BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G45610.1 Length=1124 Score E Sequences producing significant alignments: (Bits) Value Ahg483697 jgi|Araly1|483697|fgenesh2_kg.4__2757__AT2G45610.1 1507 0.0 > Ahg483697 jgi|Araly1|483697|fgenesh2_kg.4__2757__AT2G45610.1 Length=975 Score = 1507 bits (816), Expect = 0.0 Identities = 923/976 (95%), Gaps = 2/976 (0%) Strand=Plus/Plus Query 1 ATGTCACGTGACTCTCCTCCCGCATTTGATCCATACAAACACCTCAACATAACAATCAAC 60 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCACGTGACTCTCGTCCCGCGTTTGATCCATACAAACACCTCAACATAACAATCAAC 60 Query 61 CCCAACGGCTCTTGCACGCGCCATTTCGTTTGGCCGAGGGTTGAACCCGACCCGGATCCA 120 |||||||| |||||||||||||| ||| ||||||||| |||||| ||||||||||||||| Sbjct 61 CCCAACGGTTCTTGCACGCGCCACTTCATTTGGCCGATGGTTGATCCCGACCCGGATCCA 120 Query 121 TGCCCCGGCAAGCTCGCCGCTTCCAAAGACGTAACCATTAACCACGAAACCGGCGTGTCC 180 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TGCCCTGGCAAGCTCGCCGCTTCCAAAGACGTAACCATTAACCACGAAACCGGCGTGTCC 180 Query 181 GTACGTATTTTCCGACCAACTAATCTACCATCCAATGATAACGCCGTGGCTCGTCTCCCA 240 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 181 GTACGTATTTTCCGACCAACTAATCTACCATCCAACGATAACGCCGTCGCTCGTCTCCCA 240 Query 241 ATCATCATCCATCTCCACGGCTCCGGTTGGATCCTTTACCCGGCCAATTCTGCCGCAAAT 300 || |||||||||||||||||||||||||||||||||||||| |||||||| | || || Sbjct 241 ATTATCATCCATCTCCACGGCTCCGGTTGGATCCTTTACCCAGCCAATTCCGTTGCGAAC 300 Query 301 GACCGTTGTTGCTCTCAAATGGCCAGTGAGTTAACAGTGATTGTTGTCTCCGTACACTAT 360 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 301 AACCGTTGCTGCTCTCAAATGGCCAGTGAGTTAACGGTGATTGTTGTCTCCGTACACTAC 360 Query 361 CGTTTGCCTCCGGAGCATAGACTCCCAGCTCAATACGACGACGCATTAGATGCTCTGCTT 420 ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 361 CGTTTACCTCCTGAACATAGACTCCCAGCTCAATACGACGACGCATTAGACGCTCTGCTT 420 Query 421 TGGGTCAAACAACAAGTCGTTGACTCAACCAACGGCGAGCCGTGGCTTA-AGGACTACGC 479 ||||||||||| ||||||||||||||||| ||||||||||| ||||||| || ||||||| Sbjct 421 TGGGTCAAACAGCAAGTCGTTGACTCAACTAACGGCGAGCCTTGGCTTAGAG-ACTACGC 479 Query 480 CGATTTCTCACGGTGTTACATATGCGGTTCGAGTAACGGCGCTAACATCGCTTTCCAATT 539 |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 480 CGATTTCTCACGGTGTTATATCTGCGGTTCGAGTAACGGCGCTAACATCGCTTTCCAATT 539 Query 540 GGCACTGAGATCGTTAGACCACGATTTAACGCCGTTACAAATCGACGGTTGCGTGTTTTA 599 ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| Sbjct 540 GGCACTGAGATCGTTAGACCACGATTTGACGCCGTTAAAAATTGACGGTTGCGTGTTTTA 599 Query 600 CCAACCGCTTTTTGGCGGTAAAACGAGGACAAAATCGGAGCTTAAGAATTTCGCCGACCC 659 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || Sbjct 600 CCAACCGCTTTTTGGCGGTAAAACGAGGACGAAATCGGAGCTCAAGAATTTCGCCGATCC 659 Query 660 GGTAATGCCGGTTCCTGCGGTTGACGCCATGTGGGAACTATCTTTGCCGGTAGGTGTTGA 719 ||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GGTGATGCCGGTGCCGGCTGTTGACGCCATGTGGGAACTATCTTTGCCGGTAGGTGTTGA 719 Query 720 TCGGGATCATAGGTACTGTAATCCATTGGGTTACTTGCCGCAAAAGGAGAAAGTTGGACG 779 ||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 720 TCGGGATCATAGGTATTGTAATCCGTTGGGTTATTTGCCGCAAAAAGAGAAAGTTGGACG 779 Query 780 GCTTGGACGGTGTTTGGTGATCGGTTACGGCGGAGACACGTCGTTGGATCGACAACAAGA 839 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 ACTTGGACGGTGTTTAGTGATCGGTTACGGCGGAGACACGTCGTTGGATCGACAACAAGA 839 Query 840 TTTCGTGAATTTGTTGGTTGCAGCTGGAGTTAGGGTTGAAGCAAGGTTTGACGACGCCGG 899 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 840 TTTCGTGAATTTGTTGGTTGCGGCTGGAGTTAGGGTTGAAGCAAGGTTTGACGACGCCGG 899 Query 900 TTTCCATAGCATCGAGCTGGTCGATCCACGACGAGCCGTCGCTCTTCTTAATATGATTAG 959 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || Sbjct 900 TTTCCATAGCATCGAGCTCGTCGATCCACGGCGAGCCGTCGCTCTTCTTAATATGATCAG 959 Query 960 AGATTTTATAAGTTGA 975 ||||||||| |||||| Sbjct 960 AGATTTTATCAGTTGA 975 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41897085783 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5