BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45520.1
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346362 jgi|Araly1|346362|fgenesh1_pg.C_scaffold_4002704 948 0.0
> Ahg346362 jgi|Araly1|346362|fgenesh1_pg.C_scaffold_4002704
Length=618
Score = 948 bits (513), Expect = 0.0
Identities = 585/620 (94%), Gaps = 4/620 (1%)
Strand=Plus/Plus
Query 35 atgggagggaaaggaaaaaagaggagagagaaaaaTTACCTAGCTGCTCACGGCGGACCG 94
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1 ATGGGAGGGAAAGGAAAAAAGAGGAGAGAGAAAAACTACCTAGCTGCCCACGGCGGACCG 60
Query 95 GCGAGACTTCCGCCGCCGCCTGATCGTTCGAAGCAAGATGATGTTCCTTCTACGCTCCGT 154
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GCGAGACTTCCGCCGCCGCCTGATCGTTCGAAGCAAGATGATGTTCCTTCTAAGCTCCGT 120
Query 155 ATCCTCATGAACTACACTTCTCCTTCTCCCCATGATTCTACTAAACAAGTCGTAGAGAAG 214
|| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 121 ATTCTCATGAACTACACTTCTCCGTCTCCTCACGATTCTACTAAACAAGTCGTAGAGAAG 180
Query 215 AAGGAAAAGCTTAAGAAAGCTGAAGTAGTTGTTCCTGCAACGGAGAGTGATGGAGATGAT 274
||||||||| |||||||| | |||| || |||| ||||||||||||||||||||||||||
Sbjct 181 AAGGAAAAGATTAAGAAATCCGAAGAAGATGTTACTGCAACGGAGAGTGATGGAGATGAT 240
Query 275 AGTGTGGTGGagaagaagaagaaaaagaggaagagaaaTCAAATGACGGATCTTCGTTTT 334
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TGTGTGGTGGAGAGGAAGAAGAAAAAGAGAAAGAGAAATCAAATGACGGATCTTCGTTTC 300
Query 335 GAAAACGAACTTGCAGAGATT-GATGGTCGGTCTaaaaggaaagaacgcaagaagaagta 393
||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAAATGAACTTGCGGAG-TTGGATGGTCGGTCTAAAAGGAAAGAACGCAAGAAGAAGTA 359
Query 394 ttgggaggccaagaagcaaaagaagaataaaggaaagactgaagaTACCCTCCGTGAAAA 453
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 TTGGGAGGCCAAGAAACAAAAGAAGAATCAAGGAAAGACTGAAGATACCCTCCGTGAAAA 419
Query 454 CTTCCCCAAGCATGAACAGATAAGATTTGGTGATGTTGTGCAAGCTCCACTTAAGTTGGC 513
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 420 CTTCCCCAAGCATGAACAGATAAGATTTGGTGATGTTGTGCAAGCTCCACCTAAGTTGGC 479
Query 514 TGTTGTTCCGAAGGCAAGAAAGTCTACTCTAAGTGCTTCCCAGGAGAGGCTGCGATTACA 573
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 TGTGGTTCCAAAGGCAAGAAAGTCTACTCTAAGTGCTTCCCAGGAGAGGCTGCGATTAGA 539
Query 574 AGCCATCGATGCTTACAGATCACGCAAGGGATGGACCGCTAGACCAGGTGTTCCGATTCC 633
|||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |||||
Sbjct 540 GGCCATCGATGCTTACAGATCTCGCAAGGGATGGATCGCAAGACCAGGTGTTCCCATTCC 599
Query 634 TGCCGT-GATGATGCAATAA 652
|||||| | | |||||||||
Sbjct 600 TGCCGTTG-TCATGCAATAA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30155227347
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5