCACTTGTTCAGGAGAAAATCGTACAAGAAATCAGAGATGTGACA 1028
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 958 ATGCTCTGCAAAAACCCACTTGTTCAGGAGAAAATCGTTCAAGAAATCAGAGATGTGACA 1017
Query 1029 TTTAGTCACGAGAAAACGACCGATGTAAATGGTTTCGTTGAAAGTATTAACGAAGAGGCT 1088
| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1018 TCAAGTCACGAGAAAACAACCGACGTAAATGGTTTCATTGAAAGTATTAACGAAGAGGCT 1077
Query 1089 CTTGATGAGATGCACTACCTCCATGCAGCCTTGTCTGAGACCTTGAGGCTCTACCCTCCT 1148
|||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 CTTGATCAGATGCAGTATCTCCATGCAGCCTTGTCTGAGACCTTGAGGCTTTACCCTCCT 1137
Query 1149 GTGCCTGTGGACATGAGGTGTGCAGAAAATGATGACGTTCTTCCAGATGGACATAGAGTG 1208
||||||||||||| ||| | |||||||||||||||| |||||||||||||||||||||||
Sbjct 1138 GTGCCTGTGGACACGAGATATGCAGAAAATGATGACATTCTTCCAGATGGACATAGAGTG 1197
Query 1209 AGCAAAGGGGATAATATCTACTACATAGCCTATGCAATGGGTAGGATGACTTACATTTGG 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGCAAAGGGGATAATATCTACTACATAGCCTATGCAATGGGTAGGATGACTTACATTTGG 1257
Query 1269 GGTCAAGATGCTGAAGAATTCAAGCCAGAGAGATGGCTCAAGGACGGCTTATTCCAACCC 1328
|| ||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 1258 GGACAAGATGCTGAGGAATTCAAGCCAGAGAGATGGCTTAAGGACGGCGTGTTCCAACCC 1317
Query 1329 GAATCACCATTCAAATTCATAAGCTTTCATGCTGGTCCAAGAATCTGTCTTGGCAAGGAT 1388
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GAATCACCATTCAAATTTATAAGCTTTCATGCTGGTCCAAGAATCTGTCTTGGCAAGGAT 1377
Query 1389 TTCGCATACCGGCAGATGAAGATAGTATCAATGGCACTTCTTCACTTCTTTCGCTTCAAA 1448
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1378 TTCGCATACCGGCAAATGAAGATAGTAGCAATGGCACTTCTTCACTTCTTTCGCTTCAAA 1437
Query 1449 ATGGCTGATGAGAACAGCAAGGTGTATTACAAGAGAATGCTTACTCTTCATGTCGATGGA 1508
|||||||||||||| ||||| |||| |||||||| ||||||||| ||||||||||| |||
Sbjct 1438 ATGGCTGATGAGAAGAGCAATGTGTGTTACAAGACAATGCTTACACTTCATGTCGAAGGA 1497
Query 1509 GGACTCCATCTCTGTGCAATCCCGAGGACAAGCACTTGA 1547
||||||||||| || ||||| ||||||||||||||||||
Sbjct 1498 GGACTCCATCTATGCGCAATTCCGAGGACAAGCACTTGA 1536
> Ahg483688 jgi|Araly1|483688|fgenesh2_kg.4__2748__AT2G44890.1
Length=1485
Score = 1230 bits (666), Expect = 0.0
Identities = 884/988 (89%), Gaps = 20/988 (2%)
Strand=Plus/Plus
Query 12 ATGGAGATTTTGACGAGCATAGCTATTACAGTAGCAACAACGATCTTCATCGTTTTGT-G 70
|||||||||||||||||||| || |||| ||| | ||||||||||||||||||| |||
Sbjct 1 ATGGAGATTTTGACGAGCATGGCAATTATAGTTGTAACAACGATCTTCATCGTTCTGTCT 60
Query 71 TTT-CACTATCTATCTTATGATCAGAATCTTTACCGGGAAATCAAGAAACGACAAGAGAT 129
||| ||| ||||||| | |||||||||||| ||||||||||| |||||||||||||| |
Sbjct 61 TTTGCAC--TCTATCTCACGATCAGAATCTTCACCGGGAAATCCAGAAACGACAAGAGGT 118
Query 130 ATGCTCCAGTGCATGCCACGGTCTTTGATCTTCTCTTCCACAGCGACGAGTTATACGATT 189
|| ||||||| || ||||| |||| |||||| ||||||| |||||| | ||||||||||
Sbjct 119 ATACTCCAGTACACGCCACAATCTTCGATCTTTTCTTCCATAGCGACAAATTATACGATT 178
Query 190 ACGAGACAGAGATCGCGA-GAGAGAAGCCGACTTACAGGTTTTTGAGTCCAGGACAGAGC 248
|||||||||||||||||| || | ||||| |||| |||||| ||||||||||||||||||
Sbjct 179 ACGAGACAGAGATCGCGAGGACA-AAGCCTACTTTCAGGTTCTTGAGTCCAGGACAGAGC 237
Query 249 GAGATATTAACTGCAGATCCTCGTAACGTGGAGCATATTCTCAAGACAAGATTCGATAAC 308
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 238 GAGATATTGACTGCAGATCCTCGGAACGTGGAGCATATTCTCAAGACAAGATTCGATAAC 297
Query 309 TATAGTAAAGGACACAGTAG-TAGAGAGAATATGGCGGATCTTCTAGGACATGGGATCTT 367
||||||||||||| | || | |||||||||| | ||||||||| | |||||||| |||||
Sbjct 298 TATAGTAAAGGACCC-GTTGGTAGAGAGAATCTTGCGGATCTTTTGGGACATGGAATCTT 356
Query 368 TGCTGTTGATGGAGAGAAATGGAGACAACAGAGGAAGCTT-TCGAGCTTTGAGTTCTCTA 426
||||| ||||||||||||||||| |||||| ||||||||| | |||||||||||||||||
Sbjct 357 TGCTGCTGATGGAGAGAAATGGAAACAACAAAGGAAGCTTGT-GAGCTTTGAGTTCTCTA 415
Query 427 CTAGAGTTTTAAGAGATTTTAGCTGCTCTGTTTTTAGGAGAAATGCATCTAAGCTTGTTG 486
|||||||||||||| |||||||||||||||||||| ||| || ||| || |||||||||
Sbjct 416 CTAGAGTTTTAAGAAATTTTAGCTGCTCTGTTTTTCGGACAAGTGCTTCAAAGCTTGTTA 475
Query 487 GTTTTGTCTCGGAGTTTGCTCTCTCTGGAAAAGCTTTTGATGCTCAAGATTTGTTGATGA 546
||||||| |||||||||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct 476 GTTTTGTTTCGGAGTTTGCTCTCTCTGGAAAACCTTTTGATGCTCAGGATATGTTGATGA 535
Query 547 GATGTACACTGGACTCCATCTTTAAAGTTGGGTTTGGTGTGGAGTTAAAATGTTTGGATG 606
|||||||| | ||||| |||||||||||||||||||||||||| ||| |||| | ||||
Sbjct 536 GATGTACAATAGACTCGATCTTTAAAGTTGGGTTTGGTGTGGAACTAAGATGTCTAGATG 595
Query 607 GGTTTAGCAAAGAAGGGCAAGAGTTTATGGAAG-CTTTTGATGAAGGTAACGTTGCAACT 665
||||||||||||||||| ||||||| ||| ||| ||||||||||||| ||||||||||||
Sbjct 596 GGTTTAGCAAAGAAGGGGAAGAGTTCATG-AAGGCTTTTGATGAAGGCAACGTTGCAACT 654
Query 666 AGTTCCAGATTCATCGATCCTCTTTGGAAGCTGAAATGGTTT-TTCAACATTGGATCACA 724
|||||||| |||| |||||| ||||||||||||||||| ||| || |||||||||||| |
Sbjct 655 AGTTCCAGGTTCACCGATCCGCTTTGGAAGCTGAAATGTTTTCTT-AACATTGGATCAGA 713
Query 725 ATCTA-AGCTCAAGAAGAGCATTGCTACTATAGATAAATTTGTCTATAGTCTCATTACCA 783
|||| | ||| |||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct 714 GTCTAGA-CTCCAGAAGAGCGTTGCTACTATAGACAAGTTTGTCTATAGTCTCATTACCA 772
Query 784 CTAAAAGGAAAGAGCTTGCTAAGGAACA-GAACACTGTTGTTAGAGAGGACATACTATCG 842
||||||||||||||||||| |||||||| || ||||| ||||||||||||||| ||||||
Sbjct 773 CTAAAAGGAAAGAGCTTGCCAAGGAACATGA-CACTGCTGTTAGAGAGGACATCCTATCG 831
Query 843 AGATTCCTAGTGGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGGGAT 902
| ||| || | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 832 AAATTTCTTCTCGAGAGTGAGAAAGATCCGGAGAACATGAATGATAAGTACCTGAGAGAT 891
Query 903 ATAATTCTGAACTTCATGATTGCTGGTAAGGACACAACCGCTGCA-CTACTCTCTTGGTT 961
|| ||| |||| |||||| |||||||||||||||||||||||||| || || ||||||||
Sbjct 892 ATCATTTTGAATTTCATGGTTGCTGGTAAGGACACAACCGCTGCATCT-CTTTCTTGGTT 950
Query 962 CTTGTACATGCTCTGCAAAAACCCACTT 989
||||||||||||||||||||||||||||
Sbjct 951 CTTGTACATGCTCTGCAAAAACCCACTT 978
Score = 756 bits (409), Expect = 0.0
Identities = 475/507 (94%), Gaps = 4/507 (1%)
Strand=Plus/Plus
Query 1043 AACGACCGATGTAAATGGTTTCGTTGAAAGTATTAA-CGAAGAGGCTCTTGATGAGATGC 1101
||| || ||||||||||||||| ||| |||| ||| ||||||| |||||| | ||||||
Sbjct 981 AACAACTGATGTAAATGGTTTCATTGGAAGT-GTAACCGAAGAGACTCTTGCTCAGATGC 1039
Query 1102 ACTACCTCCATGCAGCCTTGTCTGAGACCT-TGAGGCTCTACCCTCCTGTGCCTGTGGAC 1160
| || |||||||| ||||||||||||| || ||||||| |||||||||||||||| ||||
Sbjct 1040 AGTATCTCCATGCGGCCTTGTCTGAGA-CTCTGAGGCTTTACCCTCCTGTGCCTGAGGAC 1098
Query 1161 ATGAGGTGTGCAGAAAATGATGACGTTCTTCCAGATGGACATAGAGTGAGCAAAGGGGAT 1220
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 ATGAGGTGTGCAGGAAATGATGACGTTCTTCCAGATGGACATAGAGTGAGCAAAGGGGAT 1158
Query 1221 AATATCTACTACATAGCCTATGCAATGGGTAGGATGACTTACATTTGGGGTCAAGATGCT 1280
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1159 AATGTCTACTACATAGCCTATGCAATGGGTAGGATGACTTACATTTGGGGTCCAGATGCT 1218
Query 1281 GAAGAATTCAAGCCAGAGAGATGGCTCAAGGACGGCTTATTCCAACCCGAATCACCATTC 1340
|| ||||||||||||||||||||||||||||||||| | |||||| |||||| |||||||
Sbjct 1219 GAGGAATTCAAGCCAGAGAGATGGCTCAAGGACGGCGTGTTCCAAACCGAATTACCATTC 1278
Query 1341 AAATTCATAAGCTTTCATGCTGGTCCAAGAATCTGTCTTGGCAAGGATTTCGCATACCGG 1400
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1279 AAATTCATAAGCTTTCATGCTGGTCCAAGAATCTGTCCAGGCAAGGATTTTGCATACCGG 1338
Query 1401 CAGATGAAGATAGTATCAATGGCACTTCTTCACTTCTTTCGCTTCAAAATGGCTGATGAG 1460
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 CAAATGAAGATAGTATCAATGGCACTTCTTCACTTCTTTCGCTTCAAAATGGCTGATGAG 1398
Query 1461 AACAGCAAGGTGTATTACAAGAGAATGCTTACTCTTCATGTCGATGGAGGACTCCATCTC 1520
||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1399 AACAGCAAGGTGTGTTACAAGAGGATGCTTACACTTCATGTCGATGGAGGACTCCATCTC 1458
Query 1521 TGTGCAATCCCGAGGACAAGCACTTGA 1547
|||||||||||||||||||||||||||
Sbjct 1459 TGTGCAATCCCGAGGACAAGCACTTGA 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5