BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45600.1
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935518 jgi|Araly1|935518|scaffold_403506.1 1557 0.0
> Ahg935518 jgi|Araly1|935518|scaffold_403506.1
Length=1026
Score = 1557 bits (843), Expect = 0.0
Identities = 967/1026 (94%), Gaps = 12/1026 (1%)
Strand=Plus/Plus
Query 198 TCTCTGAAGCATCCATGGAAGCTCCTCCACCTTCAAGCGATCCATACAAGTTCCTCAACA 257
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 TCTCTCAAGCATCCATGGAAGCTCCTCCACCTTCAAGCGATCCATACAAGTTCCTCAACA 68
Query 258 TTACACTTAACTCAGATGGATCTCTCACCAGACACCGTGATTTCCCCAAACTGCCCCCAA 317
|||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 69 TTACACTTAACTCAGATGGATCTCTCACTAGACACCGTGAGTTCCCCAAATTGCCCCCAA 128
Query 318 CAGAGCAATCCAAAGACATACCATTAAACCAAACCAACAATACCTTCATCCGAATCTTCA 377
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 129 CGGAGCAATCCAAAGACATCCCATTAAACCAAACCAACAATACCTTCATCCGAATTTTCA 188
Query 378 AGCCACGGAATATTCCGCCGGAATCCAAACTTCCGATCCTCGTTTACTTTCACGGCGGTG 437
|||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 189 AGCCCCGGAATATTCCGCCGGAATCCAAACTCCCGATCCTCGTTTACTTCCACGGCGGCG 248
Query 438 GATTTATCCTCTACAGCGCCGCTTCAGCTCCTTTCCATGAATCTTGCACCAAAATGGCTG 497
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 249 GGTTTATCCTCTACAGCGCCGCTTCCGCTCCTTTCCATGAATCTTGCACCAAAATGGCTG 308
Query 498 ATCGTCTTCAAACTATAATCCTCTCCGTCGAATACCGTCTAGCTCCCGAACACCGTCTCC 557
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 ATCGTCTTCAAACCATAATCCTCTCCGTCGAATACCGTCTAGCTCCCGAACACCGTCTCC 368
Query 558 CGGCGGCGTACGAAGACGCCGTCGAAGCTA-TCTTATGGCTCCGTGATCAAGCTCGTGG- 615
|||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 369 CGGCGGCGTACGAAGACGCCGTCGAAGC-AGTCTTATGGCTCCGCGATCAAGCTCGTGGC 427
Query 616 GCCAATCAACGGTGGTGATTGCGACACGTGGTTAAAAGACGGTGTCGATTTCTCGAAATG 675
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GC-AATCAACGGTGGCGATTGCGACACGTGGTTAAAAGACGGTGTCGATTTCTCGAAATG 486
Query 676 CTACGTCATGGGTTCAAGCTCTGGAGGAAATATTGTCTACAACGTGGCGTTGCGTGTAGT 735
| ||| |||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||
Sbjct 487 TTTCGTAATGGGTTCGAGCTCCGGAGGAAATATCGTCTACAACGTCGCGTTGCGTGTGGT 546
Query 736 TGACACAGATCTTTCTCCTGTTAAGATCCAAGGGCTGATAATGAACCAAGCTTTCTTCGG 795
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 CGACACAGATCTCACTCCTGTTAAGATCCAAGGGCTGATAATGAACCAAGCTTTCTTCGG 606
Query 796 TGGCGTTGAGCCGTCGGATTCTGAGTCACGGCTTAAAGACGATAAGATCTGTCCGTTACC 855
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 607 TGGCGTTGAACCGTCGGATTCTGAATCACGGCTTAAAGACGATAAGATCTGTCCGTTACC 666
Query 856 AGCTACTCACTTGTTGTGGTCACTTTGTTTACCGGACGGTGTAGATCGTGACCACGTGTA 915
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGCTACTCACTTGTTATGGTCGCTTTGTTTACCGGACGGTGTAGATCGTGACCACGTGTA 726
Query 916 CAGTAATCCAATTAAGAGCAGTGGGCCTCAGGAAAAAGATAAGATGGGACGTTTTCCGTC 975
||| ||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 727 CAGCAATCCGATTAAGAGCAGTGGGCCCCAGGAAAAGGAGAAGATGGGACGTTTTCCGTC 786
Query 976 GACTCTTATCAACGGTTACGGTGGGGATCCTTTAGTGGATCGTCAGAGACACGTGGCGGA 1035
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 787 GACTCTTATTAACGGTTACGGTGGAGATCCGTTAGTGGATCGTCAGAGACACGTGGCGGA 846
Query 1036 GATG-TTAAAGGGACGTGGAGTTCACGTGGAGACGAGGTTTGATAAAGATGGGTTTCATG 1094
|||| |||| || |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 847 GATGCTTAA-GGCCCGTGGAGTGCACGTGGAGACGAGGTTTGATAAAGATGGGTTCCATG 905
Query 1095 CTTGTGAGTTGTTTGATGGGAACAAAGCTAAGGCCCTGTACGAAACCGTTGAGGCCTTTA 1154
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 906 CTTGTGAGTTGTTTGATGGGAACAAAGCTAAGGCCTTGTACGAAACCGTTGAGGCCTTTA 965
Query 1155 TGAAGAGTTGTTCATCAACTGGCCCATCGTCCAACTCCAACATGTAGTAGTCTGATCTAA 1214
||||||||||||||||||||||||||||| || | ||||||||| | || |||||||
Sbjct 966 TGAAGAGTTGTTCATCAACTGGCCCATCG-CC--C---AACATGTAGCAATCCGATCTAA 1019
Query 1215 TCATGT 1220
||||||
Sbjct 1020 TCATGT 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51084708780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5