BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45580.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322211 jgi|Araly1|322211|fgenesh1_pm.C_scaffold_4002268 2368 0.0
> Ahg322211 jgi|Araly1|322211|fgenesh1_pm.C_scaffold_4002268
Length=1542
Score = 2368 bits (1282), Expect = 0.0
Identities = 1456/1542 (94%), Gaps = 4/1542 (0%)
Strand=Plus/Plus
Query 62 ATGGACCTCTCACTAATTCAAGGCATGTCTCTGCCTCTCTATTTTCTCTTAACATTATTC 121
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 1 ATGGACCTCTCACTAATTCAAGGCATGTCTCTGCCCCTCTATTTTCTCATAACATTCTTC 60
Query 122 TTTTTCTTCTTTGCTACCGCAAAAACGCGGAGAAGCTCTAGCACCGGCACGCTTCCACCG 181
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTTTCTTCTTTGCCACCGCAAAAACGCGGAGAAGCTCTAGCACCGGCACGCTTCCACCG 120
Query 182 GGTCCTCCGATACTGCCATTGGTCGGAAACATATTCCAACTCGGATTCAATCCTCACCGT 241
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTCCTCCGACACTGCCATTGGTTGGAAACATATTCCAACTCGGATTCAATCCTCACCGT 180
Query 242 TCACTTGCTGCCTTTTCGAAAACGTACGGACCTATAATGAGTTTGAAGCTTGGAAGGTTA 301
|| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 181 TCGCTTGCTGCCTTTTCGAAAACATACGGACCTCTAATGAGTTTGAAGCTTGGAAGGTTA 240
Query 302 ACCGCAGTGGTTATATCTTCACCAGAAGCAGCTAAAGAGGCACTTAGAACACACGACCAT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCGCAGTGGTTATATCTTCACCAGAAGCAGCTAAAGAGGCACTTAGAACACACGACCAT 300
Query 362 GTCATGTCCGCTCGAACCTTTAACGACGCTCTTCGAGCCTTTGATCACCATAAACATTCT 421
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 301 GTCATGTCCGCTCGAACCTTTAACGACCCTATTCGAGCCTTTGATCACCATAAACATTCC 360
Query 422 ATTGTCTGGATTCCCCCCTCTGCTCGTTGGAGGTTTCTGAAGAAAACAATAACAAAATAT 481
|||||||||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 361 ATTGTCTGGATTCCTCCCTCGGCTCGTTGGAGGTTTCTGAAGAAAACACTAACGAAATAT 420
Query 482 TTGTTATCACCGCAAAACTTAGATGCTATTCAATCTTTAAGAATGAGAAAGGTGGAGGAA 541
|||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TTGTTATCACCGAAAAACCAAGATGCTATTCAATCTTTAAGGATGAGAAAGGTGGAGGAA 480
Query 542 CTAGTGAGTTTAGTAAATGAATTTCGCGAGAGAGGAGAAGCTATTGACCTGGCTCGTGCT 601
|||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTAGTGGGCTTAGTAAACCAATTTCGCGAGAGAGGAGAAGCTATTGACCTGGCTCGTGCT 540
Query 602 TCCTTCGTCACATCTTTCAATATCATCTCAAATGCTCTGTTTTCAGTAGATTTAGCGACG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 TCCTTCGTCACATCTTTCAATATCATCTCAAATGCTCTGTTTTCAGTAGATTTAGCGGCG 600
Query 662 TATGACTCTAACTCCTCGTCTTACGAATTTCACAACACAGTGGTTCACCTGACGGATATC 721
|||||||||||||||||||||||||||||||||||||| || |||| ||||| ||| |||
Sbjct 601 TATGACTCTAACTCCTCGTCTTACGAATTTCACAACACGGTTGTTCGCCTGATGGAGATC 660
Query 722 GCCGGTATACCCAACGTAGGAGACTATTTCCAGTATATGAGGTTTCTTGATTTGCAAGGT 781
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 TCCGGTAAACCCAACGTAGGAGACTATTTCCGGTATATGAGGTTTCTTGATTTGCAAGGT 720
Query 782 ACCCGGAAAA-AAGCGGTGCTCTGCATAGAGAAATTGTTTAGGGTTTTTCAAGAATTCAT 840
| ||| |||| ||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 721 ATCCG-AAAAGAAGCGGTGCTCTGCATAGAGAGATTGTTTAGGGTTATCCAAGAATTCAT 779
Query 841 TGATGCTCGATTAGCCAAAAGATTTTCTCGGACAGAGAAAGAGCCTAAAGAGGCTTCAAG 900
||||||||| |||||||||||||| |||| || ||||| |||||||||||||||||||||
Sbjct 780 TGATGCTCGGTTAGCCAAAAGATTGTCTCAGAAAGAGACAGAGCCTAAAGAGGCTTCAAG 839
Query 901 CATCGATATGCTAGACTCCCTTCTGGATCTCACACAGCAAAACGAAGCAGAATTAACAAT 960
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 CATGGACATGCTAGACTCCCTTCTGGATCTCACACAGCAAAACGAAGCAGAATTAACCAT 899
Query 961 GAATGATC-TCAAACACTTGCTTCTCGATGTGTTTGTTGCGGGCACAGACACAAACTCTA 1019
|||||| | ||||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 900 GAATGA-CATCAAACACTTGCTTCTCGATGTGTTTGTTGCTGGTACAGATACAAACTCAA 958
Query 1020 GTACAATGGAATGGGCAATGACGGAGTTATTCCGTAGCACGGAGAAGATGGTCAAAGCAC 1079
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| |
Sbjct 959 GTACAATGGAGTGGGCAATGACGGAGTTATTCCGTAGCCCGGAGAAGATGGTTAAAGCTC 1018
Query 1080 AGAGTGAGATACGGCAAGTGATTGGTCAAAACGGTTTCGTTCAAGAATCTGATATCCCGA 1139
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1019 AGAGTGAGATACGGCAAGTGATTGGTGAAAACGGTGTCGTTCAAGAATCTGATATCCCGA 1078
Query 1140 GTCTGCCTTACTTACAAGCAATTGTGAAAGAGACTCTTCGTTTGCATCCTGCAGCTCCTT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GTCTGCCTTACTTACAAGCAATTGTGAAAGAGACTCTTCGTTTGCATCCTGCAGCTCCTT 1138
Query 1200 TGATCCCTAGAAAATCAGAATCCGATGTTCAGATTATGGGTTTCCTTGTTCCTAAAAACA 1259
|||||||||||||||| |||||||||||||||||| |||||||||| |||||| | ||||
Sbjct 1139 TGATCCCTAGAAAATCGGAATCCGATGTTCAGATTTTGGGTTTCCTCGTTCCTGAGAACA 1198
Query 1260 CCCAGGTTGTTGTGAACGTATGGGCGATAGGACGAGACGCGAGCGTGTGGGAAAATCCAA 1319
|||||||| | |||||||| ||||| |||||||||||| ||||||||||||| |||||||
Sbjct 1199 CCCAGGTTCTAGTGAACGTCTGGGCCATAGGACGAGACTCGAGCGTGTGGGATAATCCAA 1258
Query 1320 TGAAGTTCGAGCCAGAGAGGTTCTTGTTACGAGAAACCGATGTAAAAGGCAGAGATTTCG 1379
||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||| |
Sbjct 1259 TGAAGTTCGAGCCAGAGAGATTCTTGTTACGAGAAACCGATCTAAAAGGCAAAGATTTTG 1318
Query 1380 AGTTGATACCGTTTGGATCAGGAAGAAGGATGTGTCCGGGAATCTCGATGGCTCTTAAGA 1439
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 AGTTGATACCATTTGGGTCAGGAAGAAGGATGTGTCCGGGAATCTCGATGGCTCTTAAGA 1378
Query 1440 CAATGCATATGGTGCTTGCCTCTCTTCTCTATTCCTTTGACTGGAAGCTTCAAAACGGTG 1499
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 1379 CAATGCATATGGTGCTTGCCTCTCTTCTTTATTCCTTTGACTGGAAGCTTCCAAACGGCG 1438
Query 1500 TCGTCCCCGGAAACATTGACATGAGCGAGACTTTCGGTCTTACCTTACACAAGGCCAAAT 1559
||||||| | |||||| |||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1439 TCGTCCCTGAAAACATAGACATGAGCGAGGCTTTCGGTCTTACCTTGCACAAGGCCAAAC 1498
Query 1560 CTCTTTGTGCCGTACCCGTCAAGAAACCTACAATATCGTCTT 1601
||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1499 CTCTTTGTGCCGTACCCGTCAAGAATCCTACAATATCGTCTT 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5