BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45530.1
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483690 jgi|Araly1|483690|fgenesh2_kg.4__2750__AT2G45530.1 1445 0.0
> Ahg483690 jgi|Araly1|483690|fgenesh2_kg.4__2750__AT2G45530.1
Length=994
Score = 1445 bits (782), Expect = 0.0
Identities = 881/926 (95%), Gaps = 17/926 (2%)
Strand=Plus/Plus
Query 18 AAAGTaaaaaaaaGTTGAATCTCTGTTTTTCGTCTGGTCCCATAGTGAATCGTGGCTCAG 77
||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 AAAGTCAAAAAAAGTTGAATCTCTGTTTTTCGTCTGGTCCCATAGTGAATC---G-T--- 53
Query 78 ATGGCTTCCTAGGGTTTGTGGAAATCGGA-GAGGGGAATACAGATTTGAGATGCAAAGTA 136
||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 54 ATGGCTTCCTAGGGTTTGTGG-AAT-TGATAAGGGGAATACAGATTTGAGATGCAAAGTA 111
Query 137 GCTCCAGCTCC---GGTGGTGACGACCTTGAAAagcagcagcagcagcagcagAAGGACA 193
||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 112 GCTCCAGCTCCGGTGGTGGTGACGACCTTG-AAA--AGCAGCAGCAGCAGCAGAAGGACA 168
Query 194 AGTCTCCCCAGAAGCAGAGCGAGTCAGCCAATGAATCGAACCACCTCACAATCGTTGTCT 253
|| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 169 AGGCTCACCAGAAGCAGAGCGAGTCAGCCAATGAATCCAACCACCTCACAATCGTTGTCT 228
Query 254 GCAATGGAGATTCTAGTCGGGAAGAATTGGTGGGTCAGATCCCACCGGAAAAGGAGGTTA 313
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 229 GCAATGGAGATTCTAGTCGGGAAGAATTGGTGGCTCAGATCCCACCGAAAAAGGAGGTTA 288
Query 314 GCTTATCCAGAAACGGAAGCTCGCACGAGCAGTGCAGGGTTTGTCTACAAGACAAAGAAG 373
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 289 GCTTATCCAGAAACGGAAGCTCTCACGAGCAGTGCAGGGTTTGTCTACAAGAGAAAGAAG 348
Query 374 AGGTTTTGATTGAACTAGGTTGTCAATGTCGTGGTGGTCTTGCTAAAGCTCACAGGTCTT 433
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 349 AGGTTTTGATTGAACTAGGTTGTCAATGTCGTGGTGGTCTTGCTAAAGCTCATAGGTCTT 408
Query 434 GTATAGATGCTTGGTTTCGTACTAAAGGCTCTAACCAGTGTGAGATCTGTCAAGTTGTTG 493
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 409 GTATAGATGCTTGGTTTCGTACTAAAGGCTCTAATCAGTGTGAGATCTGTCAAGTTGTTG 468
Query 494 CTGTTAATGTCACACCTCCTGAGACTCAACCAACTACAAACTATTGGGTTTGGAGGATTG 553
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 469 CTGTTAATGTCACACCTCCTGAGACTCAACCAACTACAAATTATTGGGTTTGGAGGATTG 528
Query 554 ATCCTAGCTATAGACAAGAAGAGCGTGAGAGAGGATGCTTTAGTCCGCTTTGGGTTGCAT 613
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 529 ATCCTAGCTATAGACAAGAGGAGCGTGAGAGAGGATGTTTTAGTCCGCTTTGGGTTGCAT 588
Query 614 TTTCGATTCTGATCGGTGGTTTAATGCTTGATGTGTTGATATCTATCACACTTGGGGTCT 673
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 589 TCTCGATTCTGATTGGTGGTTTAATGCTTGATGTGTTGATATCTATCACACTCGGGGTCT 648
Query 674 CTGCGCTTCCGGTGAACATCATTATTGGAGTCATAGTTGTGCTTGGGCTAGGAACAGCTC 733
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 649 CTGCGCTTCCCGTGAACATCATCATTGGAGTCATAGTGGTGCTTGGGCTAGGAACTGCTC 708
Query 734 TAAGGCTGACTTTGGAGTTCTGTTATGAGTGGAGCTTGAGAAGAGCGGTTCACAGGGCGG 793
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 709 TAAGGCTGACTTTGGAGTTCTGTTATGAGTGGAGCTTGAGAAGAGCCGTCCACAGGGCGG 768
Query 794 TGCAGAGGGCGGAAGCGAACAACTTCAGTAATATTGCGTACCCACCTGCCTTGTAGGGGG 853
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 769 TGCAGAGGGCGGAAGCAAACAACTTCAATAATATTGCGTACCCACCTGCCTTGTAGGGGG 828
Query 854 GAAACTATGTCAAGTTAAAAACTCGTGTGTGTGTAAAAGTTGTGTGAGACGTGTAGAACT 913
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 829 GAAACTATGTCAAGTTAAAA-CTCGTGTGTATGTAAAAGTTGTGTGAGACGTGTACAACT 887
Query 914 ACAATGCTGGATTTGTTGGGAAAGAA 939
||||||||||||||||||||||||||
Sbjct 888 ACAATGCTGGATTTGTTGGGAAAGAA 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5