BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45590.1
Length=2331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483695 jgi|Araly1|483695|fgenesh2_kg.4__2755__AT2G45590.1 2972 0.0
Ahg915927 jgi|Araly1|915927|Al_scaffold_0008_678 102 1e-20
> Ahg483695 jgi|Araly1|483695|fgenesh2_kg.4__2755__AT2G45590.1
Length=2114
Score = 2972 bits (1609), Expect = 0.0
Identities = 1980/2149 (92%), Gaps = 65/2149 (3%)
Strand=Plus/Plus
Query 1 ACCATCTTCTTCTTCAATGGAAACT-CCGGATTAAATGACACTTCTGTAACTTCCTATAT 59
||| ||||||||||||||||||||| ||| || |||||||||||| |||||| ||| ||
Sbjct 1 ACCTTCTTCTTCTTCAATGGAAACTCCCGTTTTTAATGACACTTCTTTAACTTTCTACAT 60
Query 60 TTACTAAAATGCCATCTCGCCTCTCTCCGCCAGATATTCCGCCGCTGCAACCGACGCCTA 119
||||||||||||||||||| | | ||||||| || | | | |||||||| |
Sbjct 61 TTACTAAAATGCCATCTCG-----C-CAGCCAGAT-TT---TC-C-G---CCGACGCCGA 105
Query 120 CGGTTAGTGACGGCCATCATCGTTTCCAGACTCTTCCACTTATCATAGCCGGTTCTCTGA 179
| |||||||||||||| || | |||||||||||| ||||||||||| ||||||||| |||
Sbjct 106 CTGTTAGTGACGGCCACCACCATTTCCAGACTCTACCACTTATCATCGCCGGTTCTTTGA 165
Query 180 CTTTAACCGGAGTTTTACTCATCCTCGTCACTTTACTTATTTACCGAAGACTCTACCGAA 239
||||||||||||| |||||||||||| ||||| ||||||||||||| |||||||| ||||
Sbjct 166 CTTTAACCGGAGTGTTACTCATCCTCTTCACTGTACTTATTTACCGGAGACTCTATCGAA 225
Query 240 ACCGTACGGCTCCTTCAGATCTTATCTCCAACTCCAAGTCTCCTCAACACTACCAATGTC 299
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 226 ACCGTACGGCTCCTTCAGATCTTATCTCCAACTCCAAATCTCCTCAACAGTACCAATGTC 285
Query 300 GACGCTTCTCTTACTCTCAGCTCCGCCGCGCTACAAACTCTTTCTCCGAGTCGACTCACC 359
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 286 GACGTTTCTCTTTCTCTCAGCTCCGCCGCGCTACAAACTCTTTCTCCGAGTCGACTCAGC 345
Query 360 TCGGTCACGGCGGATTCGGCTCTGTTTACAAAGCTGATTTC-CCGAGTGGCGGCGATTCA 418
||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||
Sbjct 346 TCGGTCACGGCGGATTCGGCTCTGTTTACAAAGCTGATTTCTCC-AGTGGCGGTGACTCT 404
Query 419 CTCGCCGTCAAAGTCATGGATACCTCCGCTGGTTCTTTACAAGGCGAACGTGAGTTTCAC 478
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 405 CTCGCCGTCAAAGTCATGGATACATCCGCTGGTTCTTTACAAGGCGAGCGTGAGTTTCAC 464
Query 479 AACGAGCTTtctctctcttctcacttaattggctctcctcatgtcgtctctctccttgga 538
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 465 AATGAGCTTTCTCTCTCTTCTCACTTAATCGGCTCTCCTCATGTCGTCTCTCTCCTCGGA 524
Query 539 ttctcctccGATCGTCGTGGTCGGAAGCTTATCCTCGTCTACGAACTTATGGCTAATCGT 598
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 525 TTCTCCTCCGATCGTCGTGGTCGGAAGCTTATCCTCGTTTACGAGCTTATGGCTAATCGT 584
Query 599 AGTTTACAAGACGCGCTTTTGGATCGCAAATGTGTGGAGCTTATGGATTGGAACAAAAGG 658
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 585 AGTTTACAAGACGCGCTTTTGGATCGCAAATGTGAGGAGCTTATGGATTGGAACAAAAGG 644
Query 659 TTTGAGATTGCCACGGATATAGCAAAAGGCATCGAGTTTCTTCACCATTGTTGTGATCCA 718
||||||||||| |||||||| || ||||| |||||||||||||||||||| |||||||||
Sbjct 645 TTTGAGATTGCGACGGATATCGCTAAAGGAATCGAGTTTCTTCACCATTGCTGTGATCCA 704
Query 719 ATTATAATCCATGGAGATATTAAACCTAGTAACATCCTTCTCGATTCTGATTTCAAAGCC 778
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 705 ATTATCATCCATGGAGATATTAAACCTAGTAATATCCTTCTCGATTCTGATTTCAAGGCC 764
Query 779 AAAATCGGAGATTTCGGTCTCGCGAGAGTAAAGTCGGAGGATTTCGATACTAGGATTCTG 838
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 765 AAAATCGGAGATTTCGGTCTCGCGAGAGTAAAGTCCGAGGATTTAGATACTAGGATTCTG 824
Query 839 ATTGAGGAAGAAGATAAGAGCAAGGATGTTGTTGAAGATAATGGGTCGATTCTTGAGGAG 898
||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 825 ATTGAGGAAGATGAGAAGAGCAAGGATGTTTTTGAAGATAATGGGTCGATTCTTGAAGAG 884
Query 899 ACTGAAAGCGTGATTACTGTGTTTGAAGAAGGTAATAATGTTGTCAATCTCTCGCCGGAG 958
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 885 ACTGAAAGCGTGATTACTGTGTTTGAAGAGGGTAATAATGTTGCCAATCTCTCGCCGGAG 944
Query 959 ACTTGTGGGATTAGTGTCTTGACAGAGACGG---TGGCCTCTCCGG-GTGAAAAATCTGG 1014
| ||||||||| ||||||||||| ||||||| |||| ||||| | | |||||||||||
Sbjct 945 AATTGTGGGATCAGTGTCTTGACGGAGACGGCGGTGGCGTCTCCCGAG-GAAAAATCTGG 1003
Query 1015 ACTTTCGCCAGAGAATTGTGCAGTGAGCATTTTGACGGTGGAGGTGGGAGCAGCATCTCC 1074
||||||||| |||||||||||||| ||| ||||||||||||||||||||| |||||||||
Sbjct 1004 ACTTTCGCCTGAGAATTGTGCAGTTAGCGTTTTGACGGTGGAGGTGGGAGTAGCATCTCC 1063
Query 1075 GGCGATGGCATCGATACCGTCACCGGAGACTTGTGCGATTAGCGTTTTGACGGATACTGG 1134
|| | || ||||||||||||| ||||| ||||||||||||||||| ||||||| |||||
Sbjct 1064 GGGGCTGACATCGATACCGTCGCCGGAAACTTGTGCGATTAGCGTCTTGACGGGGACTGG 1123
Query 1135 ATTGTCACCGGAA-----A--G--T--A--GC---A-AGC--T----T-AAAGTGGGATC 1170
||||||||||| | | | | | || | || | | |||||||||||
Sbjct 1124 ATTGTCACCGGGAGCTGCATCGGGTTTATCGCCGGAGAGTAGTAAGATTAAAGTGGGATC 1183
Query 1171 GAAGAGAGATTGGTGGTGGAAACAGGACAACAATGGTGGAAGCAGAGGAGGGATTGAATC 1230
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1184 GAAGAGAGATTGGTGGTGGAGACAGGACAACAATGGTGGAAGCAGAGGAGGGATTGAATC 1243
Query 1231 AGGGAGTGTGAAGGATTACGTGATGGAATGGATTGGGAGTGAGATTAAGAAAGAGAGACC 1290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1244 AGGGAGTGTGAAGGATTACGTGATGGAATGGATTGGGAGTGAGATTAAGAAAGAGA-AC- 1301
Query 1291 TAGCAACAATAAGGAATGGATCAACAATGGTGATGGGTCATCATCAGTCTCTaagaagaa 1350
| | |||||||||||||||||||||||| | | ||||||| ||||||||||||||
Sbjct 1302 -A--A-CAATAAGGAATGGATCAACAATGG-G-T----CATCATCGGTCTCTAAGAAGAA 1351
Query 1351 gaagaaagagaagaagagaaagcctagagagtggtggaaggaagagttttgtgaagagct 1410
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1352 GAAGAAAGAGAAGAAGAGAAAGCCTAGAGAATGGTGGAAGGAAGAGTTTTGTGAAGAGCT 1411
Query 1411 gactagaaagaagaggaaaaagaagaagaagaagaaaagaGGGTTAAGCTCAATCTCAAG 1470
||||||||||||||||||||||||||||| |||| | || |||||||||||||||||
Sbjct 1412 AACTAGAAAGAAGAGGAAAAAGAAGAAGAA-AAGA---G-GG-TTAAGCTCAATCTCAAG 1465
Query 1471 CATTGACTCTTGGTTTCATAGAGACGATGGTGCTTCCTCTGTTCATGACCACAATCTTAA 1530
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1466 CATTGACTCTTGGTTTCATAGAGACGATGATGCTTCCTCTGTTCATGACCACAATCTTAA 1525
Query 1531 TCCTACCAAGAGGAAGAAGAGGAATAGTATAGATTGGTGGGTAGATGGGTTAAGTGGGGA 1590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 CCCTACCAAGAGGAAGAAGAGGAATAGTATAGATTGGTGGGTAGATGGGTTAAGTGGGGA 1585
Query 1591 GCTGAAGTCAGTCATGGGTaaaaaaaaCAGTCAAGATTCTGGTTTGTGGTGTGATGTGAA 1650
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TCTAAAGTCAGTCATTGGTAAAAAAAACAGTCAAGATTCTGGTTTGTGGTGTGATGTGAA 1645
Query 1651 TGTTCAGAAGAGTGGTGGAGTCAGCAGCACACCGAGTATGAGAGGTACGGTGTGTTACAT 1710
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1646 TGTTCAGAAGAGTGGCGGAGTCAGTAGCACACCGAGTATGAGAGGTACGGTGTGTTACAT 1705
Query 1711 TGCACCAGAATGTGGAGGAGGAGGTGTGTTGTCTGAGAAATGCGATGTTTATAGTTTTGG 1770
||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1706 TGCACCAGAATGTGGCGGTGGAGGTGTGTTGTCTGAGAAATGTGATGTCTATAGTTTTGG 1765
Query 1771 GGTTCTGCTTTTGGTTCTTGTCTCAGGAAGACGGCCATTGCAGGTGACTGCTTCGCCGAT 1830
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1766 GGTTCTGCTTTTGGTTCTTGTCTCAGGAAGACGGCCATTGCAGGTGACTGCATCACCGAT 1825
Query 1831 GTCGGAGTTTGAGAGGGCTAACTTGATTTCATGGGCTAAGCAATTAGCTTGCAATGGTAA 1890
||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||
Sbjct 1826 GTCGGAGTTTGAGAGGGCTAATTTGATATCATGGGCGAAGCAATTGGCTTGCAATGGTAA 1885
Query 1891 ATTGTTGGAGTTAGTTGATAAATCTATACACTCTTTGGAGAAAGAGCAAGCGGTTCTTTG 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 ATTGTTGGAGTTAGTTGATAAATCTATACACTCTTTGGAGAAAGAGCAAGCGGTTCTTTG 1945
Query 1951 TATTACTATTGCATTGCTTTGTCTGCAAAGATCTCCGGTTAAGAGACCAACGATGAAGGA 2010
|||||||||||||||||||||||||||||||||||| |||| |||||| || ||||||||
Sbjct 1946 TATTACTATTGCATTGCTTTGTCTGCAAAGATCTCCAGTTAGGAGACCGACAATGAAGGA 2005
Query 2011 GATTGTTGAGATGCTTTCGGGTGTGTCTGAGCCACCGCATTTGCCGTTTGAGTTCTCACC 2070
||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 2006 GATTGTTCAGATGCTTTCGGGTGCGTCCGAGCCACCGCATTTGCCGTTTGAGTTCTCACC 2065
Query 2071 CTCGCCGCCTATGGGTTTTCCGTTTAAGTCAAGGAAGAAAGCACGGTGA 2119
|||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 2066 GTCGCCGCCTATGGGGTTTCCGTTTAAGTCAAGGAAGAAAGCAAGGTGA 2114
> Ahg915927 jgi|Araly1|915927|Al_scaffold_0008_678
Length=798
Score = 102 bits (55), Expect = 1e-20
Identities = 62/65 (95%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 1173 AGAGAGATTGGTGGTGGAAACAGGACAACAATGGTGGAAGCAGAGGAGGGATTGAATCAG 1232
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 125 AGAGA-ATTGGTGGTGGAAACATGACAACAATGGTGGAAGCAGAGGAGGGATTGAATCAA 183
Query 1233 GGAGT 1237
|||||
Sbjct 184 GGAGT 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87798014725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5