BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45560.1
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346366 jgi|Araly1|346366|fgenesh1_pg.C_scaffold_4002708 1447 0.0
Ahg902591 jgi|Araly1|902591|Al_scaffold_0004_3241 1351 0.0
Ahg322211 jgi|Araly1|322211|fgenesh1_pm.C_scaffold_4002268 239 7e-62
> Ahg346366 jgi|Araly1|346366|fgenesh1_pg.C_scaffold_4002708
Length=1539
Score = 1447 bits (783), Expect = 0.0
Identities = 1300/1547 (84%), Gaps = 45/1547 (3%)
Strand=Plus/Plus
Query 157 ATGGACATAATCTCAGGGCAAGC---TCTGTTACTCCTCTTTTGCTTTATCTTATCATGT 213
|||||||| |||| | ||||| |||||| ||||||||||||||||||||||||| |
Sbjct 1 ATGGACATCATCTTTGAACAAGCTTATCTGTTCCTCCTCTTTTGCTTTATCTTATCAT-T 59
Query 214 TTT-CTTATCTTCACCACCACAAGAT-CTGGACGAATCTCCCGC-GGGGC-CACCGCGCT 269
||| ||||||||||||| ||||||| | ||| | ||| ||| || | | || |
Sbjct 60 TTTCCTTATCTTCACCATAACAAGATCCCGGA-G---CTCTCGCAAGGTCGCTCC-ATC- 113
Query 270 GCCTCCAGGACCTCCACGGTTACCGATCATCGGAAATATTCACCTCGTCGG-AAAACATC 328
||||||||||||||| ||| |||| ||||||||||| |||||||| ||||| |||| | |
Sbjct 114 GCCTCCAGGACCTCCGCGGCTACCCATCATCGGAAACATTCACCTTGTCGGTAAAA-ACC 172
Query 329 CACATCGCTCATTCGCCGAGCTCTCAAAAACTTATGGACCAGTCATGAGTCTTAAGCTTG 388
|||| | ||||||||||| ||||||||||| ||||||||| ||||||| ||||| |||
Sbjct 173 CACACCATTCATTCGCCGACCTCTCAAAAACATATGGACCAATCATGAGCCTTAAATTTG 232
Query 389 GAAGTTTAAATACAGTGGT--TATAGCTTCACCAGAAGCTGCGAGAGAGGTTTTACGAAC 446
|||||||||| |||||||| || || ||||||||||||||| ||||||||| || ||||
Sbjct 233 GAAGTTTAAACACAGTGGTCGTA-AG-TTCACCAGAAGCTGCAAGAGAGGTTCTAAGAAC 290
Query 447 ACATGACCAGATTTTGTCTGCCCGTAGTC-CCACTAACGCGGTACGGTCCATCAATCACC 505
| | ||||| || | ||| |||||| | |||||||| || |||||| ||| |||||||
Sbjct 291 ATACGACCAAATCCTCTCTAACCGTAG-CTCCACTAACTCGATACGGTTCATTAATCACC 349
Query 506 AAGACGCTTCCCTTGTCTGGCTTCCTTCGTCGTCCG-CTCGTTGGAGGCTGTTGAGAAGG 564
| || | |||| ||||||||||||| | |||| || |||||||||| || ||||||
Sbjct 350 ACGAGGTTTCCGTTGTCTGGCTTCCACCATCGT-CGCCTCGTTGGAGACTACTGAGAAAA 408
Query 565 CT-GTCGGTGACTCAGCTCTTGTCACCACAGCGTATCGAAGCCACGAAAGCCTTGA-GGA 622
|| | | | |||||||||||| || || |||||| |||||||||||||| | |||| |||
Sbjct 409 CTAG-CTGCGACTCAGCTCTTCTCGCCTCAGCGTCTCGAAGCCACGAAAACGTTGAGGGA 467
Query 623 TGAACAAGGTGAAGGAACTTGTGAGCTTCATAAGTGAAAGCAGCGATAGGGAAGAATCTG 682
|||||||||||||||||| |||||||||||||||||||||||||| || |||||| |||
Sbjct 468 -GAACAAGGTGAAGGAACTCGTGAGCTTCATAAGTGAAAGCAGCGAAAGAGAAGAAGCTG 526
Query 683 TTGATATTTCTCGTGTAGCCTTCATCACAACTCTTAATATCATATCGAACATTCTGTTTT 742
||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||
Sbjct 527 TTGATATTTCTCGTGCAACCTTCATCACAGCTCTTAATATCATATCAAACATTCTGTTTT 586
Query 743 CCGTCGATCTCGGTAGCTACAACGCGAAAGCTTCTATTAATGGGGTTCAAGACACGGTGA 802
| || ||||||||||||||| || ||||| || | | ||| |||| ||||||||||
Sbjct 587 CTGTAGATCTCGGTAGCTACGACTCGAAAAAATCCA--GA-GGGTTTCAGGACACGGTGA 643
Query 803 TTAGTGTTATGGATGCTGCCGGGACTCCAGACGCTGCTAA-TTACTTTCCATTTCTGAGG 861
|| |||| ||||| |||| |||| |||||||||||||| || ||| ||||||||| ||
Sbjct 644 TTGGTGTCATGGAAGCTGTAGGGAAGCCAGACGCTGCTAACTT-CTTCCCATTTCTGGGG 702
Query 862 TTTCTTGATCTGCAAGGTAATGTG-AAGACTTTTAAGGTTTGCACGGAGAGGCTG-GTAA 919
||||||||||||||||||||| | |||||| | |||| ||| | ||||| || |||
Sbjct 703 TTTCTTGATCTGCAAGGTAAT-AGAAAGACTCTGAAGGCTTGTTCCGAGAGATTGTTTAA 761
Query 920 GGGTTTTCCGTGGGTTCATTGATGCTAAGATTGCGGAAAAATCATCGCAG-A-A-TAACC 976
||||||||||||||||||||||||||| || ||||||||||| | || | | | |||||
Sbjct 762 -GGTTTTCCGTGGGTTCATTGATGCTAAAATAGCGGAAAAATCGTTGCGGAATATTAACC 820
Query 977 CTAAAGATGTTTC-AAAAAACGATTTCGTTGACAACCTTCTCGAT-T-AC-AAAGGAGAT 1032
|||||||||| || | | | ||||| || || ||||||||| | || |||||||
Sbjct 821 CTAAAGATGTCTCGGAGAGA-GATTTTGTGGATGTGCTTCTCGATCTCACTGAAGGAGAA 879
Query 1033 GAATCAGAACTCTCCATTAGCGATATTGAACACCTTCTCTTGGATATGTTTACAGCAGGC 1092
||| |||| ||| || || |||||||||||||||||||||||| | ||| ||| ||
Sbjct 880 GAACCAGAGCTCAACACTAACGATATTGAACACCTTCTCTTGGACCTATTTGGAGCGGGG 939
Query 1093 ACGGATACAAGCTCTAGTACCCTGGAGTGGGCAATGACAGAGTTACTTAAAAACCCTAAA 1152
|| || |||| |||||||||| |||| ||||||||| ||||||||||| ||||||| ||
Sbjct 940 ACAGACACAAACTCTAGTACCGTGGAATGGGCAATGGCAGAGTTACTTCGAAACCCTGAA 999
Query 1153 ACGATGGCGAAAGCTCAGGCCGAGATCGATTGTGTGATAGGTCAAAACGGTATCGTTGAA 1212
|| |||||||| |||||||| |||||||| |||||| |||||||| ||| | ||| ||
Sbjct 1000 ACAATGGCGAAGGCTCAGGCTGAGATCGACAATGTGATTGGTCAAAAAGGTGTTGTTAAA 1059
Query 1213 GAGTCAGATATCTCCAAACTGCCGTATTTACAAGCAGTCGTGAAGGAAACTTTCCGGTTA 1272
||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1060 GAGTCTGATATCTCGGAACTGCCCTATTTACAAGCAGTTGTGAAGGAAACTTTCCGGTTA 1119
Query 1273 CATACGCCTGTTCCGCTTCTTATCCCGCGAAAAGCCGAATCCGATGCGGAGATTCTTGGT 1332
||| || ||| ||| |||||| |||| |||||||| |||| ||||| |||| |||||||
Sbjct 1120 CATCCGGCTGCTCCTCTTCTTGTCCCACGAAAAGCGGAATTCGATGTGGAGGTTCTTGGA 1179
Query 1333 TTCATGGTGCTTAAAGATACTCAGGTTCTAGTGAACGTCTGGGCCATAGGACGAGACCCG 1392
||| | || | |||||| |||||||| | |||||||| |||||||||||||||||||||
Sbjct 1180 TTCCTCGTACCTAAAGACGCTCAGGTTTTGGTGAACGTGTGGGCCATAGGACGAGACCCG 1239
Query 1393 AGCGTGTGGGATAATCCGTCCCAGTTTGAGCCAGAGAGGTTTTTGGGGAAAGATATGGAC 1452
||||| ||||| |||||||||| ||||||||||||||||||| |||||||||| || |||
Sbjct 1240 AGCGTATGGGAGAATCCGTCCCGGTTTGAGCCAGAGAGGTTTATGGGGAAAGAAATCGAC 1299
Query 1453 GTGAGAGGTAGAGATTATGAGCTTACACCATTCGGAGCCGGACGTAGAATTTGCCCGGGA 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GTGAGAGGTAGAGATTATGAGCTTACACCATTCGGAGCCGGACGTAGAATTTGCCCGGGA 1359
Query 1513 ATGCCTTTGGCTATGAAAACAGTGTCTCTTATGCTTGCTTCTCTTCTTTATTCCTTTGAC 1572
||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1360 TTGCCTTTGGCTGTGAAAACAGTGCCTCTAATGCTTGCTTCTCTTCTTTATTCCTTTGAT 1419
Query 1573 TGGAAGCTTCCGAAGGGTGTCCTTTCGGAGGATTTGGACATGGACGAGACCTTTGGTCTA 1632
||||||||||| || || ||| |||| ||||||||||| |||||||||| ||| |||||
Sbjct 1420 TGGAAGCTTCCAAATGGCGTCATTTCTGAGGATTTGGATATGGACGAGAGCTTCGGTCTC 1479
Query 1633 ACTTTGCATAAGACCAACCCGTTACATGCCGTACCCGTCAAGAAACG 1679
|| |||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1480 ACATTGCATAAAACCAACCCGTTACATGCCGTTCCCGTCAAGAAACG 1526
> Ahg902591 jgi|Araly1|902591|Al_scaffold_0004_3241
Length=918
Score = 1351 bits (731), Expect = 0.0
Identities = 834/884 (94%), Gaps = 6/884 (1%)
Strand=Plus/Plus
Query 205 TTATCATGTTTTCTTATCTTCACCACCACAAGATCTGGACGAATCTCCCGCGGGGCCACC 264
||||||||||||||||||||||||||||||||||||||||||| ||| | |||| || |
Sbjct 4 TTATCATGTTTTCTTATCTTCACCACCACAAGATCTGGACGAAACTCTCACGGGACCTTC 63
Query 265 GCGCTGCCTCCAGGACCTCCACGGTTACCGATCATCGGAAATATTCACCTCGTCGGAAAA 324
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GCTCTGCCTCCAGGACCTCCACGGTTACCGATCATCGGAAATATTCACCTCGTCGGAAAA 123
Query 325 CATCCACATCGCTCATTCGCCG-AGCTCTCAAAAACTTATGGACCAGTCATGAGTCTTAA 383
|||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||
Sbjct 124 CATCCACATCGCTCATTCGCTGCA-CTCTCGAAAACTTATGGACCAGTCATGAGTCTTAA 182
Query 384 GCTTGGAAGTTTAAATACAGTGGTTATAGCTTCACCAGAAGCTGCGAGAGAGGTTTTACG 443
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 183 GCTTGGAAGTTTAAATACAGTGGTTATAGCTTCACCAGAAGCTGCAAGAGAGGTTTTACG 242
Query 444 AACACATGACCAGATTTTGTCTGCCCGTAGTCCCACTAACGCGGTACGGTCCATCAATCA 503
||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 243 AACACATGAGCAGATTTTGTCTGGCCGTAGTCCCACTAACGCGATACGGTCCATCAATCA 302
Query 504 CCAAGACGCTTCCCTTGTCTGGCTTCCTTCGTCGTCCGCTCGTTGGAGGCTGTTGAGAAG 563
|||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 303 CCAAGATGCTTCCCTTATCTGGCTTCCTTCGTCGTCTGCTCGTTGGAGGCTGTTTAGAAG 362
Query 564 GCTGTCGGTGACTCAGCTCTTGTCACCACAGCGTATCGAAGCCACGAAAGCCTTGAGGAT 623
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 363 GCTGTCGGTGACTCAGCTCTTGTCACCACAGCGTATCGAAGCCACGAAAGCATTGAGGGT 422
Query 624 GAACAAGGTGAAGGAACTTGTGAGCTTCATAAGTGAAAGCAGCGATAGGGAAGAATCTGT 683
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 423 GAACAAGGTGAAGGAACTTGTGAGCTTCATAAGTGAAAGCAGCGATAGAGAAGAATCTGT 482
Query 684 TGATATTTCTCGTGTAGCCTTCATCACAACTCTTAATATCATATCGAACATTCTGTTTTC 743
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 483 TGATATTTCTCGTGTATCCTTCATCACAACTCTTAATATCATATCGAACGTTCTGTTTTC 542
Query 744 CGTCGATCTCGGTAGCTACAACGCGAAAGCTTCTATTAATGGGGTTCAAGACACGGTGAT 803
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 543 CGTCGATCTCGGCAGCTACAACGCGAAAGCTTCTATTAACGGGGTTCAAGACACGGTGAA 602
Query 804 TAGTGTTATGGATGCTGCCGGGACTCCAGACGCTGCTAATTACTTTCCATTTCTGAGGTT 863
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 603 TAGTGTTATGGGTGCTGTCGGGAATCCAGACGCTGCTAATTACTTTCCATTTCTGGGGTT 662
Query 864 TCTTGATCTGCAAGGTAAT-GTGAAGACTTTTAAGGTTTGCACGGAGAGGCTGGTAAGGG 922
||||||||||||||||||| | ||||||| | ||||||||||||||||||||| ||||||
Sbjct 663 TCTTGATCTGCAAGGTAATAG-GAAGACTATGAAGGTTTGCACGGAGAGGCTGATAAGGG 721
Query 923 TTTTCCGTGGGTTCATTGATGCTAAGATTGCGGAAAAATCATCGCAGAATAACCCTAAAG 982
||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 722 TTTTCCGTGGGTTCATTGATGCTAAGATTGCAGAAATTTTTTCGCAGAATAACCCTAAAG 781
Query 983 ATGTTTCAAAAAACGATTTCGTTGACAACCTTCTCGATTACAAAGGAGATGAATCAGAAC 1042
|||||||||| ||||||||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct 782 ATGTTTCAAACAACGATTTCGTAGACAACCTTCTCGATTTCAAAGGAGATGAAACAGAAC 841
Query 1043 TCTCCATTAGCGATATTGAACACCTTCTCTTGGATATGT-TTAC 1085
|| ||||||||||||||||||||||||||||| || || ||||
Sbjct 842 TCAACATTAGCGATATTGAACACCTTCTCTTGG-TAAGTCTTAC 884
> Ahg322211 jgi|Araly1|322211|fgenesh1_pm.C_scaffold_4002268
Length=1542
Score = 239 bits (129), Expect = 7e-62
Identities = 452/602 (75%), Gaps = 45/602 (7%)
Strand=Plus/Plus
Query 1096 GATACAAGCTCTAGTACCCTGGAGTGGGCAATGACAGAGTTACTT-AAAAACCC-TAAAA 1153
||||||| ||| ||||| |||||||||||||||| |||||| || | ||| | ||
Sbjct 946 GATACAAACTCAAGTACAATGGAGTGGGCAATGACGGAGTTA-TTCCGTAGCCCGGAGAA 1004
Query 1154 CGATGGCGAAAGCTCAG-GCCGAGAT-CGATTGTGTGATAGGTCAAAACGGTATCGTTGA 1211
||||| ||||||||| | ||||| || ||||| ||| |||||||| ||||| |
Sbjct 1005 -GATGGTTAAAGCTCAGAG-TGAGATACG-GCAAGTGATTGGTGAAAACGGTGTCGTTCA 1061
Query 1212 AGAGTCAGATATCTCC-AAACTGCCGTATTTACAAGCAGTCGTGAAGGAAACT-TTCCGG 1269
||| || |||||| || | ||||| || ||||||||| | ||||| || ||| || ||
Sbjct 1062 AGAATCTGATATC-CCGAGTCTGCCTTACTTACAAGCAATTGTGAAAGAGACTCTT-CGT 1119
Query 1270 TTACATACGCCTGTTCCGCTTC-TT-ATCCCGCGAAAAGCCGAATCCGATGCGGAGATTC 1327
|| ||| |||| | ||| | || ||||| ||||| | |||||||||| |||||
Sbjct 1120 TTGCAT---CCTG--CAGCTCCTTTGATCCCTAGAAAATCGGAATCCGATGTTCAGATT- 1173
Query 1328 TT-GGTTTCAT-GGTGCTTAAAGATACTCAGGTTCTAGTGAACGTCTGGGCCATAGGACG 1385
|| |||||| | | | || | | | || ||||||||||||||||||||||||||||||||
Sbjct 1174 TTGGGTTTCCTCGTTCCTGAGA-ACACCCAGGTTCTAGTGAACGTCTGGGCCATAGGACG 1232
Query 1386 AGACCCGAGCGTGTGGGATAATCCG-TCCCAGTTTGAGCCAGAGAGGTTTTTGGGGAA-A 1443
|||| ||||||||||||||||||| | |||| ||||||||||| || ||| | |
Sbjct 1233 AGACTCGAGCGTGTGGGATAATCCAATGA-AGTTCGAGCCAGAGAGATTCTTGTT-ACGA 1290
Query 1444 GATATGGA-CGTGAGAGGTAGAGATTATGAGCTT-ACACCATTCGGAGCC-GGACGTAGA 1500
|| | || | | | ||| | ||||| |||| || | |||||| || | | ||| | ||
Sbjct 1291 GAAACCGATC-TAAAAGGCAAAGATTTTGAG-TTGATACCATTTGG-GTCAGGAAGAAGG 1347
Query 1501 ATTTGCCCGGGAATGC-CTTTGGCTATGAAAACAGTGTC-TCTTATGCTTGCTTCTCTTC 1558
|| || |||||||| | | ||||| | || ||| || | | | ||||||| |||||||
Sbjct 1348 ATGTGTCCGGGAAT-CTCGATGGCTCTTAAGACAATG-CATATGGTGCTTGCCTCTCTTC 1405
Query 1559 TTTATTCCTTTGACTGGAAGCTTCCGAAGGGTGTCCTTTCGGAGGATTTGGACATG-GAC 1617
||||||||||||||||||||||||| || || ||| | | || | | |||||| | |
Sbjct 1406 TTTATTCCTTTGACTGGAAGCTTCCAAACGGCGTCGTCCCTGAAAACATAGACATGAG-C 1464
Query 1618 GAGACCTTT-GGTCTAACTTTGCATAAGACCAA-CC-CGTTACATGCCGTACCCGTCAAG 1674
||| | ||| ||||| || ||||| ||| |||| || | || ||||||||||||||||
Sbjct 1465 GAGGC-TTTCGGTCTTACCTTGCACAAGGCCAAACCTCTTTG--TGCCGTACCCGTCAAG 1521
Query 1675 AA 1676
||
Sbjct 1522 AA 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76485211960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5