BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G45610.1
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483697 jgi|Araly1|483697|fgenesh2_kg.4__2757__AT2G45610.1 1507 0.0
> Ahg483697 jgi|Araly1|483697|fgenesh2_kg.4__2757__AT2G45610.1
Length=975
Score = 1507 bits (816), Expect = 0.0
Identities = 923/976 (95%), Gaps = 2/976 (0%)
Strand=Plus/Plus
Query 1 ATGTCACGTGACTCTCCTCCCGCATTTGATCCATACAAACACCTCAACATAACAATCAAC 60
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCACGTGACTCTCGTCCCGCGTTTGATCCATACAAACACCTCAACATAACAATCAAC 60
Query 61 CCCAACGGCTCTTGCACGCGCCATTTCGTTTGGCCGAGGGTTGAACCCGACCCGGATCCA 120
|||||||| |||||||||||||| ||| ||||||||| |||||| |||||||||||||||
Sbjct 61 CCCAACGGTTCTTGCACGCGCCACTTCATTTGGCCGATGGTTGATCCCGACCCGGATCCA 120
Query 121 TGCCCCGGCAAGCTCGCCGCTTCCAAAGACGTAACCATTAACCACGAAACCGGCGTGTCC 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGCCCTGGCAAGCTCGCCGCTTCCAAAGACGTAACCATTAACCACGAAACCGGCGTGTCC 180
Query 181 GTACGTATTTTCCGACCAACTAATCTACCATCCAATGATAACGCCGTGGCTCGTCTCCCA 240
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 181 GTACGTATTTTCCGACCAACTAATCTACCATCCAACGATAACGCCGTCGCTCGTCTCCCA 240
Query 241 ATCATCATCCATCTCCACGGCTCCGGTTGGATCCTTTACCCGGCCAATTCTGCCGCAAAT 300
|| |||||||||||||||||||||||||||||||||||||| |||||||| | || ||
Sbjct 241 ATTATCATCCATCTCCACGGCTCCGGTTGGATCCTTTACCCAGCCAATTCCGTTGCGAAC 300
Query 301 GACCGTTGTTGCTCTCAAATGGCCAGTGAGTTAACAGTGATTGTTGTCTCCGTACACTAT 360
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 AACCGTTGCTGCTCTCAAATGGCCAGTGAGTTAACGGTGATTGTTGTCTCCGTACACTAC 360
Query 361 CGTTTGCCTCCGGAGCATAGACTCCCAGCTCAATACGACGACGCATTAGATGCTCTGCTT 420
||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 CGTTTACCTCCTGAACATAGACTCCCAGCTCAATACGACGACGCATTAGACGCTCTGCTT 420
Query 421 TGGGTCAAACAACAAGTCGTTGACTCAACCAACGGCGAGCCGTGGCTTA-AGGACTACGC 479
||||||||||| ||||||||||||||||| ||||||||||| ||||||| || |||||||
Sbjct 421 TGGGTCAAACAGCAAGTCGTTGACTCAACTAACGGCGAGCCTTGGCTTAGAG-ACTACGC 479
Query 480 CGATTTCTCACGGTGTTACATATGCGGTTCGAGTAACGGCGCTAACATCGCTTTCCAATT 539
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGATTTCTCACGGTGTTATATCTGCGGTTCGAGTAACGGCGCTAACATCGCTTTCCAATT 539
Query 540 GGCACTGAGATCGTTAGACCACGATTTAACGCCGTTACAAATCGACGGTTGCGTGTTTTA 599
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||
Sbjct 540 GGCACTGAGATCGTTAGACCACGATTTGACGCCGTTAAAAATTGACGGTTGCGTGTTTTA 599
Query 600 CCAACCGCTTTTTGGCGGTAAAACGAGGACAAAATCGGAGCTTAAGAATTTCGCCGACCC 659
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 600 CCAACCGCTTTTTGGCGGTAAAACGAGGACGAAATCGGAGCTCAAGAATTTCGCCGATCC 659
Query 660 GGTAATGCCGGTTCCTGCGGTTGACGCCATGTGGGAACTATCTTTGCCGGTAGGTGTTGA 719
||| |||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGTGATGCCGGTGCCGGCTGTTGACGCCATGTGGGAACTATCTTTGCCGGTAGGTGTTGA 719
Query 720 TCGGGATCATAGGTACTGTAATCCATTGGGTTACTTGCCGCAAAAGGAGAAAGTTGGACG 779
||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 720 TCGGGATCATAGGTATTGTAATCCGTTGGGTTATTTGCCGCAAAAAGAGAAAGTTGGACG 779
Query 780 GCTTGGACGGTGTTTGGTGATCGGTTACGGCGGAGACACGTCGTTGGATCGACAACAAGA 839
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACTTGGACGGTGTTTAGTGATCGGTTACGGCGGAGACACGTCGTTGGATCGACAACAAGA 839
Query 840 TTTCGTGAATTTGTTGGTTGCAGCTGGAGTTAGGGTTGAAGCAAGGTTTGACGACGCCGG 899
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTTCGTGAATTTGTTGGTTGCGGCTGGAGTTAGGGTTGAAGCAAGGTTTGACGACGCCGG 899
Query 900 TTTCCATAGCATCGAGCTGGTCGATCCACGACGAGCCGTCGCTCTTCTTAATATGATTAG 959
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 900 TTTCCATAGCATCGAGCTCGTCGATCCACGGCGAGCCGTCGCTCTTCTTAATATGATCAG 959
Query 960 AGATTTTATAAGTTGA 975
||||||||| ||||||
Sbjct 960 AGATTTTATCAGTTGA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41897085783
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5